BAC Information

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BAC

Clone NameB6Ng01-085A02
Chromosome7 (Build37)
Map Location 16,954,721 - 16,955,938
singlet/doubletsinglet
Overlap geneSae1
Upstream geneObox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3
Downstream geneBC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085A02.bB6Ng01-085A02.g
ACCDH898798DH898799
length1,2081,160
definitionDH898798|Mus musculus domesticus DNA, BAC clone: B6Ng01-085A02, 5' end.DH898799|Mus musculus domesticus DNA, BAC clone: B6Ng01-085A02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtagggatgataacaattggttgtgggcattttagcatcctta
tatagtctagatgtctttacattgatggatttacatttcagaaagactcc
aagaattaaggagaactttttttccctaggtatctccagaagaccctgga
gctcagttcttgattcagactgggtctgtgggccgcaatagggccgaggc
ctctttggaacgagcccagaatctcaatcccatggtggatgtaaaggtgg
acactgaggatgtagagaagaagccagagtccttcttcacgaagtttgat
gcggtgagtttcctagtattgagcctgttgggagagtcaagcaggttgaa
gtagtagtggaagttcagtatggagtcatacctctaacctctaaccctag
tgtttgggagccaaaggtgggaaggaggccaggactatgtaacgagatta
actgtaggtgtacaagggctttcaaatcacacactctgaacttttacccc
atctgtgtctataaactgatgtcttctttaggcttgacacattgtatatg
tgtttctgagtaggtccagtctattagacctattgtggttgtttgtgagg
tgcctgctgtcttctgtgtctgggcttctgttatctgagtctaggtttca
gcattagtgtttatcttccttcagaatctttgctcatcatcacttctcgg
tcttttggccaagagcagaatctttgctcttgtgttctggaaatttaagt
tgctgattaattttgttgccagctgcacttattagatagaagtatcaagc
tacagcttatgttttgtgttcaggaaggaagcagcaaacatccctagcca
agcttggtagcatttgcctataatcccgacattaggcaaatggaattagg
aaggaataagagatcaagactgagtttgatgccagtctgggctacataag
gttttgtttttgagacagtttctctgtagctctggccatcctggacttgc
tctatagaccagctgacctttgagatttgcatgttgctgcacttaaggca
tgcaccccccaccctccttgccttttcttaaaaacgaataacttaacagc
ccacacacctgtggcctcagtgttgctggtgcctttcagatattagatga
tgcacgcacacgcatcgaaccatccttggcatggattgtcagtgatacac
caaatgct
gaattctgtgggactgtgataggcagcctattttggttgagtggggcttg
ttccagtgactcagtagagaactctacaagggacagaaaagcaagccacg
ttcccagagacaggtgcctgacaccacagagcccccaactccataattct
gtgactatcagtcacgcagacaatgtcccaagcttctggcattctggcta
gactccacccccacagttacctgactaagccaggtatgctcctccccaca
gttacctgatagcccagcccactatcagaggggctgcttggcccctcctt
gctctctttagccctcaccttttttactctctagccctcctcctctctct
cccttccctctccacgtggccatggccggcctctctctctccttctacct
tctttccttccctctgcctttctacaataaagctctaaaaccatagactg
tctctgctcatcaaggcccgccgtgcttgaacgatgggataggctttccc
ctaaagagccatgtccaacctcccgccggaaggccatcctgtgctccagc
catggagcggaccaaggactctcgcctgcctggaaaccatccagcgcctc
ctctccccctgccctctcctcctgccctctcctccctttggccccagggc
tcagtgctgccccggagcccccattctattctcagctcttccgtggtatc
cagcgtgggatgctggaggctgggaacctggtgcctaggactgccccttg
tccaccaccgccgagtggggtcatttggcttcccacagccagacacccac
ccggggccgcatggaaagcatgcggcactccctcccatgtgcgcctgccc
agagcaccggaacgctggcaggacgcgggttctttcccactctccatctt
tctcccacacccacggcctgcagattcccaaaaaagtgggctctaatgcc
agagaagattggactgctagcaagcaagagtaagcagacaagaccaaagc
agcttcttcttcctgtcttaattagactccagagaaagcgggcccagatc
aaggtgggtttctcaccctaagatccaatcaaagtgggggtctccctctc
aaactaaattcaagaaaggccagggggctgcaaatggcaaatggcgacta
agcacctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_16954721_16955938
seq2: B6Ng01-085A02.b_48_1255 (reverse)

seq1  AGCATTTGGTGTATCACTGACAATTCCATGGCCAAAGTGATTGTTTGTGT  50
      ||||||||||||||||||||||| ||||| |||||   ||| ||| |   
seq2  AGCATTTGGTGTATCACTGACAA-TCCAT-GCCAA--GGATGGTTCG---  43

seq1  GTGTGTGTGTGTGTATATATATATATATATAAAAGGCA-CAGACACACTG  99
       || ||||| ||| ||  || || |||| | ||||||| |||  ||||||
seq2  ATGCGTGTGCGTGCAT-CATCTA-ATATCTGAAAGGCACCAGCAACACTG  91

seq1  AG--CACAGATGTGTTGGCTGTT-AGTTATCTGTTTTTTAAGACAAAGCA  146
      ||  ||||| ||||| ||||||| |||||| |  ||||||||| || |||
seq2  AGGCCACAGGTGTGTGGGCTGTTAAGTTAT-TCGTTTTTAAGAAAAGGCA  140

seq1  AGGAGG--TGGGGGTGCATGCCTTTAAGTGCAGCACCATGCAAATCTCCA  194
      ||||||   ||||||||||||| |||||||||||| ||||||||||| ||
seq2  AGGAGGGTGGGGGGTGCATGCC-TTAAGTGCAGCAACATGCAAATCT-CA  188

seq1  AAGGTCAGCCTGGTCTTATAGAGCAAGTTCCAGGATGGCCAGAGCTACAG  244
      |||||||| |||||| ||||||||||| ||||||||||||||||||||||
seq2  AAGGTCAG-CTGGTC-TATAGAGCAAG-TCCAGGATGGCCAGAGCTACAG  235

seq1  AGAAACTGTCTTCAAAAACAAAACCTTATGTAGCCCAGACTGGCCTCAAA  294
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  AGAAACTGTC-TCAAAAACAAAACCTTATGTAGCCCAGACTGGCATCAAA  284

seq1  CTCAGTCTTGATCTCTTATTCCTTCCTAATTCCATTTGCCTAATGTCGGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCTTGATCTCTTATTCCTTCCTAATTCCATTTGCCTAATGTCGGG  334

seq1  ATTATAGGCAAATGCTACCAAGCTTGGCTAGGGATGTTTGCTGCTTCCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGGCAAATGCTACCAAGCTTGGCTAGGGATGTTTGCTGCTTCCTT  384

seq1  CCTGAACACAAAACATAAGCTGTAGCTTGATACTTCTATCTAATAAGTGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACACAAAACATAAGCTGTAGCTTGATACTTCTATCTAATAAGTGC  434

seq1  AGCTGGCAACAAAATTAATCAGCAACTTAAATTTCCAGAACACAAGAGCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCAACAAAATTAATCAGCAACTTAAATTTCCAGAACACAAGAGCA  484

seq1  AAGATTCTGCTCTTGGCCAAAAGACCGAGAAGTGATGATGAGCAAAGATT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTGCTCTTGGCCAAAAGACCGAGAAGTGATGATGAGCAAAGATT  534

seq1  CTGAAGGAAGATAAACACTAATGCTGAAACCTAGACTCAGATAACAGAAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGAAGATAAACACTAATGCTGAAACCTAGACTCAGATAACAGAAG  584

seq1  CCCAGACACAGAAGACAGCAGGCACCTCACAAACAACCACAATAGGTCTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACACAGAAGACAGCAGGCACCTCACAAACAACCACAATAGGTCTA  634

seq1  ATAGACTGGACCTACTCAGAAACACATATACAATGTGTCAAGCCTAAAGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTGGACCTACTCAGAAACACATATACAATGTGTCAAGCCTAAAGA  684

seq1  AGACATCAGTTTATAGACACAGATGGGGTAAAAGTTCAGAGTGTGTGATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCAGTTTATAGACACAGATGGGGTAAAAGTTCAGAGTGTGTGATT  734

seq1  TGAAAGCCCTTGTACACCTACAGTTAATCTCGTTACATAGTCCTGGCCTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCCCTTGTACACCTACAGTTAATCTCGTTACATAGTCCTGGCCTC  784

seq1  CTTCCCACCTTTGGCTCCCAAACACTAGGGTTAGAGGTTAGAGGTATGAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACCTTTGGCTCCCAAACACTAGGGTTAGAGGTTAGAGGTATGAC  834

seq1  TCCATACTGAACTTCCACTACTACTTCAACCTGCTTGACTCTCCCAACAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACTGAACTTCCACTACTACTTCAACCTGCTTGACTCTCCCAACAG  884

seq1  GCTCAATACTAGGAAACTCACCGCATCAAACTTCGTGAAGAAGGACTCTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATACTAGGAAACTCACCGCATCAAACTTCGTGAAGAAGGACTCTG  934

seq1  GCTTCTTCTCTACATCCTCAGTGTCCACCTTTACATCCACCATGGGATTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTCTCTACATCCTCAGTGTCCACCTTTACATCCACCATGGGATTG  984

seq1  AGATTCTGGGCTCGTTCCAAAGAGGCCTCGGCCCTATTGCGGCCCACAGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTGGGCTCGTTCCAAAGAGGCCTCGGCCCTATTGCGGCCCACAGA  1034

seq1  CCCAGTCTGAATCAAGAACTGAGCTCCAGGGTCTTCTGGAGATACCTAGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCTGAATCAAGAACTGAGCTCCAGGGTCTTCTGGAGATACCTAGG  1084

seq1  GAAAAAAAGTTCTCCTTAATTCTTGGAGTCTTTCTGAAATGTAAATCCAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAGTTCTCCTTAATTCTTGGAGTCTTTCTGAAATGTAAATCCAT  1134

seq1  CAATGTAAAGACATCTAGACTATATAAGGATGCTAAAATGCCCACAACCA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAAAGACATCTAGACTATATAAGGATGCTAAAATGCCCACAACCA  1184

seq1  ATTGTTATCATCCCTACAGAATTC  1218
      ||||||||||||||||||||||||
seq2  ATTGTTATCATCCCTACAGAATTC  1208