BAC Information

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BAC

Clone NameB6Ng01-083O14
Chromosome7 (Build37)Y (Build37)
Map Location 5,524,007 - 5,525,1621,870,346 - 1,870,415
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePtprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705
Downstream geneLOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083O14.bB6Ng01-083O14.g
ACCDH898037DH898038
length1,140432
definitionDH898037|Mus musculus domesticus DNA, BAC clone: B6Ng01-083O14, 5' end.DH898038|Mus musculus domesticus DNA, BAC clone: B6Ng01-083O14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,524,007 - 5,525,162)(1,870,346 - 1,870,415)
sequence
gaattcagtgtcacaaacatgagaagaagacattatctccagaaacattt
ctccaacaactaatttgtatttcttaatatactgttataacatgaggaaa
gatgttgaatgctaatgaagcaaaaatgcacttctgtctataaatgttca
tgtatcaatatgcagagaccataaaatttatgtcatgttgttgaccaaca
gagatggagttgcatcatatatacatctccttcataaaggaatttaaagt
aagataagtgtaaaattggtaatctagatcaatgtctacaaattgtcttc
cagacatagctcctgcagtgtcatatagttgttccacatttctttgggaa
aaggactccaaatcagttcaaagacttagataattgaggagacaattgaa
gacaggattgtcaaaattgatcattactccattgtctaatgaagccatct
ccatgctgtcccataataaaaccctgaaaaacaaggaggaaatggctcta
aatatatttttgctttgtcaggttggggttgggactgtggcaaatttcct
tctgttcatccataatttccctgtaattttgactgtcaacccacacccat
acaggacttagtaacaaacttagtggtggccagtgcattcaatctcatcc
tcttggcaattccaaacatcagtacagtatttcttccatggaaggccccc
agtgacctctcatgtaaactttggtacttcgtttgcctggtggctctaag
cacaaacttgtcttccacctgtgtcttgagcacctaccagtttgtcatac
ttcttcctggtaaatggagcagagtcatgctcagaggaagagtctttatc
tatcgtaaatcagataggggactaatatccattgtatataaaggaactca
acaggtggactccagaaaatcaaataaccccattaaaaaatggggctcag
agctaaaaaaagattctcacctgaggataccaatggcagagagcactgaa
aaatgttcagcatccttaatcatcaggaaatgcaaagcaacactctgaga
ttcatctcacaccagtcagcatgctagatcaaaattcaggtgacagcgga
tgctgcaggatgtaaagaaagagaacactcctcattgttg
gaattctttgtttagctctgagccccatttttaaattgtgaaacacatga
aactcaaaaagaacaaagaccaatgtgtggatactttgccccttcttaaa
attcggaagaaaacacccagagaaggaattacagagacacagtttggagc
tgagatgaaaggctggaccatctagagactgccatatccggggatccatc
ccataatctgcttccaaacgcttacactattgaatagactagcaagattt
tgctgaaaggacccagatatagctcttgtgagactatgacagggtctagc
aaacacagaagtggaagctcacagtcagctattggatggatcacagggcc
cccaaaggaggagctagagaaagtacccaaggtgctggggggatctcaac
cctataggtggaacaacaatatgaactaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5524007_5525162
seq2: B6Ng01-083O14.b_44_1183 (reverse)

seq1  CAACAATGGAGGAGTGTTCCTCTTTCTCTACATCCTTGCCAGCATCTGCT  50
      ||||||| |||||||||| |||||||| ||||||||   ||||||| |||
seq2  CAACAAT-GAGGAGTGTT-CTCTTTCTTTACATCCT--GCAGCATCCGCT  46

seq1  GTCACCTGAATTTTTGATCTTAGCCATGCTGACTGGTGTGAGATGGAATC  100
      |||||||||| |||||||| ||| |||||||||||||||||||| |||||
seq2  GTCACCTGAA-TTTTGATC-TAG-CATGCTGACTGGTGTGAGAT-GAATC  92

seq1  TCAGAGTTGTTTGCTTTGCATTTCCCTGATGATTAAGGATGCTGAACATT  150
      |||||||   ||||||||||||| |||||||||||||||||||||||| |
seq2  TCAGAGT--GTTGCTTTGCATTT-CCTGATGATTAAGGATGCTGAACA-T  138

seq1  TTTTCAGGTGCTTCTCTGCCATTTGGTATTCCTCAGGTGAGAATTCTTTT  200
      |||||| |||| ||||||||| |||||| |||||||||||||| ||||||
seq2  TTTTCA-GTGC-TCTCTGCCA-TTGGTA-TCCTCAGGTGAGAA-TCTTTT  183

seq1  TTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTC  233

seq1  CACCTGTTGAGTTCC-TTATATACAATGGATATTAGTCCCCTATCTGATT  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CACCTGTTGAGTTCCTTTATATACAATGGATATTAGTCCCCTATCTGATT  283

seq1  TACGATAGATAAAGACTCTTCCTCTGAGCATGACTCTGCTCCATTTACCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGATAGATAAAGACTCTTCCTCTGAGCATGACTCTGCTCCATTTACCA  333

seq1  GGAAGAAGTATGACAAACTGGTAGGTGCTCAAGACACAGGTGGAAGACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGTATGACAAACTGGTAGGTGCTCAAGACACAGGTGGAAGACAA  383

seq1  GTTTGTGCTTAGAGCCACCAGGCAAACGAAGTACCAAAGTTTACATGAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGCTTAGAGCCACCAGGCAAACGAAGTACCAAAGTTTACATGAGA  433

seq1  GGTCACTGGGGGCCTTCCATGGAAGAAATACTGTACTGATGTTTGGAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTGGGGGCCTTCCATGGAAGAAATACTGTACTGATGTTTGGAATT  483

seq1  GCCAAGAGGATGAGATTGAATGCACTGGCCACCACTAAGTTTGTTACTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAGGATGAGATTGAATGCACTGGCCACCACTAAGTTTGTTACTAA  533

seq1  GTCCTGTATGGGTGTGGGTTGACAGTCAAAATTACAGGGAAATTATGGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTATGGGTGTGGGTTGACAGTCAAAATTACAGGGAAATTATGGAT  583

seq1  GAACAGAAGGAAATTTGCCACAGTCCCAACCCCAACCTGACAAAGCAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAAGGAAATTTGCCACAGTCCCAACCCCAACCTGACAAAGCAAAA  633

seq1  ATATATTTAGAGCCATTTCCTCCTTGTTTTTCAGGGTTTTATTATGGGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTAGAGCCATTTCCTCCTTGTTTTTCAGGGTTTTATTATGGGAC  683

seq1  AGCATGGAGATGGCTTCATTAGACAATGGAGTAATGATCAATTTTGACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGAGATGGCTTCATTAGACAATGGAGTAATGATCAATTTTGACAA  733

seq1  TCCTGTCTTCAATTGTCTCCTCAATTATCTAAGTCTTTGAACTGATTTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTTCAATTGTCTCCTCAATTATCTAAGTCTTTGAACTGATTTGG  783

seq1  AGTCCTTTTCCCAAAGAAATGTGGAACAACTATATGACACTGCAGGAGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTTCCCAAAGAAATGTGGAACAACTATATGACACTGCAGGAGCT  833

seq1  ATGTCTGGAAGACAATTTGTAGACATTGATCTAGATTACCAATTTTACAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGGAAGACAATTTGTAGACATTGATCTAGATTACCAATTTTACAC  883

seq1  TTATCTTACTTTAAATTCCTTTATGAAGGAGATGTATATATGATGCAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTACTTTAAATTCCTTTATGAAGGAGATGTATATATGATGCAACT  933

seq1  CCATCTCTGTTGGTCAACAACATGACATAAATTTTATGGTCTCTGCATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTGTTGGTCAACAACATGACATAAATTTTATGGTCTCTGCATAT  983

seq1  TGATACATGAACATTTATAGACAGAAGTGCATTTTTGCTTCATTAGCATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATGAACATTTATAGACAGAAGTGCATTTTTGCTTCATTAGCATT  1033

seq1  CAACATCTTTCCTCATGTTATAACAGTATATTAAGAAATACAAATTAGTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCTTTCCTCATGTTATAACAGTATATTAAGAAATACAAATTAGTT  1083

seq1  GTTGGAGAAATGTTTCTGGAGATAATGTCTTCTTCTCATGTTTGTGACAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGAAATGTTTCTGGAGATAATGTCTTCTTCTCATGTTTGTGACAC  1133

seq1  TGAATTC  1156
      |||||||
seq2  TGAATTC  1140

seq1: chrY_1870346_1870415
seq2: B6Ng01-083O14.g_432_500

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||| |||   ||||||| ||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGTGCTGGGGGGATCT-CAACCCTATAGGTGGA  49

seq1  ACAACATTATGAACTAACCA  70
      |||||| |||||||||||||
seq2  ACAACAATATGAACTAACCA  69