BAC Information

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BAC

Clone NameB6Ng01-078A05
Chromosome7 (Build37)
Map Location 16,902,286 - 17,053,113
singlet/doubletdoublet
Overlap geneBbc3, Sae1, BC057627, Tmem160, Npas1
Upstream geneObox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9
Downstream geneLOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078A05.bB6Ng01-078A05.g
ACCDH893833DH893834
length634993
definitionDH893833|Mus musculus domesticus DNA, BAC clone: B6Ng01-078A05, 5' end.DH893834|Mus musculus domesticus DNA, BAC clone: B6Ng01-078A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,052,480 - 17,053,113)(16,902,286 - 16,903,293)
sequence
gaattctaactttttcctccttgtatgtcttcatctcctcaacacatctg
caaaagtttcactattgtatactcatctctgccatggtattctatacaaa
aatatcagcaggaggtgtaactcaatggcagcacccctgcctagaatcct
ccaatgaggggctgggggtgtgcctcagtggtgtagcccctgcctagaat
cctccaatgaggggctgggggcgtggctcagtggtgtagcccctgcctag
aatcccccagtgagcggctggggcgtggctcagtgggaaagtaactgcct
aacatgtgcaaggctctgggtttagtccacagcactgaaaaaatgaaagc
ccacacactgtactcaagcctgctgatgcatccctgtaaacgtagttttc
aggaagctgaggcaggagaatggcaaatcttagtcaaacttgggttattt
attgagactctatttcaaagaaactaaaaattttcatccaaaatgtatcc
atagtaaaattagatagcatttttaaaaacgtatttgttagctgggcgtg
gtggcgcaagcctttaatcccagcacttgggaggcagaggcaggcggatt
tctgagttcgaggccagcctggtctacaaagtga
gaattctgccccagccccttcccacctaggttgggagagtgtgccctggt
gagtgaggggctgaaaaatggctggtaagagggttgcgctcagttttggg
accgatctcgaacccacaccttttgctcactaacccactgtctgcgggtc
caagctaattcctacttcctcctctccccagagacaagaagagcagcatc
gacaccgaccctcaccctggagggtcatgtacaatctcttcatgggactc
ctccccttacccagggatcctggagccccagaaatggagcccaactaggt
gcctacacccgcccgggggacgtcggagacttggggggcaggaccccctc
cgccttctgacaccctggccagcgcgggggactttttctgcaccatgtag
catactggactgccagccttgcccgtcccaggggcaggcaagggatgcca
ctcgagcccgggcagcctgggtgcactgatggagatacggacttgggggg
accctggcctcccgaaagccagggaagggagggctgaaggactcatggtg
actgagggggtggggaccgagccgcccgcctctgccgcccaccaccatct
caggaaaggctgctggtgctggctgcccgttccagctgcaggggggacgc
tgggggtgtccccagtgcgccttcactttgggcctggcctcaggcccctg
gtgcttccccccctcctcctgaggagggggtctgtgaagagcatatgagt
caaacctgaccactagcctcctggagccagagaatggggggcgtgtgaag
ggcttcttaacccagtgcccagccatcttccctgagccgccggcgggcgg
tgaacgatgcctgctcatcttcatctgggggtgtccaggaggggtcagac
tgtgaatctgtgctctgcccggacaccccccccccccatcccatcatctc
ttgctagtttaaaagagcacgtgtaacactggcattctttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_17052480_17053113
seq2: B6Ng01-078A05.b_44_677 (reverse)

seq1  TCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTG  50

seq1  CCTCCCAAGTGCTGGGATTAAAGGCTTGCGCCACCACGCCCAGCTAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAGTGCTGGGATTAAAGGCTTGCGCCACCACGCCCAGCTAACAA  100

seq1  ATACGTTTTTAAAAATGCTATCTAATTTTACTATGGATACATTTTGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTTTTTAAAAATGCTATCTAATTTTACTATGGATACATTTTGGATG  150

seq1  AAAATTTTTAGTTTCTTTGAAATAGAGTCTCAATAAATAACCCAAGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTTAGTTTCTTTGAAATAGAGTCTCAATAAATAACCCAAGTTTG  200

seq1  ACTAAGATTTGCCATTCTCCTGCCTCAGCTTCCTGAAAACTACGTTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGATTTGCCATTCTCCTGCCTCAGCTTCCTGAAAACTACGTTTACA  250

seq1  GGGATGCATCAGCAGGCTTGAGTACAGTGTGTGGGCTTTCATTTTTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCATCAGCAGGCTTGAGTACAGTGTGTGGGCTTTCATTTTTTCAG  300

seq1  TGCTGTGGACTAAACCCAGAGCCTTGCACATGTTAGGCAGTTACTTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGGACTAAACCCAGAGCCTTGCACATGTTAGGCAGTTACTTTCCC  350

seq1  ACTGAGCCACGCCCCAGCCGCTCACTGGGGGATTCTAGGCAGGGGCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCACGCCCCAGCCGCTCACTGGGGGATTCTAGGCAGGGGCTACA  400

seq1  CCACTGAGCCACGCCCCCAGCCCCTCATTGGAGGATTCTAGGCAGGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGCCACGCCCCCAGCCCCTCATTGGAGGATTCTAGGCAGGGGCT  450

seq1  ACACCACTGAGGCACACCCCCAGCCCCTCATTGGAGGATTCTAGGCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACTGAGGCACACCCCCAGCCCCTCATTGGAGGATTCTAGGCAGGG  500

seq1  GTGCTGCCATTGAGTTACACCTCCTGCTGATATTTTTGTATAGAATACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCCATTGAGTTACACCTCCTGCTGATATTTTTGTATAGAATACCA  550

seq1  TGGCAGAGATGAGTATACAATAGTGAAACTTTTGCAGATGTGTTGAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGATGAGTATACAATAGTGAAACTTTTGCAGATGTGTTGAGGAG  600

seq1  ATGAAGACATACAAGGAGGAAAAAGTTAGAATTC  634
      ||||||||||||||||||||||||||||||||||
seq2  ATGAAGACATACAAGGAGGAAAAAGTTAGAATTC  634

seq1: chr7_16902286_16903293
seq2: B6Ng01-078A05.g_70_1062

seq1  GAATTCTGCCCCAGCCCCTTCCCACCTAGGTTGGGAGAGTGTGCCCTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCCAGCCCCTTCCCACCTAGGTTGGGAGAGTGTGCCCTGGT  50

seq1  GAGTGAGGGGCTGAAAAATGGCTGGTAAGAGGGTTGCGCTCAGTTTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGGGGCTGAAAAATGGCTGGTAAGAGGGTTGCGCTCAGTTTTGGG  100

seq1  ACCGATCTCGAACCCACACCTTTTGCTCACTAACCCACTGTCTGCGGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATCTCGAACCCACACCTTTTGCTCACTAACCCACTGTCTGCGGGTC  150

seq1  CAAGCTAATTCCTACTTCCTCCTCTCCCCAGAGACAAGAAGAGCAGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTAATTCCTACTTCCTCCTCTCCCCAGAGACAAGAAGAGCAGCATC  200

seq1  GACACCGACCCTCACCCTGGAGGGTCATGTACAATCTCTTCATGGGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCGACCCTCACCCTGGAGGGTCATGTACAATCTCTTCATGGGACTC  250

seq1  CTCCCCTTACCCAGGGATCCTGGAGCCCCAGAAATGGAGCCCAACTAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTTACCCAGGGATCCTGGAGCCCCAGAAATGGAGCCCAACTAGGT  300

seq1  GCCTACACCCGCCCGGGGGACGTCGGAGACTTGGGGGGCAGGACCCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACACCCGCCCGGGGGACGTCGGAGACTTGGGGGGCAGGACCCCCTC  350

seq1  CGCCTTCTGACACCCTGGCCAGCGCGGGGGACTTTTTCTGCACCATGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTCTGACACCCTGGCCAGCGCGGGGGACTTTTTCTGCACCATGTAG  400

seq1  CATACTGGACTGCCAGCCTTGCCCGTCCCAGGGGCAGGCAAGGGATGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGGACTGCCAGCCTTGCCCGTCCCAGGGGCAGGCAAGGGATGCCA  450

seq1  CTCGAGCCCGGGCAGCCTGGGTGCACTGATGGAGATACGGACTTGGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGCCCGGGCAGCCTGGGTGCACTGATGGAGATACGGACTTGGGGGG  500

seq1  ACCCTGGCCTCCCGAAAGCCAGGGAAGGGAGGGCTGAAGGACTCATGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGCCTCCCGAAAGCCAGGGAAGGGAGGGCTGAAGGACTCATGGTG  550

seq1  ACTGAGGGGGTGGGGACCGAGCCGCCCGCCTCTGCCGCCCACCACCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGGGGTGGGGACCGAGCCGCCCGCCTCTGCCGCCCACCACCATCT  600

seq1  CAGGAAAGGCTGCTGGTGCTGGCTGCCCGTTCCAGCTGCAGGGGGGACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGGCTGCTGGTGCTGGCTGCCCGTTCCAGCTGCAGGGGGGACGC  650

seq1  TGGGGGTGTCCCCAGTGCGCCTTCACTTTGGGCCTGGCCTCAGGCCCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTGTCCCCAGTGCGCCTTCACTTTGGGCCTGGCCTCAGGCCCCTG  700

seq1  GTGCTTCCCCCCCTCCTCCTGAGGAGGGGGTCTGTGAAGAGCATATGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGCTTCCCCCCCTCCTCCTGAGGAGGGGGTCTGTGAAGAGCATATGAGT  750

seq1  CAAACCTGACCACTAGCCTCCTGGAGCCAGAGAATGGGGGGCGTGTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTGACCACTAGCCTCCTGGAGCCAGAGAATGGGGGGCGTGTGAAG  800

seq1  GCCTTCTTAACCCAGTGCCCAGCCATCTTCCCTGAGCCGCCGGCGGGCGG  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTAACCCAGTGCCCAGCCATCTTCCCTGAGCCGCCGGCGGGCGG  850

seq1  TGAACGATGCCTGCCTCACCTTCATCTGGGGGTGTCCAGGAGGGGTCCAG  900
      ||||||||||||| |||| ||||||||||||||||||||||||||| |||
seq2  TGAACGATGCCTG-CTCATCTTCATCTGGGGGTGTCCAGGAGGGGT-CAG  898

seq1  ACTGTGAATCCTGTGCTCTGCCCGGGACCACCCCCCCCCCCCCAATCCCC  950
      ||||||||| |||||||||||||||    || ||||||||||| || |||
seq2  ACTGTGAAT-CTGTGCTCTGCCCGG----ACACCCCCCCCCCCCAT-CCC  942

seq1  ATCCATCTCATTGCATAGGTTTAGAGAGAGCACGTGTGACCACTGGCATT  1000
      || |||||| |||| || ||||| | ||||||||||| | ||||||||||
seq2  AT-CATCTC-TTGC-TA-GTTTA-AAAGAGCACGTGT-AACACTGGCATT  986

seq1  CATTTGGG  1008
      | ||||||
seq2  C-TTTGGG  993