BAC Information

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BAC

Clone NameB6Ng01-088D12
Chromosome7 (Build37)
Map Location 134,956,265 - 134,956,997
singlet/doubletsinglet
Overlap geneStx1b2
Upstream gene1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7
Downstream geneStx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088D12.bB6Ng01-088D12.g
ACCDH901136DH901137
length156733
definitionDH901136|Mus musculus domesticus DNA, BAC clone: B6Ng01-088D12, 5' end.DH901137|Mus musculus domesticus DNA, BAC clone: B6Ng01-088D12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ttatatacagttttgggggtgggtaagggtctgacaacaggtatttctca
ttggtttggtctgagagctttggggaaatctatttgcatgtgggagggct
tggtgctgctcctacttgactgatggctacacacctctctggaggggggg
ggggag
gaattcaaggtcaccctgatgccaccaactggaggaagatggaaaagatg
gagtgtgtgtttgtttgttttggggtttttgggggattttgttttgtctt
tttcctggtcagtttcctaaaccaccttctctttttctgtcttctatctg
gacttctgaacccccgaccacaaagttttcctcatggtcttctaaaaagt
gttctacatcaaggccaatgggtctgaagaaaccaaggagtcctgagcct
gtgacctgccagcccatctcacccttccaagtgctgaaggtacaggagca
accactatgcctgacttatggcatttgatatgagaatatcgccttataac
tctggctgggttgaaactcactatgtagacgaggctggccttgaactcac
aaagattctcctgcctctggctccctagcactgggactaacggtgtatac
caccagcctgtcaacttttatgatttatatttgagatttgaaaaaaaaaa
tatgtgtattgcgttttgcctgcatgtatgtctattgggaaggtgtcgga
ttccctggaactaggacttcagatacttgtgaccctccatgtagaattga
acctgggtcctcgggaagccagtgatcttaaccacttagctatctctcta
gcccctatatttgagattcttggtaagacatcatctggaaaaaaaaataa
aaaacaagcgggcgtggtggtgctcgcctttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_134956265_134956997
seq2: B6Ng01-088D12.g_71_803

seq1  GAATTCAAGGTCACCCTGATGCCACCAACTGGAGGAAGATGGAAAAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCACCCTGATGCCACCAACTGGAGGAAGATGGAAAAGATG  50

seq1  GAGTGTGTGTTTGTTTGTTTTGGGGTTTTTGGGGGATTTTGTTTTGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTGTTTGTTTGTTTTGGGGTTTTTGGGGGATTTTGTTTTGTCTT  100

seq1  TTTCCTGGTCAGTTTCCTAAACCACCTTCTCTTTTTCTGTCTTCTATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGTCAGTTTCCTAAACCACCTTCTCTTTTTCTGTCTTCTATCTG  150

seq1  GACTTCTGAACCCCCGACCACAAAGTTTTCCTCATGGTCTTCTAAAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGAACCCCCGACCACAAAGTTTTCCTCATGGTCTTCTAAAAAGT  200

seq1  GTTCTACATCAAGGCCAATGGGTCTGAAGAAACCAAGGAGTCCTGAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACATCAAGGCCAATGGGTCTGAAGAAACCAAGGAGTCCTGAGCCT  250

seq1  GTGACCTGCCAGCCCATCTCACCCTTCCAAGTGCTGAAGGTACAGGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTGCCAGCCCATCTCACCCTTCCAAGTGCTGAAGGTACAGGAGCA  300

seq1  ACCACTATGCCTGACTTATGGCATTTGATATGAGAATATCGCCTTATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTATGCCTGACTTATGGCATTTGATATGAGAATATCGCCTTATAAC  350

seq1  TCTGGCTGGGTTGAAACTCACTATGTAGACGAGGCTGGCCTTGAACTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGGGTTGAAACTCACTATGTAGACGAGGCTGGCCTTGAACTCAC  400

seq1  AAAGATTCTCCTGCCTCTGGCTCCCTAGCACTGGGACTAACGGTGTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCTCCTGCCTCTGGCTCCCTAGCACTGGGACTAACGGTGTATAC  450

seq1  CACCAGCCTGTCAACTTTTATGATTTATATTTGAGATTTGAAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCTGTCAACTTTTATGATTTATATTTGAGATTTGAAAAAAAAAA  500

seq1  TATGTGTATTGCGTTTTGCCTGCATGTATGTCTATTGGGAAGGTGTCGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATTGCGTTTTGCCTGCATGTATGTCTATTGGGAAGGTGTCGGA  550

seq1  TTCCCTGGAACTAGGACTTCAGATACTTGTGACCCTCCATGTAGAATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGAACTAGGACTTCAGATACTTGTGACCCTCCATGTAGAATTGA  600

seq1  ACCTGGGTCCTCGGGAAGCCAGTGATCTTAACCACTAAGCTATCTCTCTA  650
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACCTGGGTCCTCGGGAAGCCAGTGATCTTAACCACTTAGCTATCTCTCTA  650

seq1  GCCCCTATATTTGAGATTCTTGGTAAGACATCATCTGGAAAAAAAAA-AA  699
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCCCCTATATTTGAGATTCTTGGTAAGACATCATCTGGAAAAAAAAATAA  700

seq1  AAAACAAGCCGGGCGTGGTGGCGCACGCCTTTAA  733
      |||||||| |||||||||||| || |||||||||
seq2  AAAACAAG-CGGGCGTGGTGGTGCTCGCCTTTAA  733