BAC Information

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BAC

Clone NameB6Ng01-053N03
Chromosome7 (Build37)
Map Location 7,416,662 - 7,529,712
singlet/doubletdoublet
Overlap geneV2r5, LOC100041883, EG628117, Vmn2r33
Upstream geneOlfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36
Downstream geneLOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053N03.bB6Ng01-053N03.g
ACCDH876750DH876751
length1,1661,105
definitionDH876750|Mus musculus domesticus DNA, BAC clone: B6Ng01-053N03, 5' end.DH876751|Mus musculus domesticus DNA, BAC clone: B6Ng01-053N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,416,662 - 7,417,831)(7,528,596 - 7,529,712)
sequence
gaattcctaaatatttgttcagaaatatgatttttccctgatcttttggg
tagaatttctctctggtctcattaaaatgatataaatcttgggtacaaaa
atacattcaagcatccctgcactggatgccaagatggagaagatctccac
agcaaccatgtgtttgccctttgtgctatggtacacagggaggaaggtga
cccagacactgcagaacactagcatgctgaaggtcaagaacttggcttca
ttgaatgcatcaggcagattcttggccaagaaagccaaagtgaagcttcc
cagtgccaggcaggccaagtatccaaggacacagtagaatgcagtaactg
agcccttgttgcacacaatgatgatgtggccatgctgagagtgttcatca
atatcaacaaagggaggagagactgctagccagattgcacacagaacaca
ttggagtagggaacatataggaataatgtagtttagtgtccctgatacaa
ggaagtatctcaatcttcttcctgggtctgtgactttgaaagctagaacc
acagtgactgttttggccagaactgtggaaacagctacagtaaatacaat
tccaaatgtgatctgctgtaagacacagatgactttgtttggaaggccaa
tgaagaaaaaggagcacagaaaacagaacatgagtgacatgagtaataga
tagctgaggcttctgttattggccttcacaataggagtgtcatggtgctt
cacaaagacacaaagtaccacagctgtgaatgcagagaagcagaaggcca
ttaaggcaagtgccatccccaaggggtcttcatagcttaggaaggtgaca
cctttctgaatacatttgttctgttctgtgttggcatattggtattctgg
acaattcacgcattgatccatatctgatttccaaaagaaagcttagttag
gtctgcttaagaaattttattgtcaatgtatttcaagtaaggtaatgaaa
gaagctttgccatgatgccttgatgctgagaattgtaatattgaaggata
atgtttctggagcattgctttcaatcatatgttcataaaggatttaagcc
ataaactaagcattttttctttatctactacctgatagtattatttatga
agtgtatatagaaagg
gaattccattatgcatctccaaatttctattagcgtggggatgcacaata
gaaaagttattggtgatgacgtcatatctgatgtgtataactgagaagag
tttgaattcttgagatcagtggtgaaagaatacttgatttcaaatatgtc
ctttctttcttcctctatggtaatttcccaagctttctttgcaagaggac
ctgtcaagtatcattcacacaaaggcctaaaaccagttgggtcttaaatc
caagacaaaaattttgaactaaggtgtccattaacatatcaaactggaca
gtggcctccagtttctctcagcatccctctgtctctactacatataggtc
cctcctggctggcatgcctccccaaactagctccaactttctagaccagg
tgatcccctggactttccttcttccagatcttctgacatctatataactc
agccacttataaccgtgttagtctcttcactcaggctgcccctcttggtt
ggtggcccctctttctcttttcagatcgcctatcctcacatggaccagct
tagggtcatgttcactctgttaactctcacagaggtttcctgtctggtct
ggaactcactgtgacaggccaatttctaatcccagacattaacttgcctc
tgctagcagttctgtaatttaggagtgtttcagcaagcccggcctttgta
gctcaaggaaatactggcacatctataatcacaacactctccctaacaga
ttgagtgtacagctccatcttgggaggtgtgtctacttcctggcacttca
tcatgtctgaactacattgtacagaagacattgcactgagaatagccaga
gaaaacaggcattttggtgaagacaaaataatgggaccttgacaataaaa
tttctaaagcagatctaactaagctttcctttggaaatcagatttggatc
aatgtgtgattgtgtgcagaggtctttgaaactttttggatctgtcagtc
acagaaaactagtttatcatattggtcatggcacgaaatgggagagtgaa
gagtcttcctctatcaaggaggtgcaactgaggtttctataccagtgatc
tgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7416662_7417831
seq2: B6Ng01-053N03.b_41_1206

seq1  GAATTCCTAAATATTTGTTCAGAAATATGATTTTTCCCTGATCTTTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAATATTTGTTCAGAAATATGATTTTTCCCTGATCTTTTGGG  50

seq1  TAGAATTTCTCTCTGGTCTCATTAAAATGATATAAATCTTGGGTACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTCTCTCTGGTCTCATTAAAATGATATAAATCTTGGGTACAAAA  100

seq1  ATACATTCAAGCATCCCTGCACTGGATGCCAAGATGGAGAAGATCTCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTCAAGCATCCCTGCACTGGATGCCAAGATGGAGAAGATCTCCAC  150

seq1  AGCAACCATGTGTTTGCCCTTTGTGCTATGGTACACAGGGAGGAAGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCATGTGTTTGCCCTTTGTGCTATGGTACACAGGGAGGAAGGTGA  200

seq1  CCCAGACACTGCAGAACACTAGCATGCTGAAGGTCAAGAACTTGGCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACACTGCAGAACACTAGCATGCTGAAGGTCAAGAACTTGGCTTCA  250

seq1  TTGAATGCATCAGGCAGATTCTTGGCCAAGAAAGCCAAAGTGAAGCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGCATCAGGCAGATTCTTGGCCAAGAAAGCCAAAGTGAAGCTTCC  300

seq1  CAGTGCCAGGCAGGCCAAGTATCCAAGGACACAGTAGAATGCAGTAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCAGGCAGGCCAAGTATCCAAGGACACAGTAGAATGCAGTAACTG  350

seq1  AGCCCTTGTTGCACACAATGATGATGTGGCCATGCTGAGAGTGTTCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTGTTGCACACAATGATGATGTGGCCATGCTGAGAGTGTTCATCA  400

seq1  ATATCAACAAAGGGAGGAGAGACTGCTAGCCAGATTGCACACAGAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAACAAAGGGAGGAGAGACTGCTAGCCAGATTGCACACAGAACACA  450

seq1  TTGGAGTAGGGAACATATAGGAATAATGTAGTTTAGTGTCCCTGATACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTAGGGAACATATAGGAATAATGTAGTTTAGTGTCCCTGATACAA  500

seq1  GGAAGTATCTCAATCTTCTTCCTGGGTCTGTGACTTTGAAAGCTAGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTATCTCAATCTTCTTCCTGGGTCTGTGACTTTGAAAGCTAGAACC  550

seq1  ACAGTGACTGTTTTGGCCAGAACTGTGGAAACAGCTACAGTAAATACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACTGTTTTGGCCAGAACTGTGGAAACAGCTACAGTAAATACAAT  600

seq1  TCCAAATGTGATCTGCTGTAAGACACAGATGACTTTGTTTGGAAGGCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGTGATCTGCTGTAAGACACAGATGACTTTGTTTGGAAGGCCAA  650

seq1  TGAAGAAAAAGGAGCACAGAAAACAGAACATGAGTGACATGAGTAATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAAAGGAGCACAGAAAACAGAACATGAGTGACATGAGTAATAGA  700

seq1  TAGCTGAGGCTTCTGTTATTGGCCTTCACAATAGGAGTGTCATGGTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAGGCTTCTGTTATTGGCCTTCACAATAGGAGTGTCATGGTGCTT  750

seq1  CACAAAGACACAAAGTACCACAGCTGTGAATGCAGAGAAGCAGAAGGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGACACAAAGTACCACAGCTGTGAATGCAGAGAAGCAGAAGGCCA  800

seq1  TTAAGGCAAGTGCCATCCCCAAGGGGTCTTCATAGCTTAGGAAGGTGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCAAGTGCCATCCCCAAGGGGTCTTCATAGCTTAGGAAGGTGACA  850

seq1  CCTTTCTGAATACATTTGTTCTGTTCTGTGTTGGCATATTGGTATTCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGAATACATTTGTTCTGTTCTGTGTTGGCATATTGGTATTCTGG  900

seq1  ACAATTCACGCATTGATCCATATCTGATTTCCAAAAGAAAGCTTAGTTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCACGCATTGATCCATATCTGATTTCCAAAAGAAAGCTTAGTTAG  950

seq1  GTCTGCTTAAGAAATTTTATTGTCAATGTATTTCAAGTAAGGGTAATGAA  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCTGCTTAAGAAATTTTATTGTCAATGTATTTCAAGTAA-GGTAATGAA  999

seq1  AGAAGCTTTGCAATGATGCCTTTGATGCTGAGAA-TGTAATA-TGAAGGA  1048
      ||||||||||| |||||||| ||||||||||||| ||||||| |||||||
seq2  AGAAGCTTTGCCATGATGCC-TTGATGCTGAGAATTGTAATATTGAAGGA  1048

seq1  TAATGTTTCT-GAGCATTGCTTTCAATTCATAATGTTCATAAAGATTTAA  1097
      |||||||||| ||||||||||||||| |||| ||||||||||||  || |
seq2  TAATGTTTCTGGAGCATTGCTTTCAA-TCAT-ATGTTCATAAAGGATTTA  1096

seq1  AGCAAATAAAACTAAGCAATTTTTTCTTTATCTACTTAACTTGATAGTAT  1147
      ||| |   ||||||||| ||||||||||||||||||  || |||||||||
seq2  AGCCA--TAAACTAAGC-ATTTTTTCTTTATCTACT--ACCTGATAGTAT  1141

seq1  TATTTATGATGT-TAT-TAGAAAGG  1170
      ||||||||| || ||| ||||||||
seq2  TATTTATGAAGTGTATATAGAAAGG  1166

seq1: chr7_7528596_7529712
seq2: B6Ng01-053N03.g_69_1173 (reverse)

seq1  GATCAGATCACATGGGTTATAGAAAACCTCAGTTGCACCTCCTTGATAGA  50
      ||||||||||| |||  ||||| |||||||||||||||||||||||||||
seq2  GATCAGATCAC-TGG--TATAG-AAACCTCAGTTGCACCTCCTTGATAGA  46

seq1  GGAAAGACTCTTCAACTCTCCCAATTTCGTGCCATGACCAATACTGATAA  100
      || |||||||||| |||||||| |||||||||||||||||||| |||| |
seq2  GG-AAGACTCTTC-ACTCTCCC-ATTTCGTGCCATGACCAATA-TGAT-A  91

seq1  AACTAGTTTTCTGTGACTGACAGATCCAAAAAGTTTCAAAGAACCTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||  | ||||
seq2  AACTAGTTTTCTGTGACTGACAGATCCAAAAAGTTTCAAAGA--CCTCTG  139

seq1  CACACAATTCACACATTGATCCAAATCTGATTTCCAAAGGAAAGCTTAGT  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAA-TCACACATTGATCCAAATCTGATTTCCAAAGGAAAGCTTAGT  188

seq1  TAGATCTGCTTTAGAAATTTTATTGTCAAGGTCCCATTATTTTGTCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTGCTTTAGAAATTTTATTGTCAAGGTCCCATTATTTTGTCTTCA  238

seq1  CCAAAATGCCTGTTTTCTCTGGCTATTCTCAGTGCAATGTCTTCTGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGCCTGTTTTCTCTGGCTATTCTCAGTGCAATGTCTTCTGTACA  288

seq1  ATGTAGTTCAGACATGATGAAGTGCCAGGAAGTAGACACACCTCCCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTTCAGACATGATGAAGTGCCAGGAAGTAGACACACCTCCCAAGA  338

seq1  TGGAGCTGTACACTCAATCTGTTAGGGAGAGTGTTGTGATTATAGATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTGTACACTCAATCTGTTAGGGAGAGTGTTGTGATTATAGATGTG  388

seq1  CCAGTATTTCCTTGAGCTACAAAGGCCGGGCTTGCTGAAACACTCCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTTCCTTGAGCTACAAAGGCCGGGCTTGCTGAAACACTCCTAAA  438

seq1  TTACAGAACTGCTAGCAGAGGCAAGTTAATGTCTGGGATTAGAAATTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAACTGCTAGCAGAGGCAAGTTAATGTCTGGGATTAGAAATTGGC  488

seq1  CTGTCACAGTGAGTTCCAGACCAGACAGGAAACCTCTGTGAGAGTTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACAGTGAGTTCCAGACCAGACAGGAAACCTCTGTGAGAGTTAACA  538

seq1  GAGTGAACATGACCCTAAGCTGGTCCATGTGAGGATAGGCGATCTGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAACATGACCCTAAGCTGGTCCATGTGAGGATAGGCGATCTGAAAA  588

seq1  GAGAAAGAGGGGCCACCAACCAAGAGGGGCAGCCTGAGTGAAGAGACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGGGGCCACCAACCAAGAGGGGCAGCCTGAGTGAAGAGACTAA  638

seq1  CACGGTTATAAGTGGCTGAGTTATATAGATGTCAGAAGATCTGGAAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTTATAAGTGGCTGAGTTATATAGATGTCAGAAGATCTGGAAGAAG  688

seq1  GAAAGTCCAGGGGATCACCTGGTCTAGAAAGTTGGAGCTAGTTTGGGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCAGGGGATCACCTGGTCTAGAAAGTTGGAGCTAGTTTGGGGAG  738

seq1  GCATGCCAGCCAGGAGGGACCTATATGTAGTAGAGACAGAGGGATGCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCAGCCAGGAGGGACCTATATGTAGTAGAGACAGAGGGATGCTGA  788

seq1  GAGAAACTGGAGGCCACTGTCCAGTTTGATATGTTAATGGACACCTTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTGGAGGCCACTGTCCAGTTTGATATGTTAATGGACACCTTAGT  838

seq1  TCAAAATTTTTGTCTTGGATTTAAGACCCAACTGGTTTTAGGCCTTTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTTTTGTCTTGGATTTAAGACCCAACTGGTTTTAGGCCTTTGTG  888

seq1  TGAATGATACTTGACAGGTCCTCTTGCAAAGAAAGCTTGGGAAATTACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGATACTTGACAGGTCCTCTTGCAAAGAAAGCTTGGGAAATTACCA  938

seq1  TAGAGGAAGAAAGAAAGGACATATTTGAAATCAAGTATTCTTTCACCACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAAGAAAGAAAGGACATATTTGAAATCAAGTATTCTTTCACCACT  988

seq1  GATCTCAAGAATTCAAACTCTTCTCAGTTATACACATCAGATATGACGTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAAGAATTCAAACTCTTCTCAGTTATACACATCAGATATGACGTC  1038

seq1  ATCACCAATAACTTTTCTATTGTGCATCCCCACGCTAATAGAAATTTGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAATAACTTTTCTATTGTGCATCCCCACGCTAATAGAAATTTGGA  1088

seq1  GATGCATAATGGAATTC  1117
      |||||||||||||||||
seq2  GATGCATAATGGAATTC  1105