BAC Information

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BAC

Clone NameB6Ng01-084F20
Chromosome3 (Build37)7 (Build37)
Map Location 41,059,187 - 41,059,73710,568,419 - 10,569,588
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084F20.bB6Ng01-084F20.g
ACCDH898346DH898347
length1,0051,158
definitionDH898346|Mus musculus domesticus DNA, BAC clone: B6Ng01-084F20, 5' end.DH898347|Mus musculus domesticus DNA, BAC clone: B6Ng01-084F20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,187 - 41,059,737)(10,568,419 - 10,569,588)
sequence
gaattctttgtttacctctgagccccattttttaatgggcttatttgatt
ttctggagtccaccttcttgacttttttgtatatattggatattagtccc
ctattggatttaggattagtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgacttgcagaagctttgcaatttta
tgaggtcccatttgtctcgatcttacagcacaagccattgcggttctatt
cagggatttttctcctgtgcccataccttcgaggcttttccccactttct
cctctataagtttcagtgtccctggttttatgtggagttccttaatccac
ttagattttactctagtacaagtagataggaatggatcaattcaaattct
tctacatgataactgccagttgtgccagcaccatttgttgaaaatactgt
cttttttccactggatggttttagctcacttgtcaatgatcaagtgacca
tagctgtgtgggttcttttctgggtcttcagttatattccattggtctac
taatctattgatataccagtaccattcaggtttatcacaattgctctcta
gtacagctttaggtcaggcatggtgattccaccaaaggttcttttatcct
tgagaggagtttttgctatactagagttttttgttattccagatgaattt
gcagattgctctttctaattcgttgaagaattgaattggaattttgatga
ggattgccttgaatctgtagattgcttttggcaagatagccatttttact
atattgatcctgccaatccatgaacattggagatctttccatcttctgac
atctcctttaatttctttcttcagagacttgaagttcttatcatacagat
ctttcacttccttagttagcatcacaccaaggtatttatattatttgtga
ctattgagaaggtgttgtttccctaattttttttctcagcctgttatcct
ttttg
gaattcctcttgtagtttgatattaatagtttataggagcttcttcttat
gtttattcacatgcaaatgtggaatacataatctgtatcagtagttccag
atgttctgattatcgaattgacagtttgaattatattttcaaaaataaag
tattcttagtactaaactgggaataactgtcattcaattgtctatcacta
actcatgcttaactcactactattcatttgaggtatgaagtaggatttca
tggtcttttcacctagctcattttcatatgtctatttttcataatgtgtt
atgaaaattttgttatattatgatggcttagttttgtttaatcttgtttt
attttactattctcccatagaatcctgtcattttctaatgagtgacataa
aatggatttgatgaaaaaggaagaaaatatgaatattaactatgatatat
ttgccaggagaactgacaattgttcacatcccagtagaagaaatggaaac
tgtaattaggatatattatgtgagaataacaagttattttcaataaataa
aacaatcaaaattaaaaacaaattctccctgttctcagagaatgatcttt
ctgttatgtgttgtgttcttttggtaggtgtttttgtcaagaattattcc
acacatattcatcaaatgtattgttcttgaatgacctcttttccctctca
ttaaacattattctgttttcttccattttttaataaaggaaagttctcct
tttgtatatgaatgtgtcttcctacctctgccggcatcttaggaatgtct
taaaaaataaaccagttttgttgtcgtagatttcatttagagaatgttaa
caaaaaagttcaattataactgaaaattatatgttgcttttgtctggttg
ctgttattgctgtacttgaggtgtgtcaatagcctttatttttctgtgtc
tagtgctgtctataggttcctttgatcttctggtcatcttatggaaagag
tgaatggattctcaaatttactaaaaagtcatgtttctatgattatgatt
tctggtatttggttcatagtgaatgtccattattatttggtaaacatttt
tgaattatgaacaggtcattcattatgactattgggggttctaactgata
cattagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059187_41059737
seq2: B6Ng01-084F20.b_49_595 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATG  50
      |||||||||||||| || ||||||| |||||| ||| ||||||| |||||
seq2  AGACCAATGGAATATAACTGAAGACCCAGAAAAGAACCCACACAGCTATG  50

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGAC  100
      ||||||||||| | |||||| |||||||||||||||||||||||||||||
seq2  GTCACTTGATCATTGACAAGTGAGCTAAAACCATCCAGTGGAAAAAAGAC  100

seq1  AGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150
      || ||||||||||||||||||||||||||||||  |||||||||||||||
seq2  AGTATTTTCAACAAATGGTGCTGGCACAACTGGCAGTTATCATGTAGAAG  150

seq1  AATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGT  200
      |||  ||||||||||| |||||||| |||||||||  || ||||||||||
seq2  AATTTGAATTGATCCATTCCTATCTACTTGTACTAGAGTAAAATCTAAGT  200

seq1  GGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250
      |||| ||||||| |||||||||||||| ||||||||||||||||||||||
seq2  GGATTAAGGAACTCCACATAAAACCAGGGACACTGAAACTTATAGAGGAG  250

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCA  300
      ||||||||||||||||| |||| ||||| |||||| ||||||| |||| |
seq2  AAAGTGGGGAAAAGCCTCGAAGGTATGGGCACAGGAGAAAAATCCCTGAA  300

seq1  TAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACC  350
      |||||| |||||||||||||||||||||| |     ||||||||||||||
seq2  TAGAACCGCAATGGCTTGTGCTGTAAGATCG-----AGACAAATGGGACC  345

seq1  TCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400
      |||| ||| ||||||||||||||||| |||||||||||||||||||||||
seq2  TCATAAAATTGCAAAGCTTCTGCAAGTCAAAAGACACCGTCAATAAGACA  395

seq1  AAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  449
      |||||| ||||||||||||||||||||||||||||  ||||||||||  |
seq2  AAAAGGCCACCAACAGATTGGGAAAGGATCTTTACTAATCCTAAATCCAA  445

seq1  TAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCA  499
      ||||||||||||||||||||||||  || || ||||||||||||| ||||
seq2  TAGGGGACTAATATCCAATATATACAAAAAAGTCAAGAAGGTGGACTCCA  495

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAA  549
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  GAAAATCAAATAAGCCCATTAAAAAATGGGGCTCAGAGGTAAACAAAGAA  545

seq1  TT  551
      ||
seq2  TT  547

seq1: chr7_10568419_10569588
seq2: B6Ng01-084F20.g_69_1226

seq1  GAATTCCTCTTGTAGTTTGATATTAATAGTTTATAGGAGCTTCTTCTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTGTAGTTTGATATTAATAGTTTATAGGAGCTTCTTCTTAT  50

seq1  GTTTATTCACATGCAAATGTGGAATACATAATCTGTATCAGTAGTTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCACATGCAAATGTGGAATACATAATCTGTATCAGTAGTTCCAG  100

seq1  ATGTTCTGATTATCGAATTGACAGTTTGAATTATATTTTCAAAAATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGATTATCGAATTGACAGTTTGAATTATATTTTCAAAAATAAAG  150

seq1  TATTCTTAGTACTAAACTGGGAATAACTGTCATTCAATTGTCTATCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTAGTACTAAACTGGGAATAACTGTCATTCAATTGTCTATCACTA  200

seq1  ACTCATGCTTAACTCACTACTATTCATTTGAGGTATGAAGTAGGATTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGCTTAACTCACTACTATTCATTTGAGGTATGAAGTAGGATTTCA  250

seq1  TGGTCTTTTCACCTAGCTCATTTTCATATGTCTATTTTTCATAATGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTTTCACCTAGCTCATTTTCATATGTCTATTTTTCATAATGTGTT  300

seq1  ATGAAAATTTTGTTATATTATGATGGCTTAGTTTTGTTTAATCTTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATTTTGTTATATTATGATGGCTTAGTTTTGTTTAATCTTGTTTT  350

seq1  ATTTTACTATTCTCCCATAGAATCCTGTCATTTTCTAATGAGTGACATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTATTCTCCCATAGAATCCTGTCATTTTCTAATGAGTGACATAA  400

seq1  AATGGATTTGATGAAAAAGGAAGAAAATATGAATATTAACTATGATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATTTGATGAAAAAGGAAGAAAATATGAATATTAACTATGATATAT  450

seq1  TTGCCAGGAGAACTGACAATTGTTCACATCCCAGTAGAAGAAATGGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGGAGAACTGACAATTGTTCACATCCCAGTAGAAGAAATGGAAAC  500

seq1  TGTAATTAGGATATATTATGTGAGAATAACAAGTTATTTTCAATAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTAGGATATATTATGTGAGAATAACAAGTTATTTTCAATAAATAA  550

seq1  AACAATCAAAATTAAAAACAAATTCTCCCTGTTCTCAGAGAATGATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCAAAATTAAAAACAAATTCTCCCTGTTCTCAGAGAATGATCTTT  600

seq1  CTGTTATGTGTTGTGTTCTTTTGGTAGGTGTTTTTGTCAAGAATTATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATGTGTTGTGTTCTTTTGGTAGGTGTTTTTGTCAAGAATTATTCC  650

seq1  ACACATATTCATCAAATGTATTGTTCTTGAATGACCTCTTTTCCCTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATTCATCAAATGTATTGTTCTTGAATGACCTCTTTTCCCTCTCA  700

seq1  TTAAACATTATTCTGTTTTCTTCCATTTTTTAATAAAGGAAAGTTCTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATTATTCTGTTTTCTTCCATTTTTTAATAAAGGAAAGTTCTCCT  750

seq1  TTTGTATATGAATGTGTCTTCCTACCTCTGCCGGCATCTTAGGAATGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATATGAATGTGTCTTCCTACCTCTGCCGGCATCTTAGGAATGTCT  800

seq1  TAAAAAATAAACCAGTTTTGTTGTCGTAGATTTCATTTAGAGAATGTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATAAACCAGTTTTGTTGTCGTAGATTTCATTTAGAGAATGTTAA  850

seq1  CAAAAAAGTTCAATTATAACTGAAAATTATATGTTGCTTTTGTCTGGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGTTCAATTATAACTGAAAATTATATGTTGCTTTTGTCTGGTTG  900

seq1  CTGTTATTGCTGTACTTGAGGTGTGTCAATAGCCTTTATTTTTTCTGTTG  950
      |||||||||||||||||||||||||||||||||||||| |||||||||  
seq2  CTGTTATTGCTGTACTTGAGGTGTGTCAATAGCCTTTA-TTTTTCTGT--  947

seq1  TTCTAGTGCTGTCTATAGGTTCCTTTGATCTTCTGGTCATCTTATGGAAA  1000
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTCTAGTGCTGTCTATAGGTTCCTTTGATCTTCTGGTCATCTTATGG-AA  996

seq1  AGAGTGAATGGATTCTTCAAATTTACTAAAAAGTCATGTTTCTATGAATA  1050
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  AGAGTGAATGGATTC-TCAAATTTACTAAAAAGTCATGTTTCTATGATTA  1045

seq1  TGATTTTCTGTAATTGTGTTCATTAGTGAATGTCCTTTTATTATATGGTA  1100
      ||| ||||||  |||  ||||| ||||||||||||  ||||||| |||||
seq2  TGA-TTTCTGGTATTTGGTTCA-TAGTGAATGTCC-ATTATTATTTGGTA  1092

seq1  AACATTTTTGGATATAATGACAAGGGTCATCAATTATGACTATTGGTGTT  1150
      ||||||||||   || |||| |  ||||||  |||||||||||||| | |
seq2  AACATTTTTG--AATTATGA-ACAGGTCATTCATTATGACTATTGGGGGT  1139

seq1  TCATAACTGTAACATTAGCC  1170
      || ||||||  |||||||||
seq2  TC-TAACTGATACATTAGCC  1158