BAC Information

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BAC

Clone NameB6Ng01-073D16
Chromosome7 (Build37)Y (Build37)
Map Location 22,103,409 - 22,104,607248,367 - 248,461
singlet/doubletsingletsinglet
Overlap geneLOC621561
Upstream geneEG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566, LOC100043569, EG436135, LOC100042996, EG667273, EG667268, EG667262, EG667259, LOC100043574, LOC100043576, Gm1447, LOC100043006, LOC100043583, EG435953, LOC673902, EG667240, EG435951, Gm1446, LOC381937, LOC100043588, LOC670764, EG667215, LOC100043013
Downstream geneEG667199, EG621510, LOC667186, EG628475, LOC100043595, LOC100043596, LOC667358, LOC100043016, LOC100043602, LOC100043604, EG667378, LOC100043607, LOC100043019, LOC100043025, EG667404, EG435940, LOC100043026, EG545929, LOC667421, LOC100043614, LOC667431, LOC100043029, EG620736, EG667444, LOC100043033, LOC100043037, EG667464, EG667469, EG667472, EG667094, LOC100043625, LOC100043626
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073D16.bB6Ng01-073D16.g
ACCDH890422DH890423
length1,20094
definitionDH890422|Mus musculus domesticus DNA, BAC clone: B6Ng01-073D16, 5' end.DH890423|Mus musculus domesticus DNA, BAC clone: B6Ng01-073D16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,103,409 - 22,104,607)(248,367 - 248,461)
sequence
gaattcttcagtcacatggtggcaagaagcacaaacttgtgttccacctg
tgtcctgagtatccatcagtttgtcactcttgttcttgttaatagaggta
aacttatactaagagctagtgtcccaaattttgtgagttattcttgttac
agttgttggtttttcagtgtcttaagtaacatccacattccaattaaggt
cactggtccacagataacagacaataacactgactctaaaagcaacttgt
tctgttccacttctggattcattgtaggcattgtcttcttgcagtttgcc
tatgatgccacattcatgagcatcatggtctggaccagtgtctccatgat
acttctcctccatagacatcgccagcgaatgcagcacatcctcactccca
atcagaaccccagaggccaagctgagacaagagcaacccgtactatcctg
atgctggtggtcacatttgttagcttttatcttctaaattttatttgtat
catctttcatacccttttaatgcattctcatctcttcatacggcttgtca
gtgaggttctgactgcagtcttccccagtatctgccccttactgttgatc
ttcagagatcctaaagatccttgttctgtgcttttcaactgttgaaaacc
agagtcactaaaaaatgccaaatccagaagacagtttcactaataccatt
aagacctttattctttaaatatgttttcaacattttgtatgaacaaggtg
tggtgctcactgctgtaatttttaaagaataaggctatactcatttgtca
atgtgaaatgatttctggttggaatctgactgacatggtaagtgagttat
tcagcatcctctgttctcctgtatataactgtattctgctgcagctggac
tgaaactgatgcaaccaattttcactaaacagttaatgtgttaaatggtc
ctgatcaaactgatactctccgctccgtcttagtgaatacttcaaacttc
cggacaagaacagaatccctctctataattttctctacctgaacaaatga
ggatgcattgttatgattaagtatttttcaggatgaaatttaataaatag
taaaataattgtattgtcattccattttagttaaggaaaatatggcttgc
taactttgggccctactggagggggagtcaagacctgaacatctactttg

actttgtagaccaggctggtctcgaactcagaaatccatctgcctctgcc
tcccaagtgctgcgattaaaggtgttggccaccacgcccggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_22103409_22104607
seq2: B6Ng01-073D16.b_43_1242 (reverse)

seq1  CAAAGTTATGATGTTCAGTGCTTGACTCTCACCTCAGTAGGGCCC-AAGG  49
      ||||||   |||||||||  |||||||| | |  ||||||||||| ||| 
seq2  CAAAGT--AGATGTTCAGGTCTTGACTCCCCCTCCAGTAGGGCCCAAAGT  48

seq1  TAGCAAAGCATATATCTCCTAACTAAAATGGAATGAC-ATACAATATATT  98
      ||||||  ||||| |  | |||||||||||||||||| |||||||   ||
seq2  TAGCAAGCCATATTTTCCTTAACTAAAATGGAATGACAATACAATTATTT  98

seq1  TACTATTTATATAAATTTCATCCTTGAAAATACTTAATCATAACAATGCA  148
      |||||||||| |||||||||||||  ||||||||||||||||||||||||
seq2  TACTATTTAT-TAAATTTCATCCTGAAAAATACTTAATCATAACAATGCA  147

seq1  TCCTCATTTGTTCAGGTAGAGAAA--TATAGAGAGGGATTCTGTTCTTGT  196
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  TCCTCATTTGTTCAGGTAGAGAAAATTATAGAGAGGGATTCTGTTCTTGT  197

seq1  CC-GAAGTTTGAAGTATCAACTAAGACGGAGC-GAGAGTATCAGTTTGAT  244
      || ||||||||||||||  ||||||||||||| |||||||||||||||||
seq2  CCGGAAGTTTGAAGTATTCACTAAGACGGAGCGGAGAGTATCAGTTTGAT  247

seq1  CAGGACCATTTAACACATTAAACTGTTTAGTGAAAATTGGTTGCATCAGT  294
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAGGACCATTTAACACATT-AACTGTTTAGTGAAAATTGGTTGCATCAGT  296

seq1  TTCAGTCCAGCCTGCAGCAGAATACAGTTATATACAGGAGAACAGAGGAT  344
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCCAG-CTGCAGCAGAATACAGTTATATACAGGAGAACAGAGGAT  345

seq1  GCTGAATAACTCACTTACCATGTCAGTCAGATTCCAACCAGAAATCATTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATAACTCACTTACCATGTCAGTCAGATTCCAACCAGAAATCATTT  395

seq1  CACATTGACAAATGAGTATAGCCTTATTCTTTAAAAATTACAGCAGTGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGACAAATGAGTATAGCCTTATTCTTTAAAAATTACAGCAGTGAG  445

seq1  CACCACACCTTGTTCATACAAAATGTTGAAAACATATTTAAAGAATAAAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACCTTGTTCATACAAAATGTTGAAAACATATTTAAAGAATAAAG  495

seq1  GTCTTAATGGTATTAGTGAAACTGTCTTCTGGATTTGGCATTTTTTAGTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAATGGTATTAGTGAAACTGTCTTCTGGATTTGGCATTTTTTAGTG  545

seq1  ACTCTGGTTTTCAACAGTTGAAAAGCACAGAACAAGGATCTTTAGGATCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGTTTTCAACAGTTGAAAAGCACAGAACAAGGATCTTTAGGATCT  595

seq1  CTGAAGATCAACAGTAAGGGGCAGATACTGGGGAAGACTGCAGTCAGAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATCAACAGTAAGGGGCAGATACTGGGGAAGACTGCAGTCAGAAC  645

seq1  CTCACTGACAAGCCGTATGAAGAGATGAGAATGCATTAAAAGGGTATGAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGACAAGCCGTATGAAGAGATGAGAATGCATTAAAAGGGTATGAA  695

seq1  AGATGATACAAATAAAATTTAGAAGATAAAAGCTAACAAATGTGACCACC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATACAAATAAAATTTAGAAGATAAAAGCTAACAAATGTGACCACC  745

seq1  AGCATCAGGATAGTACGGGTTGCTCTTGTCTCAGCTTGGCCTCTGGGGTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGGATAGTACGGGTTGCTCTTGTCTCAGCTTGGCCTCTGGGGTT  795

seq1  CTGATTGGGAGTGAGGATGTGCTGCATTCGCTGGCGATGTCTATGGAGGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGGGAGTGAGGATGTGCTGCATTCGCTGGCGATGTCTATGGAGGA  845

seq1  GAAGTATCATGGAGACACTGGTCCAGACCATGATGCTCATGAATGTGGCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATCATGGAGACACTGGTCCAGACCATGATGCTCATGAATGTGGCA  895

seq1  TCATAGGCAAACTGCAAGAAGACAATGCCTACAATGAATCCAGAAGTGGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGCAAACTGCAAGAAGACAATGCCTACAATGAATCCAGAAGTGGA  945

seq1  ACAGAACAAGTTGCTTTTAGAGTCAGTGTTATTGTCTGTTATCTGTGGAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACAAGTTGCTTTTAGAGTCAGTGTTATTGTCTGTTATCTGTGGAC  995

seq1  CAGTGACCTTAATTGGAATGTGGATGTTACTTAAGACACTGAAAAACCAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACCTTAATTGGAATGTGGATGTTACTTAAGACACTGAAAAACCAA  1045

seq1  CAACTGTAACAAGAATAACTCACAAAATTTGGGACACTAGCTCTTAGTAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTAACAAGAATAACTCACAAAATTTGGGACACTAGCTCTTAGTAT  1095

seq1  AAGTTTACCTCTATTAACAAGAACAAGAGTGACAAACTGATGGATACTCA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTACCTCTATTAACAAGAACAAGAGTGACAAACTGATGGATACTCA  1145

seq1  GGACACAGGTGGAACACAAGTTTGTGCTTCTTGCCACCATGTGACTGAAG  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGGTGGAACACAAGTTTGTGCTTCTTGCCACCATGTGACTGAAG  1195

seq1  AATTC  1199
      |||||
seq2  AATTC  1200

seq1: chrY_248367_248461
seq2: B6Ng01-073D16.g_74_167

seq1  ACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCT  50
      ||||||||||||||||||| |||||||||||||||||| |||||||||| 
seq2  ACTTTGTAGACCAGGCTGGTCTCGAACTCAGAAATCCATCTGCCTCTGCC  50

seq1  TCCCAAGTGCTGGGATTAAAGGAGTGCGCCACCACTGCCCAGCTT  95
      |||||||||||| ||||||||| ||  |||||||| |||| ||||
seq2  TCCCAAGTGCTGCGATTAAAGGTGTTGGCCACCAC-GCCCGGCTT  94