BAC Information

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BAC

Clone NameB6Ng01-061M14
Chromosome7 (Build37)
Map Location 109,381,438 - 109,381,989
singlet/doubletsinglet
Overlap geneFrag1
Upstream geneFchsd2, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98
Downstream geneRhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061M14.bB6Ng01-061M14.g
ACCDH882370DH882371
length1,168349
definitionDH882370|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M14, 5' end.DH882371|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctccaat
ggaggagctagagaaagtactcaaggagctaaaggatcttcaacctatag
gtggaacaacattatgactatcagtacccttgagcctcttgactcttagc
ttcatatgtatcaaagatggcctagtcgccatcacttgaaggaaaggtcc
attggacacccgaactttgtgtgcctcgttacaggatactccaggcctaa
gagggagatgggtggata
gaattcaattcccagcaaccacatggtggctcacaaccatctgtaaaggg
atctgatgcccttttctggtctgattttgtgtgtatgtctgatatccaca
aaggccacaagagggcattagatcccctgagctggagctccaggcacttg
tgctgggatgcaatccaaggctgtctgtaagagcagcccgtgcttgtagc
accaaaccatctctccacccctgatactttctgtaaaaggatgtaaaata
gtctctctctctctctctctctctctctctctctctctctgtgtgtgtgt
gtgtgagagagagagagagagagagagagagagagagagagtatgcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_109381438_109381989
seq2: B6Ng01-061M14.g_75_407

seq1  TTCAATTTTCAGCAACTACATGGTGGCTCCCAACCATCTGTAATGGGATC  50
      |||||||  ||||||| |||||||||||| ||||||||||||| ||||||
seq2  TTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGGGATC  50

seq1  TGATGCCCTCTTCTGGTGTGTCTGAAGATAGCCACAGTGTACTCACAGAC  100
      ||||||||| ||||||| ||                              
seq2  TGATGCCCTTTTCTGGTCTG------------------------------  70

seq1  GTACAATAAATAAATTAAAAAAAAAAAAAAAGGAACCAGGATAGAGTGGA  150
                   |||                         | | ||| |
seq2  -------------ATT-------------------------TTGTGTGTA  82

seq1  AATGCCAGTGCAGTGGCTCATGCTGCAGGAGACCACTGCCAAAACAGAGA  200
                   || || ||           ||||     |||      
seq2  -------------TGTCTGAT---------ATCCAC-----AAA------  99

seq1  CTGTGCGGACACAGACTAGAGAGTGGCGCCCAGAGGAGGGACAAATAGGA  250
            || ||||      |||| |||                 ||  ||
seq2  ------GGCCACA------AGAG-GGC-----------------ATTAGA  119

seq1  TCATCTGGAGCTGGAGGTTTTGTCAGGTTGGTAAGGAATGGAGAACAAGA  300
      ||  || ||||||||| |   | ||  |||    || ||| |   |||| 
seq2  TCCCCT-GAGCTGGAGCTCCAGGCA-CTTGTGCTGGGATGCAATCCAAG-  166

seq1  AGGTAGATAAGCCTTCTATAATGAGCATGTGTGTGTGTTGGGGGTGGAGC  350
                ||  ||| ||| |||||   |   ||| |     || |||
seq2  ----------GCTGTCTGTAA-GAGCA---GCCCGTGCT-----TGTAGC  197

seq1  TTTGCCTGAGGCCAAAAGATTTATTCTTTCATGCAATAAACTGATAAAGA  400
                 |||||  || | | |   | ||  |    |||  |||| 
seq2  ----------ACCAAACCATCTCTCCACCCCTGATACTTTCTGTAAAAG-  236

seq1  GAAAGAGAGAGAACACGTGTGTGTGTGTGGGGGGGGGGCTTTTGCCTGAG  450
          ||   | || | || | | | | |                      
seq2  ----GATGTAAAATA-GTCTCTCTCTCT----------------------  259

seq1  GTCAGAAGATTTATTCTTTCATGCAATAAACCGAGTTTGTGTGTGTGTGT  500
                    ||| ||               | | | | | | | |
seq2  -------------CTCTCTC---------------TCTCTCTCTCTCTCT  281

seq1  GTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  550
       | | |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  331

seq1  GA  552
      ||
seq2  GA  333