BAC Information

Click to search

BAC

Clone NameB6Ng01-087G02
Chromosome7 (Build37)
Map Location 26,343,895 - 26,516,589
singlet/doubletdoublet
Overlap geneLOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1
Upstream geneXrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2
Downstream geneAxl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087G02.bB6Ng01-087G02.g
ACCDH900520DH900521
length7971,236
definitionDH900520|Mus musculus domesticus DNA, BAC clone: B6Ng01-087G02, 5' end.DH900521|Mus musculus domesticus DNA, BAC clone: B6Ng01-087G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,343,895 - 26,344,691)(26,515,366 - 26,516,589)
sequence
gaattctgacagagaaggaagaggagggacggtggtagctactgatagtt
gctccccagtgcccttcttttttaactttcctaattactcctcaacttgt
caaattctttcatttatatatttaccattcctacttctgggaataagaac
aatataaatgtgcttagctaaaaatttttctaacatctgttattttgatt
ttgtagttttgtcttttactctttttatttgttttattttattttaaacc
ctattcctcccacctggagcagctcttggctgtgaacaaattttcttaat
ctgtattcctcctgtcttgagagattccgttaaaaagaattcaggtttac
ttaatgcatgttccatagtctagccactcttcctacctttctctgatcag
tctcacactgtgggtgacactgaggcgatccagtgcggggcttcactcac
ttcctgatgaagcggcggttcagtgcagaccttcactcacctcttgacga
agcgacaacccaaggaaaagagtgctctctctcagaccccaaacccagag
ccataagctgggcgccagtttgccctgacctgcaggtataatcagcagga
acctagggcaagggagtgagatagtggggggggaagagacaggaagaatg
agagcaagaatcatactgattaagctctaaaaactttattcggtagaggc
aatataagcataagcaaaaggaggctccaagggaggggggaagagccgag
agatctctgaaggtcaggtgacaatcttcaagtcctggtaaccaacg
gaattccctgcctgacctttactcacattgctgcccaaattagcccaaca
gtggaagtcacggtgagagcatgccatgtgccatttctgtcctgcagttc
aggcaggcacaaagtagaactaatgcagccttcttagctgctacatcctt
gtttggagctggagttaggcctaagtcgcacagatcgcctgtggtctcca
gcctgctgacctcgcagaagggatgcagatcaggccatatgatccaaacc
aaccataatgcaaaggctcctgccctccaaagtaaagaacacagtcctct
agttaacccaaggctagagccaggggctgaagctctaggtcagtgaggcc
aataaagaggttttaagccagtggcttttctttttttttttttttttttt
ttttggttttttgagacagggtttctctgtgtagccctggctatcctgga
actcactttgtagaccaggctggcctcgaactcagaaatccgcctgcctc
tgcctcccaagtgctgggattaaaggcatgcgccaccacgcccggcggct
tttcttgttttagccaaaactccaaaaagtttgttccagaaaatttaatt
atgaaaaatttgttgtatgaatgaatgtaggcaaaggtttggagcacatc
ttgacacgaccattagccgtggttgtgaggattactttgataatgcgtag
ctgtctcgtgggcagggtagatctttgaaagagactagcactgcatgctg
tgttcccatagtcccagaatctcagcccaggtcatattccctgtagttag
ctcttctgtacctattatgtggtcaccctcagaacatacctgtcctttgg
aggataattcatctcttccacccctgctgaagctgggcagcccagattct
acctttgccaagcccctagccaggcaacccctagatgaggttctagcctg
tcttaggctatcatagggatccaaacagggggttcaccaggaacctgtgt
ggtttctagagaccacaaaagttggcccaaccatctggagcttggaggtt
atatctataggccagtagagcatgggtcagtcagttgggctgcataccac
tttggcttactttggctcacacactcaaagcttggtttcactctgagcag
gagtgggtcagcatgatgaccgcacctaaggagacacagatgtagctgag
tttccgtgcgcgccagagctatgtgtgagaaccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_26343895_26344691
seq2: B6Ng01-087G02.b_44_840

seq1  GAATTCTGACAGAGAAGGAAGAGGAGGGACGGTGGTAGCTACTGATAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACAGAGAAGGAAGAGGAGGGACGGTGGTAGCTACTGATAGTT  50

seq1  GCTCCCCAGTGCCCTTCTTTTTTAACTTTCCTAATTACTCCTCAACTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCAGTGCCCTTCTTTTTTAACTTTCCTAATTACTCCTCAACTTGT  100

seq1  CAAATTCTTTCATTTATATATTTACCATTCCTACTTCTGGGAATAAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTTTCATTTATATATTTACCATTCCTACTTCTGGGAATAAGAAC  150

seq1  AATATAAATGTGCTTAGCTAAAAATTTTTCTAACATCTGTTATTTTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAATGTGCTTAGCTAAAAATTTTTCTAACATCTGTTATTTTGATT  200

seq1  TTGTAGTTTTGTCTTTTACTCTTTTTATTTGTTTTATTTTATTTTAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTTTTGTCTTTTACTCTTTTTATTTGTTTTATTTTATTTTAAACC  250

seq1  CTATTCCTCCCACCTGGAGCAGCTCTTGGCTGTGAACAAATTTTCTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTCCCACCTGGAGCAGCTCTTGGCTGTGAACAAATTTTCTTAAT  300

seq1  CTGTATTCCTCCTGTCTTGAGAGATTCCGTTAAAAAGAATTCAGGTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTCCTCCTGTCTTGAGAGATTCCGTTAAAAAGAATTCAGGTTTAC  350

seq1  TTAATGCATGTTCCATAGTCTAGCCACTCTTCCTACCTTTCTCTGATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCATGTTCCATAGTCTAGCCACTCTTCCTACCTTTCTCTGATCAG  400

seq1  TCTCACACTGTGGGTGACACTGAGGCGATCCAGTGCGGGGCTTCACTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACACTGTGGGTGACACTGAGGCGATCCAGTGCGGGGCTTCACTCAC  450

seq1  TTCCTGATGAAGCGGCGGTTCAGTGCAGACCTTCACTCACCTCTTGACGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATGAAGCGGCGGTTCAGTGCAGACCTTCACTCACCTCTTGACGA  500

seq1  AGCGACAACCCAAGGAAAAGAGTGCTCTCTCTCAGACCCCAAACCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGACAACCCAAGGAAAAGAGTGCTCTCTCTCAGACCCCAAACCCAGAG  550

seq1  CCATAAGCTGGGCGCCAGTTTGCCCTGACCTGCAGGTATAATCAGCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGCTGGGCGCCAGTTTGCCCTGACCTGCAGGTATAATCAGCAGGA  600

seq1  ACCTAGGGCAAGGGAGTGAGATAGTGGGGGGGGAAGAGACAGGAAGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGGCAAGGGAGTGAGATAGTGGGGGGGGAAGAGACAGGAAGAATG  650

seq1  AGAGCAAGAATCATACTGATTAAGCTCTAAAAACTTTATTCGGTAGAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAGAATCATACTGATTAAGCTCTAAAAACTTTATTCGGTAGAGGC  700

seq1  AATATAAGCATAAGCAAAAGGAGGCTCCAAGGGAGGGGGGAAGAGCCCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATATAAGCATAAGCAAAAGGAGGCTCCAAGGGAGGGGGGAAGAG-CCGA  749

seq1  GGGATCTCTGAAGGTCAGGTGACAATCTTCAGGTCCTGG-AACCAACG  797
      | ||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  GAGATCTCTGAAGGTCAGGTGACAATCTTCAAGTCCTGGTAACCAACG  797

seq1: chr7_26515366_26516589
seq2: B6Ng01-087G02.g_68_1303 (reverse)

seq1  CAGGG---TCTCACATAGCTCTGGCTGGC-CTGGAACTCAGCTTACTTC-  45
      |||||   || ||||||||||||||  || | | |||||||| ||| || 
seq2  CAGGGTTCTCACACATAGCTCTGGCGCGCACGGAAACTCAGC-TACATCT  49

seq1  -TGTCTCCTTA-GTGCTGTCATCATGGCATGCACCA-TCATGCTCAGTTA  92
       |||||||||| |||| |||||||||   ||  ||| || |||||||   
seq2  GTGTCTCCTTAGGTGCGGTCATCATG--CTGACCCACTCCTGCTCAGAGT  97

seq1  GAACCAAAGCTTTGA--GTGTGAGGCCAAGTAAG-CAAAGTTGTATGCAG  139
      ||| | |||||||||  ||||||| | ||||||| |||||| ||||||||
seq2  GAAACCAAGCTTTGAGTGTGTGAGCCAAAGTAAGCCAAAGTGGTATGCAG  147

seq1  -CCAACTGACTGACCAATGCTCTTCCTGGCCTATAGACTATAACCTCC-A  187
       |||||||||||||| |||||| | |||||||||||| |||||||||| |
seq2  CCCAACTGACTGACCCATGCTC-TACTGGCCTATAGA-TATAACCTCCAA  195

seq1  GCTCCAGATGGTTTGGGCAAC-TTTGTTGTCTCTTAGAA--CACACA-GT  233
      ||||||||||||| || |||| ||||| ||||| |||||  |||||| ||
seq2  GCTCCAGATGGTTGGGCCAACTTTTGTGGTCTC-TAGAAACCACACAGGT  244

seq1  TCCTGTTGAACACCCTGTTTCGAATCCCTATGATAGCCTAAAGACAGGCT  283
      ||||| ||||| |||||||| | |||||||||||||||| ||||||||||
seq2  TCCTGGTGAACCCCCTGTTT-GGATCCCTATGATAGCCT-AAGACAGGCT  292

seq1  AGAAACCTCATCCTAGGGTTGCCTGGCTAGGGGCTTGGCAAAGGTAGAAT  333
      || |||||||||   |||||||||||||||||||||||||||||||||||
seq2  AG-AACCTCATCTAGGGGTTGCCTGGCTAGGGGCTTGGCAAAGGTAGAAT  341

seq1  CTTGGCTGCCCAGCCTCAGCA-GGGTTGTAGAGATGAATTATCTTCC-AA  381
      || ||||||||||| |||||| |||| | |||||||||||||| ||| ||
seq2  CTGGGCTGCCCAGCTTCAGCAGGGGTGGAAGAGATGAATTATCCTCCAAA  391

seq1  GGACAGGTATG-TCTGAGGTTGA-CACATAATAGGTACAGAAGAGCTAAC  429
      ||||||||||| ||||||| ||| ||||||||||||||||||||||||||
seq2  GGACAGGTATGTTCTGAGGGTGACCACATAATAGGTACAGAAGAGCTAAC  441

seq1  TACAGGGAATATGACCTGGGCTGAGATTCTGCGACTATGGGAACACAGCA  479
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TACAGGGAATATGACCTGGGCTGAGATTCTGGGACTATGGGAACACAGCA  491

seq1  TGCAGTGCTAGTCTCTTTCAAAGATCTACCCTGCCCACGAGACAGCTACG  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGCTAGTCTCTTTCAAAGATCTACCCTGCCCACGAGACAGCTACG  541

seq1  CATTATCAAAGTAATCCTCACAACCACGGCTAATGGTCGTGTCAAGATGT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCAAAGTAATCCTCACAACCACGGCTAATGGTCGTGTCAAGATGT  591

seq1  GCTCCAAACCTTTGCCTACATTCATTCATACAACAAATTTTTCATAATTA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAACCTTTGCCTACATTCATTCATACAACAAATTTTTCATAATTA  641

seq1  AATTTTCTGGAACAAACTTTTTGGAGTTTTGGCTAAAACAAGAAAAGCCG  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTGGAACAAACTTTTTGGAGTTTTGGCTAAAACAAGAAAAGCCG  691

seq1  CCGGGCGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGC  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGC  741

seq1  AGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAG  791

seq1  GATAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAA  841

seq1  AAAAAAAAAAAAAAAGAAAAGCCACTGGCTTAAAACCTCTTTATTGGCCT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGAAAAGCCACTGGCTTAAAACCTCTTTATTGGCCT  891

seq1  CACTGACCTAGAGCTTCAGCCCCTGGCTCTAGCCTTGGGTTAACTAGAGG  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACCTAGAGCTTCAGCCCCTGGCTCTAGCCTTGGGTTAACTAGAGG  941

seq1  ACTGTGTTCTTTACTTTGGAGGGCAGGAGCCTTTGCATTATGGTTGGTTT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTCTTTACTTTGGAGGGCAGGAGCCTTTGCATTATGGTTGGTTT  991

seq1  GGATCATATGGCCTGATCTGCATCCCTTCTGCGAGGTCAGCAGGCTGGAG  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATATGGCCTGATCTGCATCCCTTCTGCGAGGTCAGCAGGCTGGAG  1041

seq1  ACCACAGGCGATCTGTGCGACTTAGGCCTAACTCCAGCTCCAAACAAGGA  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGGCGATCTGTGCGACTTAGGCCTAACTCCAGCTCCAAACAAGGA  1091

seq1  TGTAGCAGCTAAGAAGGCTGCATTAGTTCTACTTTGTGCCTGCCTGAACT  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGCTAAGAAGGCTGCATTAGTTCTACTTTGTGCCTGCCTGAACT  1141

seq1  GCAGGACAGAAATGGCACATGGCATGCTCTCACCGTGACTTCCACTGTTG  1179
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACAGAAATGGCACATGGCATGCTCTCACCGTGACTTCCACTGTTG  1191

seq1  GGCTAATTTGGGCAGCAATGTGAGTAAAGGTCAGGCAGGGAATTC  1224
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATTTGGGCAGCAATGTGAGTAAAGGTCAGGCAGGGAATTC  1236