BAC Information

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BAC

Clone NameB6Ng01-057L07
Chromosome7 (Build37)
Map Location 3,567,574 - 3,659,335
singlet/doubletdoublet
Overlap geneOscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109
Downstream geneLilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057L07.bB6Ng01-057L07.g
ACCDH879496DH879497
length1,082219
definitionDH879496|Mus musculus domesticus DNA, BAC clone: B6Ng01-057L07, 5' end.DH879497|Mus musculus domesticus DNA, BAC clone: B6Ng01-057L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,567,574 - 3,568,669)(3,659,117 - 3,659,335)
sequence
gaattccatatgaacagatatagccctcagcccagccaaggatccacaca
caggggagggacagctcacagagagtcgacagctggagtatcagcgacag
gaccatggtgggcactctccgtggagctgaggaaaaggttgaccctgcct
ttttcactctgaggaaatgaagcaacaccagaaagccatgtgagagtcct
gtttagggaacagaggagtcaggtggaggctcctgggtaactgtgtcata
gtttcattgtcttggaaaaagttgcaagatggaacagtcatagcctctgg
tgttctttaatttaacttaaaagttggggaggagggctgaggacgttgtc
gctaagtagaagaccacttgcccagagtagcctcagcactgaggagagaa
aggaaaggggcaggtgggaggaagaaaaatggaaaagaggaaaaaaacaa
caacaacaacaaaaaaaacaaaacaaaaaggtagaaagggaaaaagaagc
ttgctgtacaatatgtactatgccggtaacaagagaaggctcagactcca
ttactgctctcactgtccagtccagatatgttaatttttttaagtgatgt
gcattatcttagaggctcaggcttgtaatctcaccagcttgagaaaccaa
ggcaggaggctgtcaagttcaaagattgcagggccaacttgagccattta
atgccctgtctcaaaataaaaagtaatgaaagggctgaaaaatgtggctc
aacaataaaagatatgcctaaaatccaccagcagggacctgggatagtag
aatctatcagcaagtggacggaggagtggctcaatcggagatgggtagcc
tagcctgtcctggtttcagttttcagcactaagggcagatggagggaaaa
gccatgatctgcatgctagtaacacaaagcacaggcagtccttatatatt
tgggattatttagaatttcagaatgagctatgtctagatgtgatctcaat
gtaagctgactttttttttttagtattagagtaccttttgcagtcttcga
accacccgagagagggcgtcagattccattgc
aacaccaatgtttcactttgaatgagagctttgttctgtaaggtgaatgc
cttctgatctactcaaatcacattttcatgtagcctaagtgactaaacca
tggatggaattaccagtcagacctccagatagtggtcacttgccattgcc
ttagcagctttacagtactttttcctgcatcaaagcttgccttaaaagat
gaccggggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_3567574_3568669
seq2: B6Ng01-057L07.b_45_1126

seq1  GAATTCCATATGAACAGATATAGCCCTCAGCCCAGCCAAGGATCCACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATGAACAGATATAGCCCTCAGCCCAGCCAAGGATCCACACA  50

seq1  CAGGGGAGGGACAGCTCACAGAGAGTCGACAGCTGGAGTATCAGCGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAGGGACAGCTCACAGAGAGTCGACAGCTGGAGTATCAGCGACAG  100

seq1  GACCATGGTGGGCACTCTCCGTGGAGCTGAGGAAAAGGTTGACCCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGGTGGGCACTCTCCGTGGAGCTGAGGAAAAGGTTGACCCTGCCT  150

seq1  TTTTCACTCTGAGGAAATGAAGCAACACCAGAAAGCCATGTGAGAGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTCTGAGGAAATGAAGCAACACCAGAAAGCCATGTGAGAGTCCT  200

seq1  GTTTAGGGAACAGAGGAGTCAGGTGGAGGCTCCTGGGTAACTGTGTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGGAACAGAGGAGTCAGGTGGAGGCTCCTGGGTAACTGTGTCATA  250

seq1  GTTTCATTGTCTTGGAAAAAGTTGCAAGATGGAACAGTCATAGCCTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTGTCTTGGAAAAAGTTGCAAGATGGAACAGTCATAGCCTCTGG  300

seq1  TGTTCTTTAATTTAACTTAAAAGTTGGGGAGGAGGGCTGAGGACGTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTAATTTAACTTAAAAGTTGGGGAGGAGGGCTGAGGACGTTGTC  350

seq1  GCTAAGTAGAAGACCACTTGCCCAGAGTAGCCTCAGCACTGAGGAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTAGAAGACCACTTGCCCAGAGTAGCCTCAGCACTGAGGAGAGAA  400

seq1  AGGAAAGGGGCAGGTGGGAGGAAGAAAAATGGAAAAGAGGAAAAAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGGGCAGGTGGGAGGAAGAAAAATGGAAAAGAGGAAAAAAACAA  450

seq1  CAACAACAACAAAAAAAACAAAACAAAAAGGTAGAAAGGGAAAAAGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAACAAAAAAAACAAAACAAAAAGGTAGAAAGGGAAAAAGAAGC  500

seq1  TTGCTGTACAATATGTACTATGCCGGTAACAAGAGAAGGCTCAGACTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTACAATATGTACTATGCCGGTAACAAGAGAAGGCTCAGACTCCA  550

seq1  TTACTGCTCTCACTGTCCAGTCCAGATATGTTAATTTTTTTAAGTGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTCTCACTGTCCAGTCCAGATATGTTAATTTTTTTAAGTGATGT  600

seq1  GCATTATCTTAGAGGCTCAGGCTTGTAATCTCACCAGCTTGAGAAACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATCTTAGAGGCTCAGGCTTGTAATCTCACCAGCTTGAGAAACCAA  650

seq1  GGCAGGAGGCTGTCAAGTTCAAAGATTGCAGGGCCAACTTGAGCCATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAGGCTGTCAAGTTCAAAGATTGCAGGGCCAACTTGAGCCATTTA  700

seq1  ATGCCCTGTCTCAAAATAAAAAGTAATGAAAGGGCTGAAAAATGTGGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTGTCTCAAAATAAAAAGTAATGAAAGGGCTGAAAAATGTGGCTC  750

seq1  AACAATAAAAGATATGCCTAAAATCCACCAGCAGGGACCTGGGATAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAAAAGATATGCCTAAAATCCACCAGCAGGGACCTGGGATAGTAG  800

seq1  AATCTATCAGCAAGTGGACGGAGGAGTGGCTCAATCGGAGATGGGTAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATCAGCAAGTGGACGGAGGAGTGGCTCAATCGGAGATGGGTAGCC  850

seq1  TAGCCTGTCCTGGTTTCAGTTTTCAGCACTAAGGGGCAGATGGAGGGAAA  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGCCTGTCCTGGTTTCAGTTTTCAGCACTAA-GGGCAGATGGAGGGAAA  899

seq1  AGCCATGATCTGCATGCTAGTAACACAAAGCACAGGCAGTCCTTAATATA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGCCATGATCTGCATGCTAGTAACACAAAGCACAGGCAGTCCTT-ATATA  948

seq1  TTTGGGATTAATTTAGAATTTCCAGAATGAGCTTATGTCTAGATGTGATC  1000
      ||||||||| ||||||||||| |||||||||| |||||||||||||||||
seq2  TTTGGGATT-ATTTAGAATTT-CAGAATGAGC-TATGTCTAGATGTGATC  995

seq1  TCAATGTAAAGCTGACTTTTTTTTTTTTAAGGTTTATTTATGAGTACACT  1050
      ||||||| |||||||||||||||||||  ||  |||     |||||| ||
seq2  TCAATGT-AAGCTGACTTTTTTTTTTT--AGTATTA-----GAGTAC-CT  1036

seq1  GTTGCAGTCTTCAGACACACCAGA-AGAGGGCGTCAGATCCCATTGC  1096
       ||||||||||| ||  |||| || |||||||||||||| |||||||
seq2  TTTGCAGTCTTC-GAACCACCCGAGAGAGGGCGTCAGATTCCATTGC  1082

seq1: chr7_3659117_3659335
seq2: B6Ng01-057L07.g_74_292 (reverse)

seq1  CCCCCCCCCCCCCCCGGTCATCTTTTAAGGCAAGCTTTGATGCAGGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCCGGTCATCTTTTAAGGCAAGCTTTGATGCAGGAAAA  50

seq1  AGTACTGTAAAGCTGCTAAGGCAATGGCAAGTGACCACTATCTGGAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGTAAAGCTGCTAAGGCAATGGCAAGTGACCACTATCTGGAGGTC  100

seq1  TGACTGGTAATTCCATCCATGGTTTAGTCACTTAGGCTACATGAAAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGTAATTCCATCCATGGTTTAGTCACTTAGGCTACATGAAAATGT  150

seq1  GATTTGAGTAGATCAGAAGGCATTCACCTTACAGAACAAAGCTCTCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGTAGATCAGAAGGCATTCACCTTACAGAACAAAGCTCTCATTC  200

seq1  AAAGTGAAACATTGGTGTT  219
      |||||||||||||||||||
seq2  AAAGTGAAACATTGGTGTT  219