BAC Information

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BAC

Clone NameB6Ng01-070L09
Chromosome7 (Build37)
Map Location 3,615,598 - 3,751,015
singlet/doubletdoublet
Overlap geneLeng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3
Downstream genePira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070L09.bB6Ng01-070L09.g
ACCDH888628DH888629
length1,035601
definitionDH888628|Mus musculus domesticus DNA, BAC clone: B6Ng01-070L09, 5' end.DH888629|Mus musculus domesticus DNA, BAC clone: B6Ng01-070L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,749,977 - 3,751,015)(3,615,598 - 3,616,203)
sequence
gaattctcattctcaaatgtagacctgagtaatgcaggtcaatatgaatg
ttcctacagcacccagtataaatcatcaggctacagtgacctcctggagc
tggtggtgacaggtgagagacacacaggatcctaggcctcaggttataac
tgtccagacttggctctgttaacaggaatgcccaccctcactgtgggaac
ctcagagccaaggagaacaatgaggcttggggatatttaactgactcctc
cttctctccaggacactactggacacccagcctttcagcccaggccagcc
ctgtggtaacttcaggagggtatgtcaccctccagtgtgagtcctggtac
aactataacaggttcattttgactgtagaaggacgacagaagctctcatg
gagacaagactcacagtataactactctacaaggaagtaccacgccctgt
tctctgtgggccctgtgacccccaaccagagatggatatgcagatgctac
agttatgacaggaatagaccatacgtgtggtcacctccaagtgaatccgt
ggagttcctggtctcaggtgaggaacctcagccttccatagaatgacatt
gaaatcatacaggtttcagagaccacttgatgtgtggtgtatgtggggat
ccagggctcttttgaactttgacacagagcacaggaatcagtgagtccaa
gactcacagtgacagccaagcccagagtgcccattagggagatgatgctt
tatgagggcttcggttactctggatcagctgtagcaccatccaccagagc
tcagagattgtggaaaacagagagaggaaggatgatggtagctagagagg
ttgaggacacccggaggacacgccctggagagcacagaatcaactaagca
gaatcttgagggctcacagagcctgcatgggtttaccctaggacctctgc
atacatgctgtactgctccaaatgataacatttttataaccgggtatagt
ggtcacgcctttaatccctgcactcaggaggcaga
gaattcaaggccagcatggtctacagagtgagttagttccaggactacac
agaaaaatcctgtcttgaaaagagggggtgggggtggggcaaatattgag
agcaagaagagataccatttctaacttggagtggagaatcgatgttttta
gacagtaaactgggctatcagagatagttcagagaagatccctgacctaa
aacagaaggcttcccagtctcaagtgatgcaaggaaaacccactcaggta
taggtataggtggcttgttcagccatagagcccctgccttgtgtgtagtt
ccaaattcagtccccaacacaagtatgtatatactcccaaacttgtaagg
taatcaaatattgctttctggacaaaggatctaaatccaaggtatggctc
caggtcaccactccaagtacaacctgaccccagatagggatggtctctga
ttcacaattctcccctttctgcagccttagtatctgggattaattacaag
cgtcacctttttgtttgtttgttttgttttgttttgttttttaagacagg
gtttttctgtgtagtcctggaactaactcactctgtagaccatgctggcc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_3749977_3751015
seq2: B6Ng01-070L09.b_44_1078 (reverse)

seq1  TCTGCCTCCTGAGTGCAGGGATTAAAGGCGTGGACCACTATACCCGGTTA  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTGCCTCCTGAGTGCAGGGATTAAAGGCGT-GACCACTATACCCGGTTA  49

seq1  TAAAAAATGTTATCATTTGGAGCAGTTACAGCATGTATGCAGAGGTCCTA  100
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  T-AAAAATGTTATCATTTGGAGCAG-TACAGCATGTATGCAGAGGTCCTA  97

seq1  GGGTAAACCCATGCAGGCTCTGTGAGCCCTCAAGATTCCTGCTTAGTTGA  150
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGGTAAACCCATGCAGGCTCTGTGAGCCCTCAAGATT-CTGCTTAGTTGA  146

seq1  TTCTGTGCTCTCCAGGGCGTGTCCTCCGGGTGTCCTCAACCTCTCTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGCTCTCCAGGGCGTGTCCTCCGGGTGTCCTCAACCTCTCTAGCT  196

seq1  ACCATCATCCTTCCTCTCTCTGTTTTCCACAATCTCTGAGCTCTGGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATCCTTCCTCTCTCTGTTTTCCACAATCTCTGAGCTCTGGTGGA  246

seq1  TGGTGCTACAGCTGATCCAGAGTAACCGAAGCCCTCATAAAGCATCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTACAGCTGATCCAGAGTAACCGAAGCCCTCATAAAGCATCATCT  296

seq1  CCCTAATGGGCACTCTGGGCTTGGCTGTCACTGTGAGTCTTGGACTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATGGGCACTCTGGGCTTGGCTGTCACTGTGAGTCTTGGACTCACT  346

seq1  GATTCCTGTGCTCTGTGTCAAAGTTCAAAAGAGCCCTGGATCCCCACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGTGCTCTGTGTCAAAGTTCAAAAGAGCCCTGGATCCCCACATA  396

seq1  CACCACACATCAAGTGGTCTCTGAAACCTGTATGATTTCAATGTCATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACATCAAGTGGTCTCTGAAACCTGTATGATTTCAATGTCATTCT  446

seq1  ATGGAAGGCTGAGGTTCCTCACCTGAGACCAGGAACTCCACGGATTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGGCTGAGGTTCCTCACCTGAGACCAGGAACTCCACGGATTCACT  496

seq1  TGGAGGTGACCACACGTATGGTCTATTCCTGTCATAACTGTAGCATCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTGACCACACGTATGGTCTATTCCTGTCATAACTGTAGCATCTGC  546

seq1  ATATCCATCTCTGGTTGGGGGTCACAGGGCCCACAGAGAACAGGGCGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCATCTCTGGTTGGGGGTCACAGGGCCCACAGAGAACAGGGCGTGG  596

seq1  TACTTCCTTGTAGAGTAGTTATACTGTGAGTCTTGTCTCCATGAGAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCTTGTAGAGTAGTTATACTGTGAGTCTTGTCTCCATGAGAGCTT  646

seq1  CTGTCGTCCTTCTACAGTCAAAATGAACCTGTTATAGTTGTACCAGGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGTCCTTCTACAGTCAAAATGAACCTGTTATAGTTGTACCAGGACT  696

seq1  CACACTGGAGGGTGACATACCCTCCTGAAGTTACCACAGGGCTGGCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGGAGGGTGACATACCCTCCTGAAGTTACCACAGGGCTGGCCTGG  746

seq1  GCTGAAAGGCTGGGTGTCCAGTAGTGTCCTGGAGAGAAGGAGGAGTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAGGCTGGGTGTCCAGTAGTGTCCTGGAGAGAAGGAGGAGTCAGT  796

seq1  TAAATATCCCCAAGCCTCATTGTTCTCCTTGGCTCTGAGGTTCCCACAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCCCCAAGCCTCATTGTTCTCCTTGGCTCTGAGGTTCCCACAGT  846

seq1  GAGGGTGGGCATTCCTGTTAACAGAGCCAAGTCTGGACAGTTATAACCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGGCATTCCTGTTAACAGAGCCAAGTCTGGACAGTTATAACCTG  896

seq1  AGGCCTAGGATCCTGTGTGTCTCTCACCTGTCACCACCAGCTCCAGGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTAGGATCCTGTGTGTCTCTCACCTGTCACCACCAGCTCCAGGAGG  946

seq1  TCACTGTAGCCTGATGATTTATACTGGGTGCTGTAGGAACATTCATATTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTAGCCTGATGATTTATACTGGGTGCTGTAGGAACATTCATATTG  996

seq1  ACCTGCATTACTCAGGTCTACATTTGAGAATGAGAATTC  1039
      |||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCATTACTCAGGTCTACATTTGAGAATGAGAATTC  1035

seq1: chr7_3615598_3616203
seq2: B6Ng01-070L09.g_70_670

seq1  GAATTCAAGGCCAGCATGGTCTACAGAGTGAGTTAGTTCCAGGACTACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCATGGTCTACAGAGTGAGTTAGTTCCAGGACTACAC  50

seq1  AGAAAAATCCTGTCTTGAAAAGAGGGGGTGGGGGTGGGGCAAATATTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATCCTGTCTTGAAAAGAGGGGGTGGGGGTGGGGCAAATATTGAG  100

seq1  AGCAAGAAGAGATACCATTTCTAACTTGGAGTGGAGAATCGATGTTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAAGAGATACCATTTCTAACTTGGAGTGGAGAATCGATGTTTTTA  150

seq1  GACAGTAAACTGGGCTATCAGAGATAGTTCAGAGAAGATCCCTGACCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAAACTGGGCTATCAGAGATAGTTCAGAGAAGATCCCTGACCTAA  200

seq1  AACAGAAGGCTTCCCAGTCTCAAGTGATGCAAGGAAAACCCACTCAGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGGCTTCCCAGTCTCAAGTGATGCAAGGAAAACCCACTCAGGTA  250

seq1  TAGGTATAGGTGGCTTGTTCAGCCATAGAGCCCCTGCCTTGTGTGTAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATAGGTGGCTTGTTCAGCCATAGAGCCCCTGCCTTGTGTGTAGTT  300

seq1  CCAAATTCAGTCCCCAACACAAGTATGTATATACTCCCAAACTTGTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTCAGTCCCCAACACAAGTATGTATATACTCCCAAACTTGTAAGG  350

seq1  TAATCAAATATTGCTTTCTGGACAAAGGATCTAAATCCAAGGTATGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAATATTGCTTTCTGGACAAAGGATCTAAATCCAAGGTATGGCTC  400

seq1  CAGGTCACCACTCCAAGTACAACCTGACCCCAGATAGGGATGGTCTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCACCACTCCAAGTACAACCTGACCCCAGATAGGGATGGTCTCTGA  450

seq1  TTCACAATTCTCCCCTTTCTGCAGCCTTAGTATCTGGGATTAATTACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAATTCTCCCCTTTCTGCAGCCTTAGTATCTGGGATTAATTACAAG  500

seq1  CGTCACCTTTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTTTAAGACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCACCTTTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTTTAAGACAGG  550

seq1  GTTTTTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGC  600
      |||||||||||||| |||||   |     |||||||| ||||||||| ||
seq2  GTTTTTCTGTGTAGTCCTGGAACT-----AACTCACTCTGTAGACCATGC  595

seq1  TGGCCT  606
      ||||||
seq2  TGGCCT  601