BAC Information

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BAC

Clone NameB6Ng01-059A10
Chromosome7 (Build37)
Map Location 24,318,666 - 24,319,170
singlet/doubletsinglet
Overlap geneLOC667651
Upstream geneEG667512, LOC100043061, LOC100043638, LOC667527, EG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032
Downstream geneLOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059A10.bB6Ng01-059A10.g
ACCDH880442DH880443
length1,236950
definitionDH880442|Mus musculus domesticus DNA, BAC clone: B6Ng01-059A10, 5' end.DH880443|Mus musculus domesticus DNA, BAC clone: B6Ng01-059A10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagctttggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaagtgaaagatctgtatggtaaaaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaactagaaggaaaaatttgcaaattcatctggaataacaataaacc
taggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattctgataaaaactgca
tggtactggtatagagacagacaagtagaccactggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaattcgtgctcg
cacaactgttgttatcatgtagagatgcaaatcgatcatacttatctctt
gtactaagtcaatctagtgatcagactgacataaaacagagaaactgaaa
ctatagagagaagtggaaagctgaatatctggcacagggaaatcgaacga
acgcatgcttgtactgaagatcgaaatgacatgactatgaatccaagtcg
caagcaaagaaccgtcatagcaaagaccaattgagacttcatcgatcgat
gactattccacatatagactcgagggggactcccat
gaattctcacacattaatagtgggagacttcaacaccccactttcactaa
ttgccaagacatccagaccgcaaaaacaaaacaaaacaaaacaaaacaaa
aaataaacaaaataaacaactaaacagattgtgatggtttttatattctt
ggaccagtgagtggcaccattcggaagtgagacctggttggagtaggtgt
gtcactgtgggtgtgggcttaatactctcaccctagatggctagaagtca
atcttccactagcagcctttggatgaagacgtagaactctcaattctgcc
tgagtcatgcctgcctggatgctgccaggctcccacattgatgataatgg
acagctcctctgaacctgtaagtcagtcctaattaaatgttttttataag
aattgccttggtcatggtgtttgttcacagacatgaaaccctaactaaga
cacagataaataatgaaactaactgacagtataagtcaaatggacctaac
agacatctatagactatttcacctaaacacaaaaaaatatatcttcttct
cagggaatcatgattctttcttcaaaattgaccatataattagtcacaaa
acaagcttcaacagacacaagaaaattgaaataataccttcggtcttatc
agaccaacatgaatagaactagacttcaacaacagcagactcactggaaa
tcctacacacttatggaaatcgaacaactctctatgcaatgatttttggg
tcagggaagaaagaaagagagaaaatgaagaatttctagaattcaatgaa
aagtaaggcacaggatacccaaaatttctggacacaatgaaagcagtgct
aagaggaaagtccacagcactaagtgccttcataaaataatggaaaaatt
ctcatatgtaaagcttaaaggaggaggaggaggaagaggaggaggaagag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24318666_24319170
seq2: B6Ng01-059A10.g_975_1017 (reverse)

seq1  CTCTTCCTCCTCCTCCTTCCATTGCCCACTTCACCAATGGACAGCATCAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCCACCCTATTCAGCCTGCTTTATGGAGAATATGGCTGCATGTCTAGCTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGAACAGATTTGGACAGGGGGGTTGTGTGCCATTTTCAAGTCTTCCAAGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGCTCAAGGAAGGGGGAGGGGAGAATTGGCATCAAGAAACATGTCAAGTA  200
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTTCTATATAGTAAAAAACTTGCATCTGGCATGTTCCCAAATTATTTG  250
                                                        
seq2  --------------------------------------------------  0

seq1  AGCTGGGGACTGTGTGCCCAAGAAACTGTATCTAACACTGAAGGTCCCTT  300
                                                        
seq2  --------------------------------------------------  0

seq1  CTGATCCTGCAGGTGCAGAGGTTCTGGGGGATGTACTGGACTGTCACTGT  350
                                                        
seq2  --------------------------------------------------  0

seq1  GCAGCATCTGGATCAAAGCATGCCACAGCAACTTCCAACATCCTGTTCTC  400
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTGGGTACTGGATTAAAAACAATCTACTCCATGTCCCTCCTCCTCCTC  450
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTGATCTGC  500
               ||| ||||||||||| |||||||||||||||||| |   ||
seq2  ---------CTCTTCCTCCTCCTCTTCCTCCTCCTCCTCCTTTAA---GC  38

seq1  TTTAC  505
      |||||
seq2  TTTAC  43