BAC Information

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BAC

Clone NameB6Ng01-071L11
Chromosome7 (Build37)7 (Build37)
Map Location 11,732,961 - 11,733,61897,649,571 - 97,649,840
singlet/doubletsingletsinglet
Overlap geneLOC100042293
Upstream geneVmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997
Downstream geneZscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071L11.bB6Ng01-071L11.g
ACCDH889338DH889339
length9591,100
definitionDH889338|Mus musculus domesticus DNA, BAC clone: B6Ng01-071L11, 5' end.DH889339|Mus musculus domesticus DNA, BAC clone: B6Ng01-071L11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,732,961 - 11,733,618)(97,649,571 - 97,649,840)
sequence
gaattcaggcagaacaattgagcatagataaattttttgcctcaggccag
ccttttcttttcttttttttcttattattttcatttttattaacaacagg
gaggagatgtagtctcccctctcccagcctgaaacctgcttgctcagggg
tggatcttcccgctcaatcgttctgccatgcccactgctggaacctgctg
ctttgctgtttggagccatacacgtggtcaccctgctactggactcctag
attatttgacgggaattgggcccccttcccctgcttcataactgtgagca
gaactgtaaaattgagctttgatcagaatgcctgtcttaactgcatttct
ttctctcatcgcctagcccctcttctcttacaggtttccaaaatgccttt
ccaggctagaacccaggctgtgatctgctggccagacacaacagcagagg
acaagggcaaccccatagaaagaccagcagtctcaactaaactctgtaat
ctctcagacactgagccaccaaacaggcagcttatacctgagctgttctg
aggttctggacacatatacatcagagtactgactggtctggtctcggtga
gagaagaggagcctacccgttgagagatttgaggccccagggagttagaa
ggcattgcaggaggtgatggagatatcctcttgtagacaatggaggagga
atgggataaggcaatgagagggcactgactggactgtaaaatataaaagt
aataaaaaaaaatctaagaataaaattttcaatgaaatatatattttaag
ttcaaaatggctcagtttctaatgcaaaatgaataagttattatgaggag
ataaattcatatataccaatattaatgtaaaattcccaacacataatatt
atatatatatgtatgtatgtatatatatatatatatatatatatatatat
atatatata
gaattctcagctaaaactcttgactctggcctttttgtggttgggagatt
ttagtgataattgtatttctaaaagggtgataggtatatttaaattattt
atcctatcttcatttaattttgctaagtggtctcttacaagaaaattgtc
cattttttttagaatgtccaattttctgaagtacatgtttttgatgtaag
acttaatgattcttttcttttcctctgtgtctcttattatggctgtcttt
ctattctgtttttgttattttaatattctctttgtcatttagctagtttg
gataaagttttgtcaacctttttgttttctaaaataaccaactatttgtt
tccttgattctttatattgttctctttccatttttattagtttcatcaca
acttattatttcttgccttctactactctagggtatgtttgcttcttttt
gttatcaagctttatgtgcattgttaaatccatggtatgagatgcttcta
atttccttacaaaagctcttagtgtctatgatccttcctccttatatcac
ttcctttgtgttccttaagtttggggttgctttgcaataattattgttga
attatagaaagttttttaatttctttctttatcacttccttgatccattg
ttcctttagcagagagttcttcagtttctatgcatttttaggctttctgt
ttttctggtctaatatcaaacaagaggttagtccattttcttttatctct
tgatatctgctttgtgtcagagtaaatggtcagttttagaaacggaactg
tgaggtactaaaaaaaaggtatatttctgtacctttgaatatattgtttt
ttctttcttttttcttttattttattagacatttctttatttacatttca
aattctatcctgaaagttccctatagcctacccatgccctgctccctatt
tacccactctgctttttggccctggcattccctctactggggcatataag
ttacagacaggggctctcttccaagatgcgactagcatctctgctacata
tgcagctagagaccgactctgaaagtactgtagttcatattgttgtccac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11732961_11733618
seq2: B6Ng01-071L11.b_348_1004

seq1  ACTGTAAAATTGAGCTTTGATCAGAATGCCTGTCTTAACTGCATTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAAATTGAGCTTTGATCAGAATGCCTGTCTTAACTGCATTTCTTT  50

seq1  CTCTCATCGCCTAGCCCCTCTTCTCTTACAGGTTTCCAAAATGCCTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATCGCCTAGCCCCTCTTCTCTTACAGGTTTCCAAAATGCCTTTCC  100

seq1  AGGCTAGAACCCAGGCTGTGATCTGCTGGCCAGACACAACAGCAGAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGAACCCAGGCTGTGATCTGCTGGCCAGACACAACAGCAGAGGAC  150

seq1  AAGGGCAACCCCATAGAAAGACCAGCAGTCTCAACTAAACTCTGTAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAACCCCATAGAAAGACCAGCAGTCTCAACTAAACTCTGTAATCT  200

seq1  CTCAGACACTGAGCCACCAAACAGGCAGCTTATACCTGAGCTGTTCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACACTGAGCCACCAAACAGGCAGCTTATACCTGAGCTGTTCTGAG  250

seq1  GTTCTGGACACATATACATCAGAGTACTGACTGGTCTGGTCTCGGTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGACACATATACATCAGAGTACTGACTGGTCTGGTCTCGGTGAGA  300

seq1  GAAGAGGAGCCTACCCGTTGAGAGATTTGAGGCCCCAGGGAGTTAGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAGCCTACCCGTTGAGAGATTTGAGGCCCCAGGGAGTTAGAAGG  350

seq1  CATTGCAGGAGGTGATGGAGATATCCTCTTGTAGACAATGGAGGAGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAGGAGGTGATGGAGATATCCTCTTGTAGACAATGGAGGAGGAAT  400

seq1  GGGATAAGGCAATGAGAGGGCACTGACTGGACTGTAAAATATAAAAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAGGCAATGAGAGGGCACTGACTGGACTGTAAAATATAAAAGTAA  450

seq1  TAAAAAAAAATCTAAGAATAAAATTTTCAATGAAATATATATTTTAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAATCTAAGAATAAAATTTTCAATGAAATATATATTTTAAGTT  500

seq1  CAAAATGGCTCAGGTTTCTAATGCAAAATGAATAAGTTATTATGAGGAGA  550
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGCTCA-GTTTCTAATGCAAAATGAATAAGTTATTATGAGGAGA  549

seq1  TAAATTCATATATACCAATATTAATGTAAAATTCCCAACACATAATATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCATATATACCAATATTAATGTAAAATTCCCAACACATAATATTA  599

seq1  TATATATATGTATGTATGTATATATATATATATATATATATATATATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATGTATGTATGTATATATATATATATATATATATATATATATA  649

seq1  TATATATA  658
      ||||||||
seq2  TATATATA  657

seq1: chr7_97649571_97649840
seq2: B6Ng01-071L11.g_917_1164

seq1  CTTTCTTTTTTCTTTTCTCTTTATTAGATATTTTCTTTATTTACATTTCA  50
      |||||||||||||||| | ||||||||| | |||||||||||||||||||
seq2  CTTTCTTTTTTCTTTTAT-TTTATTAGACA-TTTCTTTATTTACATTTCA  48

seq1  AATGCTACCCTGAAAGTTCCCTATACCCTCCCCCTGCCCTGCTCCCCTAC  100
      ||| ||| ||||||||||||||||| ||| ||| ||||||||| ||||| 
seq2  AATTCTATCCTGAAAGTTCCCTATAGCCTACCCATGCCCTGCT-CCCTAT  97

seq1  CCACCCATTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGGGGCATAT  150
        ||||| | |  ||| ||||||||||| || |||| |||||||||||||
seq2  TTACCCACT-CTGCTTTTTGGCCCTGGCATT-CCCTCTACTGGGGCATAT  145

seq1  AAAATTTGCAATATCAAGGGACCTCTCTTTCCACTGATGGCTGACTAGGC  200
        || || ||    || |||  ||||||| | |  ||||   ||||||  
seq2  --AAGTTACA--GACAGGGG--CTCTCTTCCAA--GATG--CGACTAG--  183

seq1  CATCTTTTGATACATATGCAGCTAGAGACGAGAGCTCCG-GGGTACTGGT  249
      |||| | || |||||||||||||||||||  || ||| |   ||||||  
seq2  CATC-TCTGCTACATATGCAGCTAGAGAC-CGA-CTCTGAAAGTACTG--  228

seq1  TAGTTCATATTGTTGTTCCAC  270
      ||||||||||||||| |||||
seq2  TAGTTCATATTGTTG-TCCAC  248