BAC Information

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BAC

Clone NameB6Ng01-072C08
Chromosome7 (Build37)
Map Location 133,786,434 - 133,925,500
singlet/doubletdoublet
Overlap geneCcdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6
Upstream geneGtf3c1, D430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1
Downstream genePpp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072C08.bB6Ng01-072C08.g
ACCDH889641DH889642
length394862
definitionDH889641|Mus musculus domesticus DNA, BAC clone: B6Ng01-072C08, 5' end.DH889642|Mus musculus domesticus DNA, BAC clone: B6Ng01-072C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,786,434 - 133,786,833)(133,924,645 - 133,925,500)
sequence
caggccagtcttactaatcaaaaccatataatgggatcagcaagattgag
tagaaggtagaacatttgttaccaagactgctgacctaaatttgatctga
atacccacaaggtagtgaggttctgctcccacgggttctcctgtgatctc
agcacagctccatcgctctggctgatgaatgccacacaggcatcactgtg
actgacgaagagggaagggaaacttcggtggggatatatgaaaggagaat
aaaaattctttttttttttttttaaagatttattttattttattatatgt
gtgtacactgtagctgtctttaacgttcctgaagagggtgtcagatcttg
ttactgatggttgtgagccaccatgtgttttgctgggatttgaa
gaattctcttttcaaaaagctgacttggccgtccctcacctgccagcctt
ggtgatgatcatctctgtccccacagcgctgaattccttccacagttcct
ggttctccaagctcaggctgaccccaggaagcgagtgaagggcctctggg
ggtggcggtgctgtctcggggcccagagcagatgggagaaggggcaaagg
agcggctgcagccagagtgtggggagctgcctcgatcccagagaggaagc
aatccagtttagaagtatccaaatctggagatgtgggaagaatgaggatc
caggggagggccacatattcccagtttcctgccccttacccagagccaat
ccaaccgctcaccagggtagcggtaaccctctgtcagggcaggtgggaag
gtggagtctgccccaggctgggggtgtcccagacggtagccagtccccag
ggaggggtacaactctcgtggatggtacatgttgtagtttcttctggcct
tgtgtcccgttgctagaatccggggtctaagggatgccccctttatagct
cacagcacagccccttccaaaccagagatcacagcccctcccctccttgg
ggccctggaggtgggctggaatggagaccccctggggcctagaaggggtc
caagaggaggccgggatacctgggtacccttcccctctccctcgcagctt
tcactagtcccgaccccctaccccctcattacataataaattccctcggt
ctgattgatcccttggctaagacaggggacacaattttggcacttccggc
cagctggttcccgttcccacggtgggggccatatcgctagggggtagggg
tgggactggatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_133786434_133786833
seq2: B6Ng01-072C08.b_41_440

seq1  GAATTCCAGGCCAGTCTTACTAATCAAAACCAGATAATGGGATCAGCAAG  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATTCCAGGCCAGTCTTACTAATCAAAACCATATAATGGGATCAGCAAG  50

seq1  ATTGAGTAGAAGGTAGAACATTTGTTACCAAGACTGCTGACCTAAATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTAGAAGGTAGAACATTTGTTACCAAGACTGCTGACCTAAATTTG  100

seq1  ATCTGAATACCCACAAGGTAGTGAGGTTCTGCTCCCACGGGTTCTCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATACCCACAAGGTAGTGAGGTTCTGCTCCCACGGGTTCTCCTGT  150

seq1  GATCTCAGCACAGCTCCATCGCTCTGGCTGATGAATGCCACACAGGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAGCACAGCTCCATCGCTCTGGCTGATGAATGCCACACAGGCATC  200

seq1  ACTGTGACTGACGAAGAGGGAAGGGAAACTTCGGTGGGGATATATGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGACTGACGAAGAGGGAAGGGAAACTTCGGTGGGGATATATGAAAG  250

seq1  GAGAATAAAAATTCTTTTTTTTTTTTTTTAAAGATTTATTTTATTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAAAAATTCTTTTTTTTTTTTTTTAAAGATTTATTTTATTTTATT  300

seq1  ATATGTGTGTACACTGTAGCTGTCTTCAGACACTCCGGAAGAGGGTGTCA  350
      |||||||||||||||||||||||||| | ||  ||| |||||||||||||
seq2  ATATGTGTGTACACTGTAGCTGTCTTTA-ACGTTCCTGAAGAGGGTGTCA  349

seq1  GATCTTGTTACGGATGGTTGTGAGCCACCATGTG-GTTGCTGGGATTTGA  399
      ||||||||||| ||||||||||||||||||||||  ||||||||||||||
seq2  GATCTTGTTACTGATGGTTGTGAGCCACCATGTGTTTTGCTGGGATTTGA  399

seq1  A  400
      |
seq2  A  400

seq1: chr7_133924645_133925500
seq2: B6Ng01-072C08.g_69_929 (reverse)

seq1  ATCCAGATCCCACCCCTGCCCCCTAGCCGGTCT-GCCCCCACCGTGGGAA  49
      |||||| |||||||||| |||||||| || | | ||||||||||||||||
seq2  ATCCAG-TCCCACCCCTACCCCCTAG-CGATATGGCCCCCACCGTGGGAA  48

seq1  CGGAGACCAGCTGGCCGGAAGCGCC-AAACTGCGT-CCCTGTCTTAGCCC  97
      |||  |||||||||||||||| ||| ||| || || ||||||||||| ||
seq2  CGGGAACCAGCTGGCCGGAAGTGCCAAAATTGTGTCCCCTGTCTTAG-CC  97

seq1  TAGGGATCAATCAGACCGA-GGAGTTAATTATGTAATGAGGGGGTAGGGG  146
       |||||||||||||||||| ||| || |||||||||||||||||||||||
seq2  AAGGGATCAATCAGACCGAGGGAATTTATTATGTAATGAGGGGGTAGGGG  147

seq1  GTCGGGACTAGTG-AAGCTGCGAGGGAGAGGGG-AGGGTACCCAGGTAT-  193
      ||||||||||||| ||||||||||||||||||| ||||||||||||||| 
seq2  GTCGGGACTAGTGAAAGCTGCGAGGGAGAGGGGAAGGGTACCCAGGTATC  197

seq1  CCGGCCTCCTCTTGGACCCCTTCTAGGCCCCA-GGGGTCTCCATTCCAGC  242
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCGGCCTCCTCTTGGACCCCTTCTAGGCCCCAGGGGGTCTCCATTCCAGC  247

seq1  CCACCTCCAGGGCCCCAAGGAGGGGAGGGGCTGTGATCTCTGGTTTGGAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCCAGGGCCCCAAGGAGGGGAGGGGCTGTGATCTCTGGTTTGGAA  297

seq1  GGGGCTGTGCTGTGAGCTATAAAGGGGGCATCCCTTAGACCCCGGATTCT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGTGCTGTGAGCTATAAAGGGGGCATCCCTTAGACCCCGGATTCT  347

seq1  AGCAACGGGACACAAGGCCAGAAGAAACTACAACATGTACCATCCACGAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACGGGACACAAGGCCAGAAGAAACTACAACATGTACCATCCACGAG  397

seq1  AGTTGTACCCCTCCCTGGGGACTGGCTACCGTCTGGGACACCCCCAGCCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTACCCCTCCCTGGGGACTGGCTACCGTCTGGGACACCCCCAGCCT  447

seq1  GGGGCAGACTCCACCTTCCCACCTGCCCTGACAGAGGGTTACCGCTACCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGACTCCACCTTCCCACCTGCCCTGACAGAGGGTTACCGCTACCC  497

seq1  TGGTGAGCGGTTGGATTGGCTCTGGGTAAGGGGCAGGAAACTGGGAATAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGCGGTTGGATTGGCTCTGGGTAAGGGGCAGGAAACTGGGAATAT  547

seq1  GTGGCCCTCCCCTGGATCCTCATTCTTCCCACATCTCCAGATTTGGATAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCTCCCCTGGATCCTCATTCTTCCCACATCTCCAGATTTGGATAC  597

seq1  TTCTAAACTGGATTGCTTCCTCTCTGGGATCGAGGCAGCTCCCCACACTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAACTGGATTGCTTCCTCTCTGGGATCGAGGCAGCTCCCCACACTC  647

seq1  TGGCTGCAGCCGCTCCTTTGCCCCTTCTCCCATCTGCTCTGGGCCCCGAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCAGCCGCTCCTTTGCCCCTTCTCCCATCTGCTCTGGGCCCCGAG  697

seq1  ACAGCACCGCCACCCCCAGAGGCCCTTCACTCGCTTCCTGGGGTCAGCCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACCGCCACCCCCAGAGGCCCTTCACTCGCTTCCTGGGGTCAGCCT  747

seq1  GAGCTTGGAGAACCAGGAACTGTGGAAGGAATTCAGCGCTGTGGGGACAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGGAGAACCAGGAACTGTGGAAGGAATTCAGCGCTGTGGGGACAG  797

seq1  AGATGATCATCACCAAGGCTGGCAGGTGAGGGACGGCCAAGTCAGCTTTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATCATCACCAAGGCTGGCAGGTGAGGGACGGCCAAGTCAGCTTTT  847

seq1  AGAAAAGAGAATTC  856
       |||||||||||||
seq2  TGAAAAGAGAATTC  861