BAC Information

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BAC

Clone NameB6Ng01-085J13
Chromosome7 (Build37)
Map Location 127,217,445 - 127,334,126
singlet/doubletdoublet
Overlap geneDnahc3, Tmem159, Zp2, Anks4b, Crym
Upstream geneGpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1
Downstream geneAbca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085J13.bB6Ng01-085J13.g
ACCDH899230DH899231
length349984
definitionDH899230|Mus musculus domesticus DNA, BAC clone: B6Ng01-085J13, 5' end.DH899231|Mus musculus domesticus DNA, BAC clone: B6Ng01-085J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,217,445 - 127,217,793)(127,333,143 - 127,334,126)
sequence
ttctgggctcccaaaggaggtgggtttctgtgtttaattgttcaccattt
gatctgtttggtactcatcactcttgaaattaaatgacgattcaataagc
tattctaggtgaccctgaaagtataaatactataatggaataatttatgt
gtaaatgcttatctgtgttcatttgtgtgtgtatgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgcaggtacatgttgaagccagaggtcaaccttgggt
gttattcctcaggagccatctacctcattttttggcacattgttccttac
tgggaactggctgtctattaagctaagaatggttggctagcaaacctaa
gaattccccggcctcagagtctattttgttatcttgtagctgttggagcc
agcaggcctgactggcgagaactggatgacgagctcatgaggcaagcggt
gctgtatgtggactcccgggaggctgccctgaaggagtcaggagacgttc
tgttgtcaggggtgagcctctctcaacagcggaaccactggctggccctg
gcttggttcccagggtttcactgccttcccctctggaccttggtcacctc
accacctagtaaggaagacattcccaaacatcttgtagcattttaaatcc
cattccagaaaaacatagccatatggctataacatgtgtcttcctgtcct
tctgcctggagggagaactaactttttttttttttttctggtttgctgtg
ctataaagcagtaagatgggaagtctgttgttgcaacctggaaaccttaa
gaagactatgtatcccttggctgcctattcccacttataatcaggttatg
aaagcaagcagaaactgccaaaatgcatggtcagataatagcataccaac
ttcttcacagacagggacctggcaggaagccacccagacacaaagatctc
tgtgtttatggtgtcaaaacaccggtgctgaccccaagggttaccagagg
gcatcttcttaatatcttctagttcacacgtgttttttttttttttaatc
atttttatttctctcttgttcaggggtgtcctatactggcttcagaagcc
agccctgcacgggatgatggtttcagcactacttagcatgcatttgtttc
acaggctgacatctttgctgagcttggagaagtgatttcaggagcgaagc
ctgcacactgtgagaagaccacagtgttcaaatcttttgggtaggactca
tgaattgttccctgggcacaattcaaccaaagcacatttttgcaggtaag
gagaaatggtatgtttaccagctctggcggctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_127217445_127217793
seq2: B6Ng01-085J13.b_54_402

seq1  TTCTGGGCTCCCAAAGGAGGTGGGTTTCTGTGTTTAATTGTTCACCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCTCCCAAAGGAGGTGGGTTTCTGTGTTTAATTGTTCACCATTT  50

seq1  GATCTGTTTGGTACTCATCACTCTTGAAATTAAATGACGATTCAATAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTTTGGTACTCATCACTCTTGAAATTAAATGACGATTCAATAAGC  100

seq1  TATTCTAGGTGACCCTGAAAGTATAAATACTATAATGGAATAATTTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGGTGACCCTGAAAGTATAAATACTATAATGGAATAATTTATGT  150

seq1  GTAAATGCTTATCTGTGTTCATTTGTGTGTGTATGTGTGTGTGTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGCTTATCTGTGTTCATTTGTGTGTGTATGTGTGTGTGTGTGTGT  200

seq1  GTGTGTGTGTGTGTGCAGGTACATGTTGAAGCCAGAGGTCAACCTTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGCAGGTACATGTTGAAGCCAGAGGTCAACCTTGGGT  250

seq1  GTTATTCCTCAGGAGCCATCTACCTCATTTTTTGGCACAAGGTTCCTTAC  300
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  GTTATTCCTCAGGAGCCATCTACCTCATTTTTTGGCACATTGTTCCTTAC  300

seq1  TGGGACCTGGCTGTCTATTAGGCTAAGAATGGCTGGCTAGCAAACCCAA  349
      ||||| |||||||||||||| ||||||||||| ||||||||||||| ||
seq2  TGGGAACTGGCTGTCTATTAAGCTAAGAATGGTTGGCTAGCAAACCTAA  349

seq1: chr7_127333143_127334126
seq2: B6Ng01-085J13.g_73_1056 (reverse)

seq1  TCAGCCG-CAGAGCCTGGTAAACCATCCATTTCTCCTTTCCCTGCCATAC  49
      ||||||| ||||| |||||||||   |||||||||| || |||| || | 
seq2  TCAGCCGCCAGAG-CTGGTAAACATACCATTTCTCC-TTACCTG-CAAAA  47

seq1  ATGTGCTTTGGTTGGATTTGTGCCCAGGGAACAATTCATGAGTCTTACCC  99
      ||||||||||||| || ||||||||||||||||||||||||||| |||||
seq2  ATGTGCTTTGGTT-GAATTGTGCCCAGGGAACAATTCATGAGTCCTACCC  96

seq1  -AAAGATTTGAACACTGTGGTCTTCTCACAGTGTGCAGGCTTCGCTCCTG  148
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTTGAACACTGTGGTCTTCTCACAGTGTGCAGGCTTCGCTCCTG  146

seq1  AAATCACTTCTCCAAGCTCAGCAAAGATGTCAGCCTGTGAAACAAATGCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTTCTCCAAGCTCAGCAAAGATGTCAGCCTGTGAAACAAATGCA  196

seq1  TGCTAAGTAGTGCTGAAACCATCATCCCGTGCAGGGCTGGCTTCTGAAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGTAGTGCTGAAACCATCATCCCGTGCAGGGCTGGCTTCTGAAGC  246

seq1  CAGTATAGGACACCCCTGAACAAGAGAG-AATAAAAATGATT-AAAAAAA  296
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  CAGTATAGGACACCCCTGAACAAGAGAGAAATAAAAATGATTAAAAAAAA  296

seq1  AAAAAACACGTGTGAACTAGAAGATATTAAGAAGATGCCCTCTGGTAACC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACACGTGTGAACTAGAAGATATTAAGAAGATGCCCTCTGGTAACC  346

seq1  CTTGGGGTCAGCACCGGTGTTTTGACACCATAAACACAGAGATCTTTGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGTCAGCACCGGTGTTTTGACACCATAAACACAGAGATCTTTGTG  396

seq1  TCTGGGTGGCTTCCTGCCAGGTCCCTGTCTGTGAAGAAGTTGGTATGCTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTGGCTTCCTGCCAGGTCCCTGTCTGTGAAGAAGTTGGTATGCTA  446

seq1  TTATCTGACCATGCATTTTGGCAGTTTCTGCTTGCTTTCATAACCTGATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGACCATGCATTTTGGCAGTTTCTGCTTGCTTTCATAACCTGATT  496

seq1  ATAAGTGGGAATAGGCAGCCAAGGGATACATAGTCTTCTTAAGGTTTCCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGGGAATAGGCAGCCAAGGGATACATAGTCTTCTTAAGGTTTCCA  546

seq1  GGTTGCAACAACAGACTTCCCATCTTACTGCTTTATAGCACAGCAAACCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAACAACAGACTTCCCATCTTACTGCTTTATAGCACAGCAAACCA  596

seq1  GAAAAAAAAAAAAAAAGTTAGTTCTCCCTCCAGGCAGAAGGACAGGAAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAAAAAAGTTAGTTCTCCCTCCAGGCAGAAGGACAGGAAGA  646

seq1  CACATGTTATAGCCATATGGCTATGTTTTTCTGGAATGGGATTTAAAATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTTATAGCCATATGGCTATGTTTTTCTGGAATGGGATTTAAAATG  696

seq1  CTACAAGATGTTTGGGAATGTCTTCCTTACTAGGTGGTGAGGTGACCAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGATGTTTGGGAATGTCTTCCTTACTAGGTGGTGAGGTGACCAAG  746

seq1  GTCCAGAGGGGAAGGCAGTGAAACCCTGGGAACCAAGCCAGGGCCAGCCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAGGGGAAGGCAGTGAAACCCTGGGAACCAAGCCAGGGCCAGCCA  796

seq1  GTGGTTCCGCTGTTGAGAGAGGCTCACCCCTGACAACAGAACGTCTCCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCCGCTGTTGAGAGAGGCTCACCCCTGACAACAGAACGTCTCCTG  846

seq1  ACTCCTTCAGGGCAGCCTCCCGGGAGTCCACATACAGCACCGCTTGCCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCAGGGCAGCCTCCCGGGAGTCCACATACAGCACCGCTTGCCTC  896

seq1  ATGAGCTCGTCATCCAGTTCTCGCCAGTCAGGCCTGCTGGCTCCAACAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTCGTCATCCAGTTCTCGCCAGTCAGGCCTGCTGGCTCCAACAGC  946

seq1  TACAAGATAACAAAATAGACTCTGAGGCCGGGGAATTC  984
      ||||||||||||||||||||||||||||||||||||||
seq2  TACAAGATAACAAAATAGACTCTGAGGCCGGGGAATTC  984