BAC Information

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BAC

Clone NameB6Ng01-055N17
Chromosome7 (Build37)
Map Location 16,086,266 - 16,087,386
singlet/doubletsinglet
Overlap geneLOC100042762
Upstream geneB430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921
Downstream geneObox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055N17.bB6Ng01-055N17.g
ACCDH878191DH878192
length1,2351,128
definitionDH878191|Mus musculus domesticus DNA, BAC clone: B6Ng01-055N17, 5' end.DH878192|Mus musculus domesticus DNA, BAC clone: B6Ng01-055N17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagcaggattttggctgcagtagtaggggaacgtgaaggaagga
acaagccagagaatagacagacagggtatctgggcaaccaggaacccaga
cctgaaggaggaagatctgtccagaagcttttagagaaggaccaatgtgc
ctattgaaaggaaaaaggacattggtcatgggaatacccaaagaagaagg
gaagggcccataatgtcctgactctgaaagatgatgaataagggagacgg
ggctcggaacccctcctggagccgagggtaaccctgatggtggaggggat
tcccatggactttttaattgacacaggggcagagcattctgtgttgaaac
atccactgggaaaatttaaaaaaaataaaagaacaatagtgattggagcc
actggtcagaaacaatacccctggaccactgtgtgcactgtagatctggg
gaaaggctaagtgagtcattccttcttggtcattcctgagtgccccacac
cgcttctaggaagagatcttctcactaaattaaagccccagcttagattt
tcccaagaagggctgagagtaagttgggaacctcccacctccgtagtctt
agccctgcagcttgaggaagaatacagattacatgaaggcataaagcaaa
cggaggtgccagacctaaaagattggttgactgctttccctagagcatgg
gcagagactggaggcatgggaatggttgtcaaagtttcccctgtggttat
gggactgaaaacagatgcaacccctataggagtgcgacaatacccaatga
gccatgaagcaagagatggaatcaggccacatattcagagactattacaa
ctgggtattttggtaccttgccagtcaccctggaatactcctctactgct
ggtaaagaatcctggcatgagtgattattgaccagtccagacctgagaaa
cgtcataagagtgtcaagatatcatctactgttctaatcctataacctcc
tcagctcactccctccagagcaaaaatggtacagagtgctgatataaaag
atgctttctttgctgaagtacatccctcagcagccatttcgcttggagtg
gagggattcttgacttgacaaccggacaatgacttgagctgttactacgg
gtaaactacccacttaaagctcatcggattagcctcctgagcgtgactcc
agatatacctgcctcctaatgttgatagatactag
gaattcctggtgaggggagatccttgatggtctaaactcaggaggatagc
tgacatccacatgtctctggcacacagaatctggactggcaccgaaatca
ggaacttcaccaccactgcaggaagtaggcctatagtgaggtccacttcc
aattctccgcgggagttgtgaactcttccgacattctttagctcgtctgt
tcttgaaccaggtctggaaaacaaaggagacatcagaggaatacctgatt
gcccctaacgggaccacaggttgaagcctttagatgggaagtgtttttat
agccatagaaactgcatgaggcataaacagagaagtctgatgctctaaat
cccaaagagatcgcagtaaggtaggatgtatatgacttggcaccaaaatc
tggggaagattcaggtagtgtgtcctgtgtcttagtagaagccgtggtgt
atgggtctctaagaccctgcaggaaaataatcatgacccaaaatggtcaa
ggcaaagcgctactgtcctttctttcattttttttgagaatgtgtttctc
tgtgcatgcttggctcacatagaaatcgctctgaagaatatgcttgtctc
aggctcacagagatagaactgcctcttcctctcaggtgctaggaataaag
tactcatcctcccctggccagtccagattctttggtttctacaaagacac
tggtcctacaactgatcttgttataatccagagcatttatattgtaaaag
acttgaccagtgtactttctattgagaaaaaaaattcttaccaatacttt
taatttatgtcatgccttttatatcttaaatgggccccacaatttgctgg
atagttgatgataaccctgagaaactgggattctagctcctgggctatta
caaataagactgctataaaaaatagtggaatacttgtctttttggtatag
tagagcatcttttaggtatatgaccagggagtgacatgactaggtcttca
gtttcttctttcatcacattctaagacagaatgtgctggggacttgagtc
tttgatctagaacaatgctgggtgctgtatatggtgaatcttaaggttat
ttaattttcattcctggaaggactaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_16086266_16087386
seq2: B6Ng01-055N17.g_66_1193 (reverse)

seq1  CCTTAGTCAT--CAGGGAAATGAAAATTAAAATAACCTTAAGATTCCACA  48
      |||||||| |  ||||  |||||||||| |||||||||||||||||  ||
seq2  CCTTAGTCCTTCCAGG--AATGAAAATT-AAATAACCTTAAGATTCACCA  47

seq1  T-TACAGCAACCAGCA-TGTCTAAGATCAAAGACTCAAGT-CCCAGCACA  95
      | ||||||| |||||| |||   ||||||||||||||||| |||||||||
seq2  TATACAGCACCCAGCATTGTTCTAGATCAAAGACTCAAGTCCCCAGCACA  97

seq1  TTCTGTC-TAGGATGTGATGAAAGAGAAACCTGAAGACCTAGTCATGTCA  144
      ||||||| ||| |||||||||||||  || ||||||||||||||||||||
seq2  TTCTGTCTTAGAATGTGATGAAAGAAGAAACTGAAGACCTAGTCATGTCA  147

seq1  CT-CCTGGTCATATACCTAAAAGATGCTCTACTATACCAAAAAGACAGGT  193
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCCCTGGTCATATACCTAAAAGATGCTCTACTATACCAAAAAGACAAGT  197

seq1  ATTCCACTA-TTTTTATAGCAGTCTTATTTGTAATAG-CCAGGAGCTAGA  241
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  ATTCCACTATTTTTTATAGCAGTCTTATTTGTAATAGCCCAGGAGCTAGA  247

seq1  ATCCCAGTTTCTCAGGGTTATCATCAACTATCCAGC-AATTGTGGGGCCC  290
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCCCAGTTTCTCAGGGTTATCATCAACTATCCAGCAAATTGTGGGGCCC  297

seq1  ATTTAAGATATAAAAGGCATGACATAAATTAAAAGTATTGGTAAGAATTT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGATATAAAAGGCATGACATAAATTAAAAGTATTGGTAAGAATTT  347

seq1  TTTTTCTCAATAGAAAGTACACTGGTCAAGTCTTTTACAATATAAATGCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCAATAGAAAGTACACTGGTCAAGTCTTTTACAATATAAATGCT  397

seq1  CTGGATTATAACAAGATCAGTTGTAGGACCAGTGTCTTTGTAGAAACCAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTATAACAAGATCAGTTGTAGGACCAGTGTCTTTGTAGAAACCAA  447

seq1  AGAATCTGGACTGGCCAGGGGAGGATGAGTACTTTATTCCTAGCACCTGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTGGACTGGCCAGGGGAGGATGAGTACTTTATTCCTAGCACCTGA  497

seq1  GAGGAAGAGGCAGTTCTATCTCTGTGAGCCTGAGACAAGCATATTCTTCA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAGGCAGTTCTATCTCTGTGAGCCTGAGACAAGCATATTCTTCA  547

seq1  GAGCGATTTCTATGTGAGCCAAGCATGCACAGAGAAACACATTCTCAAAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGATTTCTATGTGAGCCAAGCATGCACAGAGAAACACATTCTCAAAA  597

seq1  AAAATGAAAGAAAGGACAGTAGCGCTTTGCCTTGACCATTTTGGGTCATG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAGAAAGGACAGTAGCGCTTTGCCTTGACCATTTTGGGTCATG  647

seq1  ATTATTTTCCTGCAGGGTCTTAGAGACCCATACACCACGGCTTCTACTAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCCTGCAGGGTCTTAGAGACCCATACACCACGGCTTCTACTAA  697

seq1  GACACAGGACACACTACCTGAATCTTCCCCAGATTTTGGTGCCAAGTCAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGACACACTACCTGAATCTTCCCCAGATTTTGGTGCCAAGTCAT  747

seq1  ATACATCCTACCTTACTGCGATCTCTTTGGGATTTAGAGCATCAGACTTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCCTACCTTACTGCGATCTCTTTGGGATTTAGAGCATCAGACTTC  797

seq1  TCTGTTTATGCCTCATGCAGTTTCTATGGCTATAAAAACACTTCCCATCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTATGCCTCATGCAGTTTCTATGGCTATAAAAACACTTCCCATCT  847

seq1  AAAGGCTTCAACCTGTGGTCCCGTTAGGGGCAATCAGGTATTCCTCTGAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTCAACCTGTGGTCCCGTTAGGGGCAATCAGGTATTCCTCTGAT  897

seq1  GTCTCCTTTGTTTTCCAGACCTGGTTCAAGAACAGACGAGCTAAAGAATG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTTTGTTTTCCAGACCTGGTTCAAGAACAGACGAGCTAAAGAATG  947

seq1  TCGGAAGAGTTCACAACTCCCGCGGAGAATTGGAAGTGGACCTCACTATA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAGAGTTCACAACTCCCGCGGAGAATTGGAAGTGGACCTCACTATA  997

seq1  GGCCTACTTCCTGCAGTGGTGGTGAAGTTCCTGATTTCGGTGCCAGTCCA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTACTTCCTGCAGTGGTGGTGAAGTTCCTGATTTCGGTGCCAGTCCA  1047

seq1  GATTCTGTGTGCCAGAGACATGTGGATGTCAGCTATCCTCCTGAGTTTAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTGTGCCAGAGACATGTGGATGTCAGCTATCCTCCTGAGTTTAG  1097

seq1  ACCATCAAGGATCTCCCCTCACCAGGAATTC  1121
      |||||||||||||||||||||||||||||||
seq2  ACCATCAAGGATCTCCCCTCACCAGGAATTC  1128