BAC Information

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BAC

Clone NameB6Ng01-053D16
Chromosome7 (Build37)2 (Build37)
Map Location 5,861,991 - 5,862,666140,262,060 - 140,262,266
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11
Downstream geneLOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053D16.bB6Ng01-053D16.g
ACCDH876340DH876341
length934937
definitionDH876340|Mus musculus domesticus DNA, BAC clone: B6Ng01-053D16, 5' end.DH876341|Mus musculus domesticus DNA, BAC clone: B6Ng01-053D16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,861,991 - 5,862,666)(140,262,060 - 140,262,266)
sequence
gaattccatggatagagtactataagctataaaatgaagtaaatcctttg
cttctcaaatgaattttaatcatggtcttttgtaacagcagtataatctg
aaaataacacaaatatgtttctctgtatctgagagaacaagcctattcca
tattgggactggattgcattttaaaagaaaaaagagtcacagtgaagata
ggagaggttatgaagcaaatggatttaacagaaatctacagaacatttca
ccctaaaacaaaagaatacaccttcttagcaccacatggtccatttttca
aaattgaccatataattggtctcaaaacaaaacctcaaccaatacaagaa
gattgaaataataccatgtgtcctatcagatcaccatggcctaaggaagc
tcttcaataccagcaaatactacaaaaatcccacatacacatggaaactg
agcaactcttttactcaatgacaacgttgtcagagaagaaataaaaaatg
aaaagaaagacttcctggaacttaataaatatgttgccacatcataacca
aagttatagtacacaatgaaaacaatactaggagaaaagttattagcaca
aatttccctgttaatgaaacaggagagatcttacattcaaaaaaatcatc
gatgccactataaaagcctatactcaaaaaaaaaaaaaaaaccttgaaaa
tctagatgaaatgaatggatttccagacagatgtcacataccaaaggtaa
atcaagagcagatagactatgtaaacaggctcatatcacacaaggaaata
aaagaagccattaaaaacctctcaaccaaaaataaaataaaatgaaattt
aaaagcccaggaccagatggatttagtgcagaattctaccagaccttcaa
agaagacctgatagcattttccacaaattattcc
gaattccacataaaacctgagaaactgaaacttatagaggagaaagtggg
gaaaagcctggaagatatgggcacagggaaaaaattcctgtatagaacag
caatggcttgtgctttaagattgagaattgacaaatgggacctcataata
ttgcaaagcttctgtaaggcaaaataccctgtcaataagacaaaaaggcc
accaacagattaggaaaagatgtttaccaatcctaaatccaataggggac
taatatccaatatatataaagaactcaagaaggtggactccagaaaatca
aataaccctattaaaaaaatggggcagagagctaaacaaataattctcaa
gtgaggaatatcgaatggctgagaagcatctgaaaaaatgttcaacattc
tttatcatcagggaaatgcaaatcaaaacaaccctgtgattccaccttac
accagccagaatggctaagatccaaaattcaggtgacagcagatgttggc
gtggatgtggagaaagaggaacactcctccatttttggtgcgattgcaag
ctggtacaaccactctggaaataagtctggtgtttcctcagaaatatgaa
catagtaccactggaagatccagtaatacctctcctgggcatatactcag
aatattctccaatgtaataaggacacgtgctcctccactatgttcatagc
agccttatttatttaatattttcatgcaaagttcaaatcttgcattgaaa
tatacattttgaaattaatttattttattgtctccatgagatcattaagt
cttttttctttcaattttatataagatattttcttcatttacatttcaaa
tgctatccaaaaagtcccctataccttcacctttccctgactgttcttct
agagttcctgagttcgtttccagcaaccacatgttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5861991_5862666
seq2: B6Ng01-053D16.b_43_718

seq1  GAATTCCATGGATAGAGTACTATAAGCTATAAAATGAAGTAAATCCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGATAGAGTACTATAAGCTATAAAATGAAGTAAATCCTTTG  50

seq1  CTTCTCAAATGAATTTTAATCATGGTCTTTTGTAACAGCAGTATAATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAATGAATTTTAATCATGGTCTTTTGTAACAGCAGTATAATCTG  100

seq1  AAAATAACACAAATATGTTTCTCTGTATCTGAGAGAACAAGCCTATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACACAAATATGTTTCTCTGTATCTGAGAGAACAAGCCTATTCCA  150

seq1  TATTGGGACTGGATTGCATTTTAAAAGAAAAAAGAGTCACAGTGAAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGACTGGATTGCATTTTAAAAGAAAAAAGAGTCACAGTGAAGATA  200

seq1  GGAGAGGTTATGAAGCAAATGGATTTAACAGAAATCTACAGAACATTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTTATGAAGCAAATGGATTTAACAGAAATCTACAGAACATTTCA  250

seq1  CCCTAAAACAAAAGAATACACCTTCTTAGCACCACATGGTCCATTTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAACAAAAGAATACACCTTCTTAGCACCACATGGTCCATTTTTCA  300

seq1  AAATTGACCATATAATTGGTCTCAAAACAAAACCTCAACCAATACAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGACCATATAATTGGTCTCAAAACAAAACCTCAACCAATACAAGAA  350

seq1  GATTGAAATAATACCATGTGTCCTATCAGATCACCATGGCCTAAGGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAATAATACCATGTGTCCTATCAGATCACCATGGCCTAAGGAAGC  400

seq1  TCTTCAATACCAGCAAATACTACAAAAATCCCACATACACATGGAAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAATACCAGCAAATACTACAAAAATCCCACATACACATGGAAACTG  450

seq1  AGCAACTCTTTTACTCAATGACAACGTTGTCAGAGAAGAAATAAAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTCTTTTACTCAATGACAACGTTGTCAGAGAAGAAATAAAAAATG  500

seq1  AAAAGAAAGACTTCCTGGAACTTAATAAATATGTTGCCACATCATAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGACTTCCTGGAACTTAATAAATATGTTGCCACATCATAACCA  550

seq1  AAGTTATAGTACACAATGAAAACAATACTAGGAGAAAAGTTATTAGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATAGTACACAATGAAAACAATACTAGGAGAAAAGTTATTAGCACA  600

seq1  AATTTCCCTGTTAATGAAACAGGAGAGATCTTACATTCAAAAAAATCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCTGTTAATGAAACAGGAGAGATCTTACATTCAAAAAAATCATC  650

seq1  GATGCCACTATAAAAGCCTATACTCA  676
      ||||||||||||||||||||||||||
seq2  GATGCCACTATAAAAGCCTATACTCA  676

seq1: chr2_140262060_140262266
seq2: B6Ng01-053D16.g_286_495 (reverse)

seq1  -TTTTATTTGCATTTCCTTGATGATTAAGGATGTTGAACATTTTTTCAGG  49
       ||| |||||||||||| ||||||| ||| ||||||||||||||||||| 
seq2  TTTTGATTTGCATTTCCCTGATGATAAAGAATGTTGAACATTTTTTCAGA  50

seq1  TGCTTCTCAGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTTAGCTC  99
      ||||||||||||||||| |||||||||  |||||||| ||||||||||||
seq2  TGCTTCTCAGCCATTCGATATTCCTCACTTGAGAATTATTTGTTTAGCTC  100

seq1  TGAGCCCCA--TTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTC  147
      |  ||||||  |||||||| ||||||||||||||||||||||||||||||
seq2  TCTGCCCCATTTTTTTAATAGGGTTATTTGATTTTCTGGAGTCCACCTTC  150

seq1  TTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGGTA  197
      |||||||||||||||||||||||||||||||||||||  |||||||| | 
seq2  TTGAGTTCTTTATATATATTGGATATTAGTCCCCTATTGGATTTAGGATT  200

seq1  GGTAAAGATC  207
      |||||| |||
seq2  GGTAAACATC  210