BAC Information

Click to search

BAC

Clone NameB6Ng01-083F05
Chromosome7 (Build37)
Map Location 49,567,888 - 49,569,073
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668565, AI987944, EG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2
Downstream geneLOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083F05.bB6Ng01-083F05.g
ACCDH897618DH897619
length1,1761,248
definitionDH897618|Mus musculus domesticus DNA, BAC clone: B6Ng01-083F05, 5' end.DH897619|Mus musculus domesticus DNA, BAC clone: B6Ng01-083F05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttgcttagctctgaaccccatttttttaatggggttatttgaa
tttctggagtctagcttcttgagctctttgtatatattggatattagtcc
cctatcagatttaggattggtaaaaatcctttcccaatctgttggtggcc
tttttgtcttattgacagtgtcttttgcctttcagaagctttgcaatttt
atgcggttccatttgtcaattcttgatcttacagcataacaaatctaact
ctttagtcactttctgtgtaaaacaatagtaaaaattacaataagaacaa
caaataacagcaacaacaaaaccctcatacctgaaataaagatgaaggga
atgtgaggaatccaagttttaagtgaatactgcatattgatgaatattgt
ttaaaaatataaagaaatgatgttaaaaacactgtgtccaggatgaaatg
aaatagtccaataatttgtgggaaaggttattgtcaccaccactattaaa
tttatcagttaaccttcccatatttatgtattagcgtttatttccattac
cctaattctaatggaagttgaacacttttcatgtatcttaacttgttcac
tccataatttttggagagcaaatgatataattttgttcaccttcttaata
ttcatccttttcactcatttgtggttgttcattatatttggtagctagga
ctcttttctgggtatctggtattctgatagaatactggaggtattctcta
ttgtttatgtttccagctagcatacatttattttcaagggtttaataagg
ccattttattttttattagatattttctgtatttacgtttaaaatattat
cccctttcctagtttcccctttgaaaatcccttatcctttcccccctccc
cctgttccccaatccaatcactcctgcttcctcacacaggcactctctct
actggggcatagaactttctcaagaccaagggtttctccactggtgacaa
ctaaaccattttctgctacattatgcagctagagccacagtccctctgtg
gtgttttctttgaatggtggcttagtacaaggggagctcatggttactgg
tagttcataattgtactcttccatgggttcaatccttcagcctcacagat
acttgtctgccctttcaatggtgacc
gtattcctcagttgagagctctttgtttatctctgtattccatttttaat
agggttatttgattttcaggagtccatcttcttctgttctttatatatat
tggatgttagtcccctatatgatttaggattggttaagatcctttcacaa
tatgttgttggcctttttgtcttattgacagtgtctttgccttacagaag
ctttgcagtttcatgaggtcccatttgtcaattctcaatcttacagcaca
agccattgctgttctgttcaggatttttttcccctgtgcctatatctgca
aggcttttccccactttctcctctataagttttaatgtctctggttttat
gtggagttccttgatatacttagacttgagctttttacacggagaaaaga
atgtagcgtttcacattcttctacatgataacctacagttgtgttagcac
cattttttgaaaatgctgtcttttttccatgggatggttttatctccctg
tcaaagatcaggtgatcatgagtgtgttggttcatctctgagttttcagt
tctattccattgatttacctgtctgttgctctaacagtaccaagcagttt
ttatcacaattgctctgtagtgcagcttgaggtcaggcatggtgattctc
ccagatgttcttttattgttgagaatagtttttgctatccgaggtttttc
tgttattccagatgaatttgcaaattgctctttctaactcagtgaagaat
tgagttggaattttgatgggagtttcattgaatctgtaaattgctttcaa
caggatagccatttttactatattaatcctgtcaatccatgagcatgaga
gatatttctgtatttcttaaatattctttgatttctttcttcagagactt
gaagttcttatcatgcagctctttcacttccttagttagagtcacaccaa
ggtattttatattattttgtgactattgtgaagagtgtggtttccctaat
ttttttcgagaatgtttatcctttgtgtagaaatatgtcactgacttgtt
tgagaatttttatatcaactactgtactgagctgtttatcagggctaagt
agtttctggtgaaattttaagggtcctttattactatacttcatctgcaa
aaggagtatttgaccctctgccaattgatatatcccttgactcactgttg
tcatgtacaggctagagatccgtgtcatctatattcgataagatgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49567888_49569073
seq2: B6Ng01-083F05.b_48_1223 (reverse)

seq1  GGTCACCAATGAAAGAGCCAGACAAAGTATCCTGTGA-GCTGAAGGGATT  49
      |||||||| |||||| | ||||| |||||| |||||| ||||||||   |
seq2  GGTCACCATTGAAAG-GGCAGAC-AAGTAT-CTGTGAGGCTGAAGG--AT  45

seq1  TGAAACCCCATGGGAAGAAGTACAA-TATGAACTAACCAGTAACCACTGA  98
      ||||  ||||| ||||| ||||||| |||||||| ||||||||||| |||
seq2  TGAA--CCCAT-GGAAG-AGTACAATTATGAACT-ACCAGTAACCA-TGA  89

seq1  GCT-CACTTGTACTAAACCACCAATCAAAGAAAACA-CACAGAGGGACTT  146
      ||| | |||||||||| |||||| |||||||||||| ||||||||||| |
seq2  GCTCCCCTTGTACTAAGCCACCATTCAAAGAAAACACCACAGAGGGAC-T  138

seq1  GTGGCTCTAGCTGCAT-ATGTAGCAGAGAATGGTTTAGTTGGTCACCAGT  195
      |||||||||||||||| |||||||||| |||||||||||| |||||||||
seq2  GTGGCTCTAGCTGCATAATGTAGCAGAAAATGGTTTAGTT-GTCACCAGT  187

seq1  GGGAGAAACCCTTGGTCTTGAGAAAGTTCTATGCCCCAGTAGAGGAGAGT  245
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  -GGAGAAACCCTTGGTCTTGAGAAAGTTCTATGCCCCAGTAGA-GAGAGT  235

seq1  GCCTGTGTGAGGAAGCAGGAGTGATTGGATTGGGGAACAGGGGGAGGGGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTGAGGAAGCAGGAGTGATTGGATTGGGGAACAGGGGGAGGGGG  285

seq1  GAAAGGATAAGGGATTTTCAAAGGGGAAACTAGGAAAGGGGATAATATTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATAAGGGATTTTCAAAGGGGAAACTAGGAAAGGGGATAATATTT  335

seq1  TAAACGTAAATACAGAAAATATCTAATAAAAAATAAAATGGCCTTATTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGTAAATACAGAAAATATCTAATAAAAAATAAAATGGCCTTATTAA  385

seq1  ACCCTTGAAAATAAATGTATGCTAGCTGGAAACATAAACAATAGAGAATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGAAAATAAATGTATGCTAGCTGGAAACATAAACAATAGAGAATA  435

seq1  CCTCCAGTATTCTATCAGAATACCAGATACCCAGAAAAGAGTCCTAGCTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGTATTCTATCAGAATACCAGATACCCAGAAAAGAGTCCTAGCTA  485

seq1  CCAAATATAATGAACAACCACAAATGAGTGAAAAGGATGAATATTAAGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATATAATGAACAACCACAAATGAGTGAAAAGGATGAATATTAAGAA  535

seq1  GGTGAACAAAATTATATCATTTGCTCTCCAAAAATTATGGAGTGAACAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACAAAATTATATCATTTGCTCTCCAAAAATTATGGAGTGAACAAG  585

seq1  TTAAGATACATGAAAAGTGTTCAACTTCCATTAGAATTAGGGTAATGGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATACATGAAAAGTGTTCAACTTCCATTAGAATTAGGGTAATGGAA  635

seq1  ATAAACGCTAATACATAAATATGGGAAGGTTAACTGATAAATTTAATAGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACGCTAATACATAAATATGGGAAGGTTAACTGATAAATTTAATAGT  685

seq1  GGTGGTGACAATAACCTTTCCCACAAATTATTGGACTATTTCATTTCATC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGACAATAACCTTTCCCACAAATTATTGGACTATTTCATTTCATC  735

seq1  CTGGACACAGTGTTTTTAACATCATTTCTTTATATTTTTAAACAATATTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACACAGTGTTTTTAACATCATTTCTTTATATTTTTAAACAATATTC  785

seq1  ATCAATATGCAGTATTCACTTAAAACTTGGATTCCTCACATTCCCTTCAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATATGCAGTATTCACTTAAAACTTGGATTCCTCACATTCCCTTCAT  835

seq1  CTTTATTTCAGGTATGAGGGTTTTGTTGTTGCTGTTATTTGTTGTTCTTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTCAGGTATGAGGGTTTTGTTGTTGCTGTTATTTGTTGTTCTTA  885

seq1  TTGTAATTTTTACTATTGTTTTACACAGAAAGTGACTAAAGAGTTAGATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTTTTACTATTGTTTTACACAGAAAGTGACTAAAGAGTTAGATT  935

seq1  TGTTATGCTGTAAGATCAAGAATTGACAAATGGAACCGCATAAAATTGCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGCTGTAAGATCAAGAATTGACAAATGGAACCGCATAAAATTGCA  985

seq1  AAGCTTCTGAAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCACCAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCTGAAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCACCAA  1035

seq1  CAGATTGGGAAAGGATTTTTACCAATCCTAAATCTGATAGGGGACTAATA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGGGAAAGGATTTTTACCAATCCTAAATCTGATAGGGGACTAATA  1085

seq1  TCCAATATATACAAAGAGCTCAAGAAGCTAGACTCCAGAAATTCAAATAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATATATACAAAGAGCTCAAGAAGCTAGACTCCAGAAATTCAAATAA  1135

seq1  CCCCATTAAAAAAATGGGGTTCAGAGCTAAGCAAGGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTAAAAAAATGGGGTTCAGAGCTAAGCAAGGAATTC  1176