BAC Information

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BAC

Clone NameB6Ng01-069C10
Chromosome7 (Build37)
Map Location 12,673,932 - 12,675,160
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075
Downstream geneLOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069C10.bB6Ng01-069C10.g
ACCDH887542DH887543
length1,230522
definitionDH887542|Mus musculus domesticus DNA, BAC clone: B6Ng01-069C10, 5' end.DH887543|Mus musculus domesticus DNA, BAC clone: B6Ng01-069C10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattaaagcaaaactcacagcaacctccttcaggatagttcatg
ctaaaagcatttcatgattctatacccaatgtgtataaattattctatac
acatacagtggaattctctacaacatgaacgtcaacaaagagggaaacac
acaacatggatcaatcatttcaaacccttaacctgaaaaagttgatgcac
atagacctatgacgtcttccttttcctataccccatgtgaacatgacaac
actaaggtattattgaacagaaggcttttgttttacatatgaaggtgaga
acatacagaggcatatgtaagagtccatgggaccaaaagaatgtagtaca
ttgaccttgctgatacaatgtaccaggccatggaggagggagttctgtgg
aagcaaacaagaggaaggatagacagaggaaagagggccaaggaaattaa
acaaacaaagaatgaaacaaaaacaaaaaacaaaactaaacaaaaaaaac
aaaaaataaataaataataaaaacaaaaaatcaaagtaccatgagaagca
ccaatagaaggagaaccctgacaaaaatcaagagcccaacagtaggtaga
caaagttcatgaatttcataccaaagagatccagggggaagggaagcaaa
gattagggtgctggggcaagaagtcctgagaggaaccagaattctgtaaa
atgtacttgcaatttctgtgagattacagaagttagcatcctctctgata
tgttaataggcccttcagccacttatcctgtgtgtctttgagacaaaaca
ctcttgagatgttgaaactctctgagaggctgggtgatagggaaatgcct
ttcaggccaaggccatgcaacttgcttatactttttttttgttgtttgtt
tgtttactaatgaacacctattatctcagcatgcattctgccatacattt
tgtgctccaagggctatcagaaaagctctcatcctaattcctaatttact
tcctggagttggctacccacttatgtgccattttggttttgttttctgac
agtggactaaggccaaggggtttacagttatttcagaactcctaatgaga
atgatgtcatcctgttcttgagtgaactgaaatgaacataccatctggta
tagaaaaccctgaagattcctgaatctttaagtggaggggagtctgccct
agttttgcaattcacttctatggatagcac
tcacccgaggaatacggaatggctgagaagcacctgaaaaaatgctcagc
atccttaatcatcagagaaatgcaaatcaaaccaatcctgagattccatc
tcacaccagtcagaatgtctaagatcaaaaattcaggtgacagcagatgc
tggcgaggatgtggagaaagaggaacactccttcattgttgttgggattg
caagcttgtacaaccactctggaaatcagtctggcggttcctctgaaaat
tagacatagtactactggaggatcccgcaatacctctcctgggcatatat
ccagaagatgtcccaaccggtaagaaggacatatgctccactatgttcat
agcagccttatttataatagccagaagctggaaagaacccatttatccct
caacagatgaatggatacaaaaaatgtggtacatttacacaatggagtac
tacttagctattaaaaagaatgaattttttgaaattcctaggcatatggt
tggagctggagggcatcatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12673932_12675160
seq2: B6Ng01-069C10.b_45_1274

seq1  GAATTCAATTAAAGCAAAACTCACAGCAACCTCCTTCAGGATAGTTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAAAGCAAAACTCACAGCAACCTCCTTCAGGATAGTTCATG  50

seq1  CTAAAAGCATTTCATGATTCTATACCCAATGTGTATAAATTATTCTATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGCATTTCATGATTCTATACCCAATGTGTATAAATTATTCTATAC  100

seq1  ACATACAGTGGAATTCTCTACAACATGAACGTCAACAAAGAGGGAAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAGTGGAATTCTCTACAACATGAACGTCAACAAAGAGGGAAACAC  150

seq1  ACAACATGGATCAATCATTTCAAACCCTTAACCTGAAAAAGTTGATGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATGGATCAATCATTTCAAACCCTTAACCTGAAAAAGTTGATGCAC  200

seq1  ATAGACCTATGACGTCTTCCTTTTCCTATACCCCATGTGAACATGACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCTATGACGTCTTCCTTTTCCTATACCCCATGTGAACATGACAAC  250

seq1  ACTAAGGTATTATTGAACAGAAGGCTTTTGTTTTACATATGAAGGTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGTATTATTGAACAGAAGGCTTTTGTTTTACATATGAAGGTGAGA  300

seq1  ACATACAGAGGCATATGTAAGAGTCCATGGGACCAAAAGAATGTAGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAGAGGCATATGTAAGAGTCCATGGGACCAAAAGAATGTAGTACA  350

seq1  TTGACCTTGCTGATACAATGTACCAGGCCATGGAGGAGGGAGTTCTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTTGCTGATACAATGTACCAGGCCATGGAGGAGGGAGTTCTGTGG  400

seq1  AAGCAAACAAGAGGAAGGATAGACAGAGGAAAGAGGGCCAAGGAAATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACAAGAGGAAGGATAGACAGAGGAAAGAGGGCCAAGGAAATTAA  450

seq1  ACAAACAAAGAATGAAACAAAAACAAAAAACAAAACTAAACAAAAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAGAATGAAACAAAAACAAAAAACAAAACTAAACAAAAAAAAC  500

seq1  AAAAAATAAATAAATAATAAAAACAAAAAATCAAAGTACCATGAGAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAATAAATAATAAAAACAAAAAATCAAAGTACCATGAGAAGCA  550

seq1  CCAATAGAAGGAGAACCCTGACAAAAATCAAGAGCCCAACAGTAGGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGAAGGAGAACCCTGACAAAAATCAAGAGCCCAACAGTAGGTAGA  600

seq1  CAAAGTTCATGAATTTCATACCAAAGAGATCCAGGGGGAAGGGAAGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTCATGAATTTCATACCAAAGAGATCCAGGGGGAAGGGAAGCAAA  650

seq1  GATTAGGGTGCTGGGGCAAGAAGTCCTGAGAGGAACCAGAATTCTGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGGTGCTGGGGCAAGAAGTCCTGAGAGGAACCAGAATTCTGTAAA  700

seq1  ATGTACTTGCAA-TTCTGTGAGATTACAGAAGTTAGCATCCTCTCTGATA  749
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTGCAATTTCTGTGAGATTACAGAAGTTAGCATCCTCTCTGATA  750

seq1  TGTTAATAGGCCCTTCAGCCACTTATCCTGTGTGTCTTTGAGACAAAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATAGGCCCTTCAGCCACTTATCCTGTGTGTCTTTGAGACAAAACA  800

seq1  CTCTTGAGATGTTGAAACTCTCTGAGAGGCTGGGTGATAGGGAAATGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAGATGTTGAAACTCTCTGAGAGGCTGGGTGATAGGGAAATGCCT  850

seq1  TTCAGGCCAAGGCCATGCAACTTGCTTATACTTTTTTTTTGTTTGTTTGT  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCAGGCCAAGGCCATGCAACTTGCTTATACTTTTTTTTTG-TTGTTTGT  899

seq1  TTGTTTACTAATGAACACCTA-TATCTCAGCATGCCATTCTGCCATACAT  948
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  TTGTTTACTAATGAACACCTATTATCTCAGCATG-CATTCTGCCATACAT  948

seq1  TTTGTGCTCCAAGGGCTATCAGAAAAGCTCTCATCCTGATTCCTAA-TTA  997
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  TTTGTGCTCCAAGGGCTATCAGAAAAGCTCTCATCCTAATTCCTAATTTA  998

seq1  CTTCTTGGAGTTGGCTACACACTTAGTGTGCCATTTT-GTTTTGTTTTCT  1046
      |||| ||||||||||||| |||||| ||||||||||| ||||||||||||
seq2  CTTCCTGGAGTTGGCTACCCACTTA-TGTGCCATTTTGGTTTTGTTTTCT  1047

seq1  GACAGTGACTTAGGGCCAAGGTGTTTACAAGTTATTTCAG-ACTCTTATA  1095
      |||||||   || |||||||| |||||| ||||||||||| |||| ||  
seq2  GACAGTGGACTAAGGCCAAGGGGTTTAC-AGTTATTTCAGAACTCCTAAT  1096

seq1  GAG-ATGATGTCATCCTGTTTCTAGAGTTGAACTGAAAATGACCA-ATCA  1143
      ||| |||||||||||||| |||| ||| ||||||| |||||| || | ||
seq2  GAGAATGATGTCATCCTG-TTCTTGAG-TGAACTG-AAATGAACATACCA  1143

seq1  TCTGGGATAGAATA-CCAGGAGA-TCCTGAATCTTTAAGTGAGGGAGAGT  1191
      ||||| |||||| | || | ||| |||||||||||||||||  || ||||
seq2  TCTGGTATAGAAAACCCTGAAGATTCCTGAATCTTTAAGTGGAGGGGAGT  1193

seq1  CTG-GCTAGTTTTGCAGATTCACTTCTAATGGATAGCAC  1229
      |||  ||||||||||| |||||||||| |||||||||||
seq2  CTGCCCTAGTTTTGCA-ATTCACTTCT-ATGGATAGCAC  1230