BAC Information

Click to search

BAC

Clone NameB6Ng01-079P05
Chromosome7 (Build37)
Map Location 78,788,670 - 78,971,900
singlet/doubletdoublet
Overlap geneLOC665535
Upstream genenone
Downstream geneMctp2, LOC100042873, LOC100042880, LOC233391, LOC665570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079P05.bB6Ng01-079P05.g
ACCDH895219DH895220
length893698
definitionDH895219|Mus musculus domesticus DNA, BAC clone: B6Ng01-079P05, 5' end.DH895220|Mus musculus domesticus DNA, BAC clone: B6Ng01-079P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,788,670 - 78,789,574)(78,971,203 - 78,971,900)
sequence
gaattctctggtcattcaattcatgtaataatgtagagatatatgatatt
atatatagttatatcatatgataagctactcaactcctcatggccaataa
aaccaacaaacattaaagttactataacctttatataataatttaaatgt
gcagatggtgtttggcagtgctagcattgtgttctgcaaatgataaaaaa
tgtatctcattgtttgagatacataaccatttataaggagtcccagtatt
ttaataactacctggaatcttcttagatgactaagaggtaactagactcc
aagacataaagctatgtcaaataaatgtataacatatggacgacaatcag
tcaaattggttgtcaacttgttaatttctcataagtactatacctgattg
aaaccttctatctcaataagcttatttacaaaggacttgtatccagggaa
taataaaactaaagtagttatctggtcatattggtttgtgccttatgatg
tgttattcattctaagttcaccgtgttgactttggcttgaaagagcctgg
ccaccctcactgtgcattgcctgtaggacacatctggggattgcttctct
ggcttgtcttttgaggctaccaaaaacctctataggagattttcttcagg
tgagctgattctaagaattcagctctcatggaaacttgactggaatatct
tcagactcttcagttagaacttacttattattgcctacccttaaaagcgc
cttacttaacatcagagattcctagtactggcagaaaggagtcattgtct
caaatactgtctgaccatgttccagaagaactagaaatctactgctgctt
agtcactcttatggcctcttccacttgaatatgcattgtttga
gaattctctttctgagattgctcggcaagtctttaagttcttgctccact
ttgaagagactggaaatcatgggtactgcttaatgggtgtgatttatgcg
gaaaggcaatatgaagttcctgctggtaggcccatgtgcagacaaggcct
tggccctagaccgagaagttggctaatcagggacccactttttttttttt
tttttgcatgttttaagtttaaagtttttatacacatgtctttttttttt
ttaacatgtctgctgtggttttgcttcttaattgtgtcacagactgtcta
ccagccagaattctgcaagcagaagtgctgctgttgttccaagtgatgga
actgtgactggaagtttggtcctgctgtcatggtgatggtagtgacctag
tgtgactcccggagaaacccttggatggcaagggctacagaaaggataga
ccatgccaggtttacaggtaggaagtgaggttagctctaggaagaaagaa
ggaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaca
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
gaaaggaagggaaagaaaaaaagaaactgggagaaggaggactaaagaag
agagagagtgcaagggggagaggaagagggagagggagagggagaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_78788670_78789574
seq2: B6Ng01-079P05.b_49_941

seq1  GAATTCTCTGGTCATTCAATTCATGTAATAATGTAGAGATATATGATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTCATTCAATTCATGTAATAATGTAGAGATATATGATATT  50

seq1  ATATATAGTTATATCATATGATAAGCTACTCAACTCCTCATGGCCAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGTTATATCATATGATAAGCTACTCAACTCCTCATGGCCAATAA  100

seq1  AACCAACAAACATTAAAGTTACTATAACCTTTATATAATAATTTAAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACAAACATTAAAGTTACTATAACCTTTATATAATAATTTAAATGT  150

seq1  GCAGATGGTGTTTGGCAGTGCTAGCATTGTGTTCTGCAAATGATAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGGTGTTTGGCAGTGCTAGCATTGTGTTCTGCAAATGATAAAAAA  200

seq1  TGTATCTCATTGTTTGAGATACATAACCATTTATAAGGAGTCCCAGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTCATTGTTTGAGATACATAACCATTTATAAGGAGTCCCAGTATT  250

seq1  TTAATAACTACCTGGAATCTTCTTAGATGACTAAGAGGTAACTAGACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAACTACCTGGAATCTTCTTAGATGACTAAGAGGTAACTAGACTCC  300

seq1  AAGACATAAAGCTATGTCAAATAAATGTATAACATATGGACGACAATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATAAAGCTATGTCAAATAAATGTATAACATATGGACGACAATCAG  350

seq1  TCAAATTGGTTGTCAACTTGTTAATTTCTCATAAGTACTATACCTGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTGGTTGTCAACTTGTTAATTTCTCATAAGTACTATACCTGATTG  400

seq1  AAACCTTCTATCTCAATAAGCTTATTTACAAAGGACTTGTATCCAGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTCTATCTCAATAAGCTTATTTACAAAGGACTTGTATCCAGGGAA  450

seq1  TAATAAAACTAAAGTAGTTATCTGGTCATATTGGTTTGTGCCTTATGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAACTAAAGTAGTTATCTGGTCATATTGGTTTGTGCCTTATGATG  500

seq1  TGTTATTCATTCTAAGTTCACCGTGTTGACTTTGGCTTGAAAGAGCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTCATTCTAAGTTCACCGTGTTGACTTTGGCTTGAAAGAGCCTGG  550

seq1  CCACCCTCACTGTGCATTGCCTGTAGGACACATCTGGGGATTGCTTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTCACTGTGCATTGCCTGTAGGACACATCTGGGGATTGCTTCTCT  600

seq1  GGCTTGTCTTTTGAGGCTACCAAAAACCTCTATAGGAGATTTTCTTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTCTTTTGAGGCTACCAAAAACCTCTATAGGAGATTTTCTTCAGG  650

seq1  TGAGCTGATTCTAAGAATTCAGCTCTCATGGAAACTTGACTGGAATATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGATTCTAAGAATTCAGCTCTCATGGAAACTTGACTGGAATATCT  700

seq1  TCAGACTCTTCAGTTAGAACTTACTTATTATTGCCTACCCTTAAAAGCGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTCTTCAGTTAGAACTTACTTATTATTGCCTACCCTTAAAAGCGC  750

seq1  CTTACTTAACATCAGAGAATTCCTAGTAACTGGCAAGAAAGGAGTCATTG  800
      ||||||||||||||||| ||||||||| |||||| |||||||||||||||
seq2  CTTACTTAACATCAGAG-ATTCCTAGT-ACTGGC-AGAAAGGAGTCATTG  797

seq1  TCTCAGATACTGTCTGACCATGTCCCAGAAGAAACTAGAAAATTCATACC  850
      ||||| ||||||||||||||||| ||||||| |||||||||  || || |
seq2  TCTCAAATACTGTCTGACCATGTTCCAGAAG-AACTAGAAA--TC-TA-C  842

seq1  TGCTGCTTTAGTCCACTCTTAT-GCCTCTTCCACTCTGAATAATGCATTG  899
      |||||| ||||| ||||||||| |||||||||||| ||||| ||||||||
seq2  TGCTGC-TTAGT-CACTCTTATGGCCTCTTCCACT-TGAAT-ATGCATTG  888

seq1  TCTTGA  905
      | ||||
seq2  T-TTGA  893

seq1: chr7_78971203_78971900
seq2: B6Ng01-079P05.g_70_767 (reverse)

seq1  CCCTCTCCCTCTCCCTCTCCCTCTTCCTCTCCCCCTTGCACTCTCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCCTCTCCCTCTCCCTCTTCCTCTCCCCCTTGCACTCTCTCTCT  50

seq1  TCTTTAGTCCTCCTTCTCCCAGTTTCTTTTTTTCTTTCCCTTCCTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTCCTCCTTCTCCCAGTTTCTTTTTTTCTTTCCCTTCCTTTCTT  100

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTG  150

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTT  200

seq1  CTTTCTTCCTAGAGCTAACCTCACTTCCTACCTGTAAACCTGGCATGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCCTAGAGCTAACCTCACTTCCTACCTGTAAACCTGGCATGGTC  250

seq1  TATCCTTTCTGTAGCCCTTGCCATCCAAGGGTTTCTCCGGGAGTCACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTTCTGTAGCCCTTGCCATCCAAGGGTTTCTCCGGGAGTCACACT  300

seq1  AGGTCACTACCATCACCATGACAGCAGGACCAAACTTCCAGTCACAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACTACCATCACCATGACAGCAGGACCAAACTTCCAGTCACAGTTC  350

seq1  CATCACTTGGAACAACAGCAGCACTTCTGCTTGCAGAATTCTGGCTGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTTGGAACAACAGCAGCACTTCTGCTTGCAGAATTCTGGCTGGTA  400

seq1  GACAGTCTGTGACACAATTAAGAAGCAAAACCACAGCAGACATGTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCTGTGACACAATTAAGAAGCAAAACCACAGCAGACATGTTAAAA  450

seq1  AAAAAAAAGACATGTGTATAAAAACTTTAAACTTAAAACATGCAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGACATGTGTATAAAAACTTTAAACTTAAAACATGCAAAAAAA  500

seq1  AAAAAAAAAAGTGGGTCCCTGATTAGCCAACTTCTCGGTCTAGGGCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGTGGGTCCCTGATTAGCCAACTTCTCGGTCTAGGGCCAAG  550

seq1  GCCTTGTCTGCACATGGGCCTACCAGCAGGAACTTCATATTGCCTTTCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTCTGCACATGGGCCTACCAGCAGGAACTTCATATTGCCTTTCCG  600

seq1  CATAAATCACACCCATTAAGCAGTACCCATGATTTCCAGTCTCTTCAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATCACACCCATTAAGCAGTACCCATGATTTCCAGTCTCTTCAAAG  650

seq1  TGGAGCAAGAACTTAAAGACTTGCCGAGCAATCTCAGAAAGAGAATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAAGAACTTAAAGACTTGCCGAGCAATCTCAGAAAGAGAATTC  698