BAC Information

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BAC

Clone NameB6Ng01-060L14
Chromosome7 (Build37)
Map Location 104,667,702 - 104,791,623
singlet/doubletdoublet
Overlap geneInts4, 1810020D17Rik, Rsf1, LOC622994
Upstream geneOdz4, Nars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14
Downstream geneLOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060L14.bB6Ng01-060L14.g
ACCDH881619DH881620
length1,1871,111
definitionDH881619|Mus musculus domesticus DNA, BAC clone: B6Ng01-060L14, 5' end.DH881620|Mus musculus domesticus DNA, BAC clone: B6Ng01-060L14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,790,420 - 104,791,623)(104,667,702 - 104,668,809)
sequence
gaattcattgtactaaatatttttcttttcatgtttgggatcagaattta
actatattctcagtatgacctcatcaggatcaagtgagattatacctcac
attattttgtgaaccaaaaggatattaagtatacataccatgagataagt
atgtattgttagtggtgatcaaaatgcaggctttatacatactatgcaag
taccctctctaaactacatccccacccccaacctagtaataccattttta
gggagaatgtgctgggtatcaaatccatgtcctccacttgttaggcaagc
actccactaattaagtgtatccctgaatcaagtcatttctcttgtctgtc
ttgagatagggactttctacaaagcctggatctccttgtactttcactat
gtaaatgaggcaggcttcaaactcacaaagagctgcctgtctctgctggg
attaaaagcatgtgctaccatgtagctgaagtgatattcttgaggaagcc
aaaatacacttttgatatttaacattcacaaaaagaaagacttagcgggc
aagtcagttcacaacatttaccagtagtagtagtttattcagttacaagc
tagctaaaacaccatgtcccaagcatctcatagtaagtatgaatactccc
ggtaagaaatctgaagaaagctaatgttacccagaaaacatacactatac
aactaggactttacaaagcaagggacttcacaggagcctgagatccatcc
aggaatgctagctaagctactcaccaccctcataccttcaacttcttact
gtacaagtctgtatacaatataaactgaacacgtgtccaccacatgttta
aaaactaggttagcgggtatcagtcagtgaactcaaatgtttctgcatgg
tctcaaacattttctgcattatgtgggtcagattactgtgtataccaatt
aagagtaacacaaacagggctggtagtacatgcttttaatctcatcagga
ggcagaggcagacagtctcgagttcagactagctaggaatatacagtgag
agacatcttcaaaaaagcaccaccaccaccaaaagaaacaaaatcaaaaa
caaacgaaatattcttaaggctaaaacaacctgctatttcactaaataag
ccctattgctacatgggaaaacattgactttagacat
gaattcaccatcaggtaagcagtctttgtctgcttcctctgagagctagc
attctctcatgctcggcctgatagctttgaattcctctcatttctgattg
ttggcctttacccttgagattgtagtaggtttattattttttaatgctgt
ttgcattcatgagtcaaagagtactgcaaatagaaatagaaatagttaca
aagaacacgtgcctttagtcctagcacttgggagtcaaaggcaggtgaat
ctctgaattcagagccattctggtttacagatcacattccaggacagtca
aggctacacagagaaccctgtttcaggagaaaaaaaagcaaaccagaaag
aaagagttagaaagactctttgatcctttctttcttgtatattagttaaa
tgagtgacagacacacagggaaacaatggtttagtaagacagcagattca
ccctcccttagccttaggactaaggtcatcataggtccatgctcattttt
tcctaggtctgtcttctgtctgtgtctgtgttttcccactatctctattt
ctagtctattttttcctgtgggaagaagaaaaggccttcattctgcattt
cttactttgaaagacaggtcccaaaaggtgtatcttccagttttccatag
tgttgactggaaacagtcacatgattctctctctcattagggaacctggg
tcagtgatctgtattctaggtgactagtgtctgtgtgatggtggctctat
taggaagatgctctgctgcacaacatgggcccatataatgggaaatagtg
tcctgccaacctttttccagcaagttttgctggacgcttttgtatactat
gggccagccatagctctggggagccagggttccactgctcttggtagcta
tgtgaagtgggcttcagctctgttttatttttcttcttctccatgaatag
tgtgtagtttggaggccactaatagaggcttctggccccaagctcaggaa
aaataagctttgattcttgattcatttcatctaattagcatttagggctt
gtctttgaccgtttattggttgggcctaaagcaaatgcaaatgtctataa
aaccagccaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_104790420_104791623
seq2: B6Ng01-060L14.b_49_1235 (reverse)

seq1  ATGTCT-AAGT---GGTTTTTCCATGGTAGCAATAGGGCTTTATTTAGTG  46
      |||||| ||||    ||||| |||| ||||||||||||| ||||||||||
seq2  ATGTCTAAAGTCAATGTTTTCCCAT-GTAGCAATAGGGC-TTATTTAGTG  48

seq1  AAATAGCAGGTTGTTTTTAGCCTTTATGAATATTT-TTTTGTTTTTGTTT  95
      ||||||||||||| |||||||| ||| ||||||||  ||||||||||   
seq2  AAATAGCAGGTTG-TTTTAGCC-TTAAGAATATTTCGTTTGTTTTTG---  93

seq1  TTTGTTTTTTTGTTTTCTTTTTGGTGGTGGTGGTTGCTGTTTTTTGGAGA  145
             ||||||||   ||||||||||||||| |||  ||||||| |||
seq2  ------ATTTTGTTT--CTTTTGGTGGTGGTGG-TGC--TTTTTTGAAGA  132

seq1  CTGTCTCTCACTGTATATTCCTGGCTAGTCTTGAACTCGGAGACTGTCTG  195
       ||||||||||||||||||||| ||||||| ||||||| |||||||||||
seq2  -TGTCTCTCACTGTATATTCCTAGCTAGTC-TGAACTC-GAGACTGTCTG  179

seq1  CCTCTGCCTCCTGATGAGATTAAAAGGCATGTACTACCAGGCCCTGTTTG  245
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  CCTCTGCCTCCTGATGAGATTAAAA-GCATGTACTACCA-GCCCTGTTTG  227

seq1  TGTTACTCTTAATTGGTATACACAGTAATTCTGA-CCACATAATGCAG-A  293
      |||||||||||||||||||||||||||| ||||| ||||||||||||| |
seq2  TGTTACTCTTAATTGGTATACACAGTAA-TCTGACCCACATAATGCAGAA  276

seq1  AATGTTTGAGACCATGCAGAAACATTTGAGTTCACTGACTGATACCCGCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGAGACCATGCAGAAACATTTGAGTTCACTGACTGATACCCGCT  326

seq1  AACCTAGTTTTTAAACATGTGGTGGACACGTGTTCAGTTTATATTGTATA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGTTTTTAAACATGTGGTGGACACGTGTTCAGTTTATATTGTATA  376

seq1  CAGACTTGTACAGTAAGAAGTTGAAGGTATGAGGGTGGTGAGTAGCTTAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTGTACAGTAAGAAGTTGAAGGTATGAGGGTGGTGAGTAGCTTAG  426

seq1  CTAGCATTCCTGGATGGATCTCAGGCTCCTGTGAAGTCCCTTGCTTTGTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATTCCTGGATGGATCTCAGGCTCCTGTGAAGTCCCTTGCTTTGTA  476

seq1  AAGTCCTAGTTGTATAGTGTATGTTTTCTGGGTAACATTAGCTTTCTTCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTAGTTGTATAGTGTATGTTTTCTGGGTAACATTAGCTTTCTTCA  526

seq1  GATTTCTTACCGGGAGTATTCATACTTACTATGAGATGCTTGGGACATGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTACCGGGAGTATTCATACTTACTATGAGATGCTTGGGACATGG  576

seq1  TGTTTTAGCTAGCTTGTAACTGAATAAACTACTACTACTGGTAAATGTTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGCTAGCTTGTAACTGAATAAACTACTACTACTGGTAAATGTTG  626

seq1  TGAACTGACTTGCCCGCTAAGTCTTTCTTTTTGTGAATGTTAAATATCAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGACTTGCCCGCTAAGTCTTTCTTTTTGTGAATGTTAAATATCAA  676

seq1  AAGTGTATTTTGGCTTCCTCAAGAATATCACTTCAGCTACATGGTAGCAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTATTTTGGCTTCCTCAAGAATATCACTTCAGCTACATGGTAGCAC  726

seq1  ATGCTTTTAATCCCAGCAGAGACAGGCAGCTCTTTGTGAGTTTGAAGCCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTAATCCCAGCAGAGACAGGCAGCTCTTTGTGAGTTTGAAGCCT  776

seq1  GCCTCATTTACATAGTGAAAGTACAAGGAGATCCAGGCTTTGTAGAAAGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTTACATAGTGAAAGTACAAGGAGATCCAGGCTTTGTAGAAAGT  826

seq1  CCCTATCTCAAGACAGACAAGAGAAATGACTTGATTCAGGGATACACTTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCTCAAGACAGACAAGAGAAATGACTTGATTCAGGGATACACTTA  876

seq1  ATTAGTGGAGTGCTTGCCTAACAAGTGGAGGACATGGATTTGATACCCAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGGAGTGCTTGCCTAACAAGTGGAGGACATGGATTTGATACCCAG  926

seq1  CACATTCTCCCTAAAAATGGTATTACTAGGTTGGGGGTGGGGATGTAGTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTCCCTAAAAATGGTATTACTAGGTTGGGGGTGGGGATGTAGTT  976

seq1  TAGAGAGGGTACTTGCATAGTATGTATAAAGCCTGCATTTTGATCACCAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGGGTACTTGCATAGTATGTATAAAGCCTGCATTTTGATCACCAC  1026

seq1  TAACAATACATACTTATCTCATGGTATGTATACTTAATATCCTTTTGGTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATACATACTTATCTCATGGTATGTATACTTAATATCCTTTTGGTT  1076

seq1  CACAAAATAATGTGAGGTATAATCTCACTTGATCCTGATGAGGTCATACT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATAATGTGAGGTATAATCTCACTTGATCCTGATGAGGTCATACT  1126

seq1  GAGAATATAGTTAAATTCTGATCCCAAACATGAAAAGAAAAATATTTAGT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATAGTTAAATTCTGATCCCAAACATGAAAAGAAAAATATTTAGT  1176

seq1  ACAATGAATTC  1204
      |||||||||||
seq2  ACAATGAATTC  1187

seq1: chr7_104667702_104668809
seq2: B6Ng01-060L14.g_67_1177

seq1  GAATTCACCATCAGGTAAGCAGTCTTTGTCTGCTTCCTCTGAGAGCTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATCAGGTAAGCAGTCTTTGTCTGCTTCCTCTGAGAGCTAGC  50

seq1  ATTCTCTCATGCTCGGCCTGATAGCTTTGAATTCCTCTCATTTCTGATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCATGCTCGGCCTGATAGCTTTGAATTCCTCTCATTTCTGATTG  100

seq1  TTGGCCTTTACCCTTGAGATTGTAGTAGGTTTATTATTTTTTAATGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTTACCCTTGAGATTGTAGTAGGTTTATTATTTTTTAATGCTGT  150

seq1  TTGCATTCATGAGTCAAAGAGTACTGCAAATAGAAATAGAAATAGTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTCATGAGTCAAAGAGTACTGCAAATAGAAATAGAAATAGTTACA  200

seq1  AAGAACACGTGCCTTTAGTCCTAGCACTTGGGAGTCAAAGGCAGGTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACGTGCCTTTAGTCCTAGCACTTGGGAGTCAAAGGCAGGTGAAT  250

seq1  CTCTGAATTCAGAGCCATTCTGGTTTACAGATCACATTCCAGGACAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAATTCAGAGCCATTCTGGTTTACAGATCACATTCCAGGACAGTCA  300

seq1  AGGCTACACAGAGAACCCTGTTTCAGGAGAAAAAAAAGCAAACCAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACACAGAGAACCCTGTTTCAGGAGAAAAAAAAGCAAACCAGAAAG  350

seq1  AAAGAGTTAGAAAGACTCTTTGATCCTTTCTTTCTTGTATATTAGTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTAGAAAGACTCTTTGATCCTTTCTTTCTTGTATATTAGTTAAA  400

seq1  TGAGTGACAGACACACAGGGAAACAATGGTTTAGTAAGACAGCAGATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGACAGACACACAGGGAAACAATGGTTTAGTAAGACAGCAGATTCA  450

seq1  CCCTCCCTTAGCCTTAGGACTAAGGTCATCATAGGTCCATGCTCATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTTAGCCTTAGGACTAAGGTCATCATAGGTCCATGCTCATTTTT  500

seq1  TCCTAGGTCTGTCTTCTGTCTGTGTCTGTGTTTTCCCACTATCTCTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGTCTGTCTTCTGTCTGTGTCTGTGTTTTCCCACTATCTCTATTT  550

seq1  CTAGTCTATTTTTTCCTGTGGGAAGAAGAAAAGGCCTTCATTCTGCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTATTTTTTCCTGTGGGAAGAAGAAAAGGCCTTCATTCTGCATTT  600

seq1  CTTACTTTGAAAGACAGGTCCCAAAAGGTGTATCTTCCAGTTTTCCATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTTGAAAGACAGGTCCCAAAAGGTGTATCTTCCAGTTTTCCATAG  650

seq1  TGTTGACTGGAAACAGTCACATGATTCTCTCTCTCATTAGGGAACCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTGGAAACAGTCACATGATTCTCTCTCTCATTAGGGAACCTGGG  700

seq1  TCAGTGATCTGTATTCTAGGTGACTAGTGTCTGTGTGATGGTGGCTCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGATCTGTATTCTAGGTGACTAGTGTCTGTGTGATGGTGGCTCTAT  750

seq1  TAGGAAGATGCTCTGCTGCACAACAT-GGCCCATATAATGGGAAATAGTG  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGGAAGATGCTCTGCTGCACAACATGGGCCCATATAATGGGAAATAGTG  800

seq1  TCCTGCCAACC-TTTTCCAGCAAG-TTTGCT-GACGCTTTTGTATACTAT  846
      ||||||||||| |||||||||||| |||||| ||||||||||||||||||
seq2  TCCTGCCAACCTTTTTCCAGCAAGTTTTGCTGGACGCTTTTGTATACTAT  850

seq1  GGGCCAGCCATAGCTCT-GGGAGCCAGGGTTCCACTGCTCTTGGTAGCTA  895
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGGCCAGCCATAGCTCTGGGGAGCCAGGGTTCCACTGCTCTTGGTAGCTA  900

seq1  TGTGAAGTGGGCTTCAGCTCTGTTTTTCTTTTCTCCTTCTCCATG-ATAG  944
      ||||||||||||||||||||||||||  |||||| |||||||||| ||||
seq2  TGTGAAGTGGGCTTCAGCTCTGTTTTATTTTTCTTCTTCTCCATGAATAG  950

seq1  TGTGTAGTTTTGGAGGCCACTAATAGAGGCTTCTGGCCCCAAGCCCAGG-  993
      ||||||| |||||||||||||||||||||||||||||||||||| |||| 
seq2  TGTGTAG-TTTGGAGGCCACTAATAGAGGCTTCTGGCCCCAAGCTCAGGA  999

seq1  AAAATAAGCTTTGATTCCTGATTCATTCCCATCTAATTAAGCATTTAGGG  1043
      ||||||||||||||||| |||||||||  ||||||||| |||||||||||
seq2  AAAATAAGCTTTGATTCTTGATTCATT-TCATCTAATT-AGCATTTAGGG  1047

seq1  CTTGTCCTTGACGGTTTATTGTGTTGGCACTAAAGCAAATGCAGAATGCA  1093
      |||||| ||||| |||||||| |||||  |||||||||||||| ||||  
seq2  CTTGTCTTTGACCGTTTATTG-GTTGGGCCTAAAGCAAATGCA-AATGTC  1095

seq1  TA-AAAACAAGCCAAC  1108
      || ||||| |||||||
seq2  TATAAAACCAGCCAAC  1111