BAC Information

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BAC

Clone NameB6Ng01-089A12
Chromosome11 (Build37)7 (Build37)
Map Location 26,355,541 - 26,355,7337,013,708 - 7,014,803
singlet/doubletsingletsinglet
Overlap geneFancl
Upstream gene5730522E02Rik, LOC100042328, LOC100042345
Downstream geneVrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089A12.bB6Ng01-089A12.g
ACCDH901723DH901724
length8281,089
definitionDH901723|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A12, 5' end.DH901724|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,355,541 - 26,355,733)(7,013,708 - 7,014,803)
sequence
gaattcacatgatatgcactcactgataagtggatattagcccagaagcc
cagaatacccaagatacaatttgcaaaacacaagaaaatcaagaagaagg
aagaccaaagtgtggatacttcttccctccttagaatagggaacaaaata
tccatgaaaggagttacagagacaaagtttggcactgagacagaaggatg
gaccatgcagagacctccccatcctgggatccataccataatcaaccacc
aaacacagacactattgcatatgccagcaagattttgctgaaaggatgga
ccctgatatagctgtctcttgtgaggctatgccagtgcctggcaaataca
gaagtggatactcacagtcatctattggatggaacacaggaccccaaatg
gtggagctagagaaaggagctgaatggatctataactctataggaggaac
agcaacatgaactaaccattaccccctgggctcttgtctctagctgcata
tgtagcaaaagatggcctaatcagccattattgggaggagaggcgcttgg
tcttgcacacattatatgctccaatacaggggaatgccagggcaaggaag
caggagtggatgagttggggagcaggacaggagtggggtgggtataaggg
actttcaggatagcatttaaattgcaaatgaagaaaatatctaataaaaa
tgtttaaataataatatttttttaaaaagggttacagtgtagatgcaaac
caatcatagttagaagttaggccttttacatcaaagaacaagagttgaag
ccacagttgttaagacagacatagatga
gaattcacaatggcctagcaaataggtgggtttaccatgaaagagttagg
gaatccccctgaggcaggtttcttcactaggcccaaagaaacagcataat
caggcatttactaagaacccctggtggtgggtttaacaatagactagcat
tacatctggctccattcttagtggtaaacagcagcggcctggtccctgcc
atcttttgatgtatacattccttatgttttgtgtcactgtaactcggcgg
atgtatctcgcctggtttcttgttattcttctgtataaaaagtttgatgc
tcgacttgacaaagtacattcagattctacacaatctcatgtgtcacttc
tgttcgtcattcattcgatggctccttgtccacctgcaactagagacccg
ttctacgcagacagagaccaaaaagggtctgtagcaaatcaacagcactc
ccatagtttactgtttgatctacactgatagtaacctcataggaagctgt
ctcatggaaatccacggaggttaactgtagtctcccctcccccagcctga
aacctgcttgctcaggggtggagcttcccgctcaatcgttctgccatgcc
cactgctggaacctgccgctttgctgcttggagccacacacgtgttcacc
ctgctactggaccccgagaccagttggcgggaatcgggttccctccccct
tcctttataactgaatgtcggaactagtaaaattgagctttgaacaggat
gaacttgtcttggctccgtttcttctttcccccgtctagttcctccctta
gctcgagtggccatctcagtcgaaccattcacgttcatgttcacgttgcg
agctgctggccggctgcaacagttaacaatgtgtcatgcacattgagggt
cttcatgcttcccttgttcttgtacttgcatacacagagggttttgtcat
agcacactcaaaattaactccctctgaccctgatcagaactccaagtccc
ttaattatcatggccacaagagtcataaggcacatgcagtactgacatcc
acatctaatagtttgtctctggaaccgaatgccaagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26355541_26355733
seq2: B6Ng01-089A12.b_49_345 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  GTCCATCCTTTCAGCAAAATCTTGCTGGCATATGCAATAGTGTCTGTGTT  50

seq1  ------------------------------------------------GT  2
                                                      ||
seq2  TGGTGGTTGATTATGGTATGGATCCCAGGATGGGGAGGTCTCTGCATGGT  100

seq1  CCATCCTTTCGTCTTAGCTCCAAACTT------TGTAACTCCTTCCATGG  46
      ||||||||  |||| ||  ||||||||      ||||||||||| |||||
seq2  CCATCCTTCTGTCTCAGTGCCAAACTTTGTCTCTGTAACTCCTTTCATGG  150

seq1  GTATTTTATGTCCTATTCTAGGGAGGAATGAAGTATCCACGCATTGGTCT  96
       |||||| |  ||||||||| ||||| | ||||||||||| | |||||||
seq2  ATATTTTGTTCCCTATTCTAAGGAGGGAAGAAGTATCCACACTTTGGTCT  200

seq1  TCCTTCTTCTTGAGTTTCTTGTGTTTTGCAAATTGTATCTTGGGTATTCT  146
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTCTTGATTTTCTTGTGTTTTGCAAATTGTATCTTGGGTATTCT  250

seq1  AGGTTTCTGGGCTAATATCCACTTATCAGTGAGTGCATATCAAGTGA  193
       || |||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGCTTCTGGGCTAATATCCACTTATCAGTGAGTGCATATCATGTGA  297

seq1: chr7_7013708_7014803
seq2: B6Ng01-089A12.g_72_1160

seq1  GAATTCACAATGGCCTAGCAAATAGGTGGGTTTACCATGAAAGAGTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAATGGCCTAGCAAATAGGTGGGTTTACCATGAAAGAGTTAGG  50

seq1  GAATCCCCCTGAGGCAGGTTTCTTCACTAGGCCCAAAGAAACAGCATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCCCTGAGGCAGGTTTCTTCACTAGGCCCAAAGAAACAGCATAAT  100

seq1  CAGGCATTTACTAAGAACCCCTGGTGGTGGGTTTAACAATAGACTAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATTTACTAAGAACCCCTGGTGGTGGGTTTAACAATAGACTAGCAT  150

seq1  TACATCTGGCTCCATTCTTAGTGGTAAACAGCAGCGGCCTGGTCCCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTGGCTCCATTCTTAGTGGTAAACAGCAGCGGCCTGGTCCCTGCC  200

seq1  ATCTTTTGATGTATACATTCCTTATGTTTTGTGTCACTGTAACTCGGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGATGTATACATTCCTTATGTTTTGTGTCACTGTAACTCGGCGG  250

seq1  ATGTATCTCGCCTGGTTTCTTGTTATTCTTCTGTATAAAAAGTTTGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTCGCCTGGTTTCTTGTTATTCTTCTGTATAAAAAGTTTGATGC  300

seq1  TCGACTTGACAAAGTACATTCAGATTCTACACAATCTCATGTGTCACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACTTGACAAAGTACATTCAGATTCTACACAATCTCATGTGTCACTTC  350

seq1  TGTTCGTCATTCATTCGATGGCTCCTTGTCCACCTGCAACTAGAGACCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGTCATTCATTCGATGGCTCCTTGTCCACCTGCAACTAGAGACCCG  400

seq1  TTCTACGCAGACAGAGACCAAAAAGGGTCTGTAGCAAATCAACAGCACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACGCAGACAGAGACCAAAAAGGGTCTGTAGCAAATCAACAGCACTC  450

seq1  CCATAGTTTACTGTTTGATCTACACTGATAGTAACCTCATAGGAAGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTTTACTGTTTGATCTACACTGATAGTAACCTCATAGGAAGCTGT  500

seq1  CTCATGGAAATCCACGGAGGTTAACTGTAGTCTCCCCTCCCCCAGCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGAAATCCACGGAGGTTAACTGTAGTCTCCCCTCCCCCAGCCTGA  550

seq1  AACCTGCTTGCTCAGGGGTGGAGCTTCCCGCTCAATCGTTCTGCCATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCTTGCTCAGGGGTGGAGCTTCCCGCTCAATCGTTCTGCCATGCC  600

seq1  CACTGCTGGAACCTGCCGCTTTGCTGCTTGGAGCCACACACGTGTTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTGGAACCTGCCGCTTTGCTGCTTGGAGCCACACACGTGTTCACC  650

seq1  CTGCTACTGGACCCCGAGACCAGTTGGCGGGAATCGGGTTCCCTCCCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACTGGACCCCGAGACCAGTTGGCGGGAATCGGGTTCCCTCCCCCT  700

seq1  TCCTTTATAACTGAATGTCGGAACTAGTAAAATTGAGCTTTGAACAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTATAACTGAATGTCGGAACTAGTAAAATTGAGCTTTGAACAGGAT  750

seq1  GAACTTGTCTTGGCTCCGTTTCTTCTTTCCCCCGTCTAGTTCCTCCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTCTTGGCTCCGTTTCTTCTTTCCCCCGTCTAGTTCCTCCCTTA  800

seq1  GCTCGAGTGGCCATCTCAGTCGAACCATTCACGTTCATGTTCACGTTGCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGAGTGGCCATCTCAGTCGAACCATTCACGTTCATGTTCACGTTGCG  850

seq1  AGCTGCTGGCCGGCTGCAACAGTTAACAATGTGTTCATGCACATTGAGGG  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCTGCTGGCCGGCTGCAACAGTTAACAATGTG-TCATGCACATTGAGGG  899

seq1  TCTTCATGCTTCCCTTGTTCTTGTACTTGCATACACAGAGGGTTTTGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGCTTCCCTTGTTCTTGTACTTGCATACACAGAGGGTTTTGTCA  949

seq1  TTAGCACAATTCAAAATTAACTCCCTCTGACCCTGATCAGAACTCCAAGT  1000
       |||||| | ||||||||||||||||||||||||||||||||||||||||
seq2  -TAGCAC-ACTCAAAATTAACTCCCTCTGACCCTGATCAGAACTCCAAGT  997

seq1  CCC-TAATTATCATGGCCCACAAGAGTCATAAGGCACATGCCAGTACTGA  1049
      ||| |||||||||||| ||||||||||||||||||||||| |||||||||
seq2  CCCTTAATTATCATGG-CCACAAGAGTCATAAGGCACATG-CAGTACTGA  1045

seq1  CATCCCACATCTTAATAGTTTTGTCTCTGGAACCAGATAGCAAGAAG  1096
      ||| ||||||| |||||| |||||||||||||||  ||  |||||||
seq2  CAT-CCACATC-TAATAG-TTTGTCTCTGGAACCGAATGCCAAGAAG  1089