BAC Information

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BAC

Clone NameB6Ng01-071M10
Chromosome7 (Build37)
Map Location 48,168,270 - 48,260,341
singlet/doubletdoublet
Overlap gene2900093B09Rik, 4930433I11Rik
Upstream geneEG628161, LOC100039094
Downstream geneEG233164, LOC668555, EG627987, LOC100039269, LOC545955, EG628304, LOC668561, EG434172, LOC100039221, LOC668565, AI987944, EG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071M10.bB6Ng01-071M10.g
ACCDH889378DH889379
length1,2031,157
definitionDH889378|Mus musculus domesticus DNA, BAC clone: B6Ng01-071M10, 5' end.DH889379|Mus musculus domesticus DNA, BAC clone: B6Ng01-071M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,168,270 - 48,169,496)(48,259,169 - 48,260,341)
sequence
gaattcattatccttctgcctcgtcctccttggtgctgaggaaatagatg
tgagccaccgtgtttggctttgactggtaatttttggattgaagaatatt
tacaagacatagtgttggtttgtgcctcgaatcccagcactggggaggca
aagggatatgggattaaaggccagaggatgctacacagtgaaactcaggc
aagggcaggaaagtgagagaagaagggatcagttctgagagattaaggga
tccttgtaaggaacacaaggagtgcctcggggaccttataggaagattga
gaaggaacaagaagacacacccagaacactctagtaacacgtccttctct
aatcaaaacaactctgcttttctctgctttctatgtcagagctgacatat
ttgaaaattactgaacttgacatttatgacatcagttacaaatggagatc
ttagaggtgtactgtgatcacattccactctggaagcactgaacctgtga
caactgtcttgacatttgcttgtggtcagttggatgtagaagaagtactt
ggaatggggctaggagatctacacaaggccactgtgagctatgatgagat
tgtgtgggtagaggactgagggctccatcagacatctggtcattgctgga
tacagggtgccactgctggtgaagaggagctattttatggcttggaatta
cagattagccgtgaatggtgtatgctggcagtgttgtatagattaaaact
ggtctcatgccatgatatgttctggtaattactgcaaataagacaagaag
cataacacttccaaatgctagggataaaggagacaccaaacccatagact
gactctctgagatttcttcttatcaaggaaaaacaaactgtttttaagtt
gacaggataaagaaagagagtagtgacttccaggaagaaggatacaatgt
gcagatgtccttttgccaggaaattcaaaggccttaaaagggttatttgg
ctctgcaagaaaagtgagaagtcagagttcactggttaaataagatcact
gtacgatttcgagtggtttgttttttgtttttgttcctctgaggcatggg
gtcagagaaaacagagtgagagcagatctttgggaatgtggattcagcaa
gtgcgggaaacgaatgctatgcagcttcggaacgtccaagagagaatgtg
tag
gaattcatgccacaaatgatggctcttctaaaattctgctacatttcccc
cttttgtttaaggtatacttaattatgttgaggagattattgtttaatcg
gtcagtttccttacctggctctgcacttggaatgctagtatagtttggac
ttgaatttattttggattctacacaatttaatattcttttagaaatgact
ttccattggcattgttttacaggatgggcattataagtaaacaccatgaa
agcaaatttctctgtatcttgttcatttaaaaggatagtgaaaaaataat
cacgaatcaataaccataataggcaaatatttaggtaataaagtaaatgt
atcccataatataaagattaaattaattgaattactttgtttacagctct
taaatcagttgacaatcttgatattccagatttcttttttattataaatt
tagaagaattgagagaactagtagtttcctcaaaatgattagcttataac
tgttcttttattagctgttcaaacatatgtaatttcatgttagtcaagag
tcattggtctacccaaacaggcttaaaagtcaacgattttaaaggtaggg
cagttggtatgtgaatcatggctcctactctaaatttgggaagccaattc
ctatttttttctgctgttggaaaaactgtatagcctgtgattttggtgat
aatttttatttttaaggaatgtatcccatttttttataattttatgagtt
gtttctgaaattgaaggtgttgtaatttaagcctcagattccacatgcaa
aagatctgatgtggaagggtcattcagcggatgggatattcagaggctgt
ctttgagtatgggtggaaggaaaagagaacaagaaaaagaggcactggct
ttttataaggtgagtagtacatgtgattgggaggatacatgactcatggt
gacagtgaaaatgtgtcacatcttggcactagtgatatgtatcctgctgt
cactaggtccctgagagcaggctggtagaaagcctgctaacatccctatt
tttgtttattatttacacatgaggacctgagagcgtaatggtaaggcaga
tggagtgatgggctcttaattgcttctgcttcatcttcagggatattgaa
tcctcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_48168270_48169496
seq2: B6Ng01-071M10.b_42_1244

seq1  GAATTCATTATCCTTCTGCCTCGTCCTCCTTGGTGCTGAGGAAATAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATCCTTCTGCCTCGTCCTCCTTGGTGCTGAGGAAATAGATG  50

seq1  TGAGCCACCGTGTTTGGCTTTGACTGGTAATTTTTGGATTGAAGAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACCGTGTTTGGCTTTGACTGGTAATTTTTGGATTGAAGAATATT  100

seq1  TACAAGACATAGTGTTGGTTTGTGCCTCGAATCCCAGCACTGGGGAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGACATAGTGTTGGTTTGTGCCTCGAATCCCAGCACTGGGGAGGCA  150

seq1  AAGGGATATGGGATTAAAGGCCAGAGGATGCTACACAGTGAAACTCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATATGGGATTAAAGGCCAGAGGATGCTACACAGTGAAACTCAGGC  200

seq1  AAGGGCAGGAAAGTGAGAGAAGAAGGGATCAGTTCTGAGAGATTAAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAGGAAAGTGAGAGAAGAAGGGATCAGTTCTGAGAGATTAAGGGA  250

seq1  TCCTTGTAAGGAACACAAGGAGTGCCTCGGGGACCTTATAGGAAGATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTAAGGAACACAAGGAGTGCCTCGGGGACCTTATAGGAAGATTGA  300

seq1  GAAGGAACAAGAAGACACACCCAGAACACTCTAGTAACACGTCCTTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAACAAGAAGACACACCCAGAACACTCTAGTAACACGTCCTTCTCT  350

seq1  AATCAAAACAACTCTGCTTTTCTCTGCTTTCTATGTCAGAGCTGACATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAACAACTCTGCTTTTCTCTGCTTTCTATGTCAGAGCTGACATAT  400

seq1  TTGAAAATTACTGAACTTGACATTTATGACATCAGTTACAAATGGAGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTACTGAACTTGACATTTATGACATCAGTTACAAATGGAGATC  450

seq1  TTAGAGGTGTACTGTGATCACATTCCACTCTGGAAGCACTGAACCTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGTGTACTGTGATCACATTCCACTCTGGAAGCACTGAACCTGTGA  500

seq1  CAACTGTCTTGACATTTGCTTGTGGTCAGTTGGATGTAGAAGAAGTACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTCTTGACATTTGCTTGTGGTCAGTTGGATGTAGAAGAAGTACTT  550

seq1  GGAATGGGGCTAGGAGATCTACACAAGGCCACTGTGAGCTATGATGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGGGCTAGGAGATCTACACAAGGCCACTGTGAGCTATGATGAGAT  600

seq1  TGTGTGGGTAGAGGACTGAGGGCTCCATCAGACATCTGGTCATTGCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGTAGAGGACTGAGGGCTCCATCAGACATCTGGTCATTGCTGGA  650

seq1  TACAGGGTGCCACTGCTGGTGAAGAGGAGCTATTTTATGGCTTGGAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGTGCCACTGCTGGTGAAGAGGAGCTATTTTATGGCTTGGAATTA  700

seq1  CAGATTAGCCGTGAATGGTGTATGCTGGCAGTGTTGTATAGATTAAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTAGCCGTGAATGGTGTATGCTGGCAGTGTTGTATAGATTAAAACT  750

seq1  GGTCTCATGCCATGATATGTTCTGGTAATTACTGCAAATAAGACAAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCATGCCATGATATGTTCTGGTAATTACTGCAAATAAGACAAGAAG  800

seq1  CATAACACTTCCAAATGCTAGGGATAAAGGAGACACCAAACCCATAGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACACTTCCAAATGCTAGGGATAAAGGAGACACCAAACCCATAGACT  850

seq1  GACTCTCTGAGATTTCTTCTTATCAAGGAAAAAACAAACTGTTTTTAAGT  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GACTCTCTGAGATTTCTTCTTATCAAGG-AAAAACAAACTGTTTTTAAGT  899

seq1  TGACAGGATAAAGAAAGAGAGTAGTGACTTCCAGGAAGAAGGATACAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGATAAAGAAAGAGAGTAGTGACTTCCAGGAAGAAGGATACAATG  949

seq1  TGCAGATGTCCTTTTGCCAGGAAATTCAAAGGCCTTAAAAAGGGTTATTT  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCAGATGTCCTTTTGCCAGGAAATTCAAAGGCCTT-AAAAGGGTTATTT  998

seq1  GGCTCTGCAAGAAAAGTGAGAAGTCAGAGTTCACTGGTTAAATAAGATCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGCAAGAAAAGTGAGAAGTCAGAGTTCACTGGTTAAATAAGATCA  1048

seq1  ACCTGTACGATTTCAGAGTTGGTTTG-TTTTTGTTTTTGTTTCCTCTGAA  1099
        |||||||||||| ||| ||||||| |||||||||||| ||||||||| 
seq2  --CTGTACGATTTC-GAG-TGGTTTGTTTTTTGTTTTTG-TTCCTCTGA-  1092

seq1  GGGCATGGGGTCAGAGAAAACAGAGTGGAAGAAGGCAGGATCCTTTGGAG  1149
       ||||||||||||||||||||||||||  |||  ||| ||| |||||| |
seq2  -GGCATGGGGTCAGAGAAAACAGAGTG--AGA--GCA-GAT-CTTTGG-G  1134

seq1  ATGGTGGATCCAGCCAGTGCGGAGACAGATAGGCTATGCAGCTCAGAGAA  1199
      |  |||||| |||| ||||||| || |   | |||||||||||  | |||
seq2  AATGTGGATTCAGCAAGTGCGG-GAAACGAATGCTATGCAGCTTCG-GAA  1182

seq1  AACAGTGCCAAGAGAAGACAGTGTGTAG  1227
          || |||||   ||| | |||||||
seq2  ---CGT-CCAAG---AGAGAATGTGTAG  1203

seq1: chr7_48259169_48260341
seq2: B6Ng01-071M10.g_67_1223 (reverse)

seq1  GTGAGGATCAACATTTCCCTGAAGATGACAGCAGGAAGCAGTATAAAGAG  50
      ||||||||  | || ||||||||||||| |||| ||||||  || |||||
seq2  GTGAGGATTCA-ATATCCCTGAAGATGA-AGCA-GAAGCA--ATTAAGAG  45

seq1  CACATCACTCTCATTCCCTGCCTTAACATCACCGCTCTCAGGTTCCTCAT  100
      | |||||||| |||   |||||||| ||| | |||||||||| |||||||
seq2  CCCATCACTC-CAT---CTGCCTTACCATTA-CGCTCTCAGG-TCCTCAT  89

seq1  GTTGTAAAATAATAAACAAAAATAGGGATGTTAGCAGGCTTTTCTACCAG  150
      | ||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  G-TGT-AAATAATAAACAAAAATAGGGATGTTAGCAGGC-TTTCTACCAG  136

seq1  CCTGCTCTCAGGGACCTAGTGACAGCAGGATACATTATCACTAGTTGCCA  200
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  CCTGCTCTCAGGGACCTAGTGACAGCAGGATACA-TATCACTAG-TGCCA  184

seq1  AGATGTGACACATTTTCACTGTCACCATGAGTCATGTATCCTCCCAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGACACATTTTCACTGTCACCATGAGTCATGTATCCTCCCAATCA  234

seq1  CATGTACTACTCACCTTATAAAAAGCCAGTGCCTCTTTTTCTTGTTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACTACTCACCTTATAAAAAGCCAGTGCCTCTTTTTCTTGTTCTCT  284

seq1  TTTCCTTCCACCCATACTCAAAGACAGCCTCTGAATATCCCATCCGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCCACCCATACTCAAAGACAGCCTCTGAATATCCCATCCGCTGA  334

seq1  ATGACCCTTCCACATCAGATCTTTTGCATGTGGAATCTGAGGCTTAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCTTCCACATCAGATCTTTTGCATGTGGAATCTGAGGCTTAAATT  384

seq1  ACAACACCTTCAATTTCAGAAACAACTCATAAAATTATAAAAAAATGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACCTTCAATTTCAGAAACAACTCATAAAATTATAAAAAAATGGGA  434

seq1  TACATTCCTTAAAAATAAAAATTATCACCAAAATCACAGGCTATACAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCCTTAAAAATAAAAATTATCACCAAAATCACAGGCTATACAGTT  484

seq1  TTTCCAACAGCAGAAAAAAATAGGAATTGGCTTCCCAAATTTAGAGTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACAGCAGAAAAAAATAGGAATTGGCTTCCCAAATTTAGAGTAGG  534

seq1  AGCCATGATTCACATACCAACTGCCCTACCTTTAAAATCGTTGACTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGATTCACATACCAACTGCCCTACCTTTAAAATCGTTGACTTTTA  584

seq1  AGCCTGTTTGGGTAGACCAATGACTCTTGACTAACATGAAATTACATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTTTGGGTAGACCAATGACTCTTGACTAACATGAAATTACATATG  634

seq1  TTTGAACAGCTAATAAAAGAACAGTTATAAGCTAATCATTTTGAGGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACAGCTAATAAAAGAACAGTTATAAGCTAATCATTTTGAGGAAAC  684

seq1  TACTAGTTCTCTCAATTCTTCTAAATTTATAATAAAAAAGAAATCTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTTCTCTCAATTCTTCTAAATTTATAATAAAAAAGAAATCTGGAA  734

seq1  TATCAAGATTGTCAACTGATTTAAGAGCTGTAAACAAAGTAATTCAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGATTGTCAACTGATTTAAGAGCTGTAAACAAAGTAATTCAATTA  784

seq1  ATTTAATCTTTATATTATGGGATACATTTACTTTATTACCTAAATATTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATCTTTATATTATGGGATACATTTACTTTATTACCTAAATATTTG  834

seq1  CCTATTATGGTTATTGATTCGTGATTATTTTTTCACTATCCTTTTAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTATGGTTATTGATTCGTGATTATTTTTTCACTATCCTTTTAAATG  884

seq1  AACAAGATACAGAGAAATTTGCTTTCATGGTGTTTACTTATAATGCCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATACAGAGAAATTTGCTTTCATGGTGTTTACTTATAATGCCCAT  934

seq1  CCTGTAAAACAATGCCAATGGAAAGTCATTTCTAAAAGAATATTAAATTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAAACAATGCCAATGGAAAGTCATTTCTAAAAGAATATTAAATTG  984

seq1  TGTAGAATCCAAAATAAATTCAAGTCCAAACTATACTAGCATTCCAAGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAATCCAAAATAAATTCAAGTCCAAACTATACTAGCATTCCAAGTG  1034

seq1  CAGAGCCAGGTAAGGAAACTGACCGATTAAACAATAATCTCCTCAACATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCAGGTAAGGAAACTGACCGATTAAACAATAATCTCCTCAACATA  1084

seq1  ATTAAGTATACCTTAAACAAAAGGGGGAAATGTAGCAGAATTTTAGAAGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTATACCTTAAACAAAAGGGGGAAATGTAGCAGAATTTTAGAAGA  1134

seq1  GCCATCATTTGTGGCATGAATTC  1173
      |||||||||||||||||||||||
seq2  GCCATCATTTGTGGCATGAATTC  1157