BAC Information

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BAC

Clone NameB6Ng01-080D18
Chromosome7 (Build37)
Map Location 3,739,292 - 3,740,404
singlet/doubletsinglet
Overlap geneLOC100041146
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137
Downstream genePira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080D18.bB6Ng01-080D18.g
ACCDH895430DH895431
length1,1091,150
definitionDH895430|Mus musculus domesticus DNA, BAC clone: B6Ng01-080D18, 5' end.DH895431|Mus musculus domesticus DNA, BAC clone: B6Ng01-080D18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtctgacatggattaggtatggatttgaatctgttttcatcag
acttcaacagggtttgtaattattaaacctctcccagaggcaccataggc
catggctacactgagagcgagggtctgacagggatcctgtgaatattgtt
tatttgagagtgaggagaagaggttggcaatgggaaccagtccctgtata
ggatcctatatctgtctgtggcctctccaagatggtttttccaactacat
aaaatctttggattgcattagcagggagcatccctagaatgattcaggct
gcctcccaccctcatgagggtgaatacccatctgactgacactctgcagc
tttaaaccctatgctagctgatatttattgtaaatggaaaataccgaggc
acccctttatctcagaaagatctagatttttctttcctttgaccatgaac
tgcagagtcactgctgcatgacaacacattggaagataggtatgtatagc
acctgaagatgctcctaagggtggatgtcacagaactcatagagaatctt
agaattatgtcccatgagctagactgaagcagcgggagtcccccaccatg
gctatttgacccacccttgccatgcatcagtagactgtgggctagactga
ctgtagaatcaggtctggggatctcctctatcaggagaggtaacagcttc
aatcatcaccaaaaatacacagacatgtgaaccaggcttctcccattcat
actcagagaaagagcagcccagcaatggaagggactgtcaaagtaggatc
tccagctgcagctttatcaggctataagcccctttacccatctgagcctt
cattccaacagagtctttgttagtaatcccgggacagattctatgcaggg
gaaatgtttgtttcttagggatttatgggggaggtgactttctaggttct
ttgctcacaatcttacccagctgtctcatcatcaagttgaggctcatgcc
tctctttggatgctaccttcttagcccaacagattagcccagctctgggt
tcctcttttgggatatttgctggtcctgatactcccaagctggcataacc
tagaaatga
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcattccagtcagaatggctaagatcaaaaactcaggtgatagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcttca
gaaaattggacatagtactaccagaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatagatacagaaaatgtggtacatttacacaatg
aaatactactcagctattttaaaaaatgaatttatgaaattcctaggcaa
acggatggacctggagggtatgatcctgagtgaggtaacccaatcacaaa
ggaactctcacaatatgtactcactgataagtggatattagcccagaaac
ttaggatacccaagattaaagatacaacttgccaaaagcatgaaattcaa
gaagaacgaataccaaagtgtggacaccttaccctttcttagaaatggga
acaaaacacccatggaaggagttacagagacaaaatttggagctgtgatg
aaaggatggaccatctagtgattaccatatgcagggatccatcccataat
cagcttccaaatgctgattccattgcatacactagcaatattttgctgaa
aggacccagatatagctctctcttgtgagactatgccgggccttgcaaac
acagaagtggatgatcacagttagctaattggatgggtcacacggcccca
tggagaagctagagaatacccatgagtaaagggaactgcaccctataagt
ggaacaacatatgactaaccgtacccgagctcttgtcctagctgcatatg
gtacaaagaatgctattgcatcactgcaagaaggccattgactgcaactt
attgacccagtcaggaacatgcatggccaaagggtagtgggtgtatcata

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_3739292_3740404
seq2: B6Ng01-080D18.b_41_1149

seq1  GAATTCTGTCTGACATGGATTAGGTATGGATTTGAATCTGTTTTCATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTGACATGGATTAGGTATGGATTTGAATCTGTTTTCATCAG  50

seq1  ACTTCAACAGGGTTTGTAATTATTAAACCTCTCCCAGAGGCACCATAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAACAGGGTTTGTAATTATTAAACCTCTCCCAGAGGCACCATAGGC  100

seq1  CATGGCTACACTGAGAGCGAGGGTCTGACAGGGATCCTGTGAATATTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTACACTGAGAGCGAGGGTCTGACAGGGATCCTGTGAATATTGTT  150

seq1  TATTTGAGAGTGAGGAGAAGAGGTTGGCAATGGGAACCAGTCCCTGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGAGTGAGGAGAAGAGGTTGGCAATGGGAACCAGTCCCTGTATA  200

seq1  GGATCCTATATCTGTCTGTGGCCTCTCCAAGATGGTTTTTCCAACTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTATATCTGTCTGTGGCCTCTCCAAGATGGTTTTTCCAACTACAT  250

seq1  AAAATCTTTGGATTGCATTAGCAGGGAGCATCCCTAGAATGATTCAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTTGGATTGCATTAGCAGGGAGCATCCCTAGAATGATTCAGGCT  300

seq1  GCCTCCCACCCTCATGAGGGTGAATACCCATCTGACTGACACTCTGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCACCCTCATGAGGGTGAATACCCATCTGACTGACACTCTGCAGC  350

seq1  TTTAAACCCTATGCTAGCTGATATTTATTGTAAATGGAAAATACCGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCCTATGCTAGCTGATATTTATTGTAAATGGAAAATACCGAGGC  400

seq1  ACCCCTTTATCTCAGAAAGATCTAGATTTTTCTTTCCTTTGACCATGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTTATCTCAGAAAGATCTAGATTTTTCTTTCCTTTGACCATGAAC  450

seq1  TGCAGAGTCACTGCTGCATGACAACACATTGGAAGATAGGTATGTATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGTCACTGCTGCATGACAACACATTGGAAGATAGGTATGTATAGC  500

seq1  ACCTGAAGATGCTCCTAAGGGTGGATGTCACAGAACTCATAGAGAATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAGATGCTCCTAAGGGTGGATGTCACAGAACTCATAGAGAATCTT  550

seq1  AGAATTATGTCCCATGAGCTAGACTGAAGCAGCGGGAGTCCCCCACCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATGTCCCATGAGCTAGACTGAAGCAGCGGGAGTCCCCCACCATG  600

seq1  GCTATTTGACCCACCCTTGCCATGCATCAGTAGACTGTGGGCTAGACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGACCCACCCTTGCCATGCATCAGTAGACTGTGGGCTAGACTGA  650

seq1  CTGTAGAATCAGGTCTGGGGATCTCCTCTATCAGGAGAGGTAACAGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAATCAGGTCTGGGGATCTCCTCTATCAGGAGAGGTAACAGCTTC  700

seq1  AATCATCACCAAAAATACACAGACATGTGAACCAGGCTTCTCCCATTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCACCAAAAATACACAGACATGTGAACCAGGCTTCTCCCATTCAT  750

seq1  ACTCAGAGAAAGAGCAGCCCAGCAATGGAAGGGACTGTCAAAGTAGGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGAAAGAGCAGCCCAGCAATGGAAGGGACTGTCAAAGTAGGATC  800

seq1  TCCAGCTGCAGCTTTATCAGGCTATAAGCCCCTTTACCCATCTGAGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGCAGCTTTATCAGGCTATAAGCCCCTTTACCCATCTGAGCCTT  850

seq1  CATTCCAACAGAGTCTTTGTTAGTAATCCCGGGACAGATTCTATGCAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAACAGAGTCTTTGTTAGTAATCCCGGGACAGATTCTATGCAGGG  900

seq1  GAAATGTTTGTTTCTTAGGGATATAT-GGGGAGGTGACTTTCTAGGTTCT  949
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  GAAATGTTTGTTTCTTAGGGATTTATGGGGGAGGTGACTTTCTAGGTTCT  950

seq1  TTGCTCACAATCTTACCCAGCTGTCTCATCATCCAAGTTGAGGCTCAATG  999
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  TTGCTCACAATCTTACCCAGCTGTCTCATCAT-CAAGTTGAGGCTC-ATG  998

seq1  CCTCTCTTTGGATGCTACCTTCTGTAGCCCAACAGTTAAGCCCCAGCCTC  1049
      ||||||||||||||||||||||| ||||||||||| | || ||||| |||
seq2  CCTCTCTTTGGATGCTACCTTCT-TAGCCCAACAGATTAG-CCCAG-CTC  1045

seq1  T-GGTTTCTCTTTTGGGATATTTGCTGGTCTTTGATACTCCCAAGCTGGC  1098
      | |||| |||||||||||||||||||||||  ||||||||||||||||||
seq2  TGGGTTCCTCTTTTGGGATATTTGCTGGTC-CTGATACTCCCAAGCTGGC  1094

seq1  ATAACTCAGAAATGA  1113
      |||||  ||||||||
seq2  ATAACCTAGAAATGA  1109