BAC Information

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BAC

Clone NameB6Ng01-089J05
Chromosome7 (Build37)
Map Location 139,118,693 - 139,265,550
singlet/doubletdoublet
Overlap geneGpr26, Cpxm2
Upstream geneHtra1, Dmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679
Downstream gene4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089J05.bB6Ng01-089J05.g
ACCDH902118DH902119
length1,096627
definitionDH902118|Mus musculus domesticus DNA, BAC clone: B6Ng01-089J05, 5' end.DH902119|Mus musculus domesticus DNA, BAC clone: B6Ng01-089J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,118,693 - 139,119,795)(139,264,932 - 139,265,550)
sequence
gaattctctcagtcctaagtatggtgtgaggttaacctgaatatgtggaa
aaactttcccccctacacaaaaggaagggtctaatctctttggtttgtaa
taaatagttcaggatgtccaaatagaatgtccctgagtggcatgagcgct
gtggagatcttccttgctaaaggacaggccctgagcataagctctgtttc
ccagaagtttgaggttagttcttcaagcctctcacttagttctcctcctg
gtgtttgtgttcctatcccctgcgggacctgtgccttccacgtgcccacc
ttccagatgccacaggtatttctacccctgtctgtggccttctgagcatc
tctcctccagaactggttgtcataactctataaatacatttccacatggg
aaacacacatgcttcatgcacagtcctggcactggccctttaagatcctg
agaatgctgcaagctagttaagaggctgttgtctgaaccaaagagcagcc
ccagctctctacacccacccagtgcctctgccaagattttatattgcctc
tttctagcgtagtaaaaagtgaaaagacacaagcaaaggccactgcggtg
actgtgccccaagcagcagctgtggggtagaagaaaggtcaggtttccag
gatgcagaaaacagtctcaatctcccttcctcccctattcatgcgcttca
aatcattctgacgtcttggggtccagaaacacataaggaatcccccaacc
gtgcccagactggttctgactccctaggaaggttgttttaggtaggaaga
cacacatctagattgtgactacagcagaagctggaacccagtgcagacct
ggaatgcagaggtcagagcctcctggggtaggaagtgagggctttgcgat
ggtatttcagcctgcatcatctgtcactcgatttcaaaagtacatcaata
atacatgaatgggttctttgtatgcataaacatgacaatacaggaaagcc
tcaggacccacttcccagctgcttctccatcttcgattgtaactgaaata
taagttacacaataagaacaacccagtcatgcaaggttggtgattt
gaattcagttccttgaggaccattgttacaatgttctgacagccaaaggg
aggaccactcttttcgaagatcttggtcccagtggggatggctgaactga
gagtgtgacttttgtcccaagatcatctctaagctagtgactagctgagc
ttgctaatgggttcacagcctgggcctgggtcacaggcttgcaccggagc
acatggggcaagccactctgaatcacatgaaataggtgccagtgggagaa
agggactcttggaacataaggaagccagggagagcagcagatggctgata
gccaatctgagctcaattcttaattttaaaactgagagatgaactcttta
gaaattctcaatacacacacacacacacacacacacacacacacacagag
agagagagagagagagagagagagagagagagagaggaagaagtatttat
ttaatatggaagactcagcatcatgaaagatattggtatattgatacagt
tctacatcttgtcctggatctttcaatatactgtctagtttccagggaga
aaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggatcgaa
ggaaataatgaacgaaggaaggaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_139118693_139119795
seq2: B6Ng01-089J05.b_47_1142

seq1  GAATTCTCTCAGTCCTAAGTATGGTGTGAGGTTAACCTGAATATGTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGTCCTAAGTATGGTGTGAGGTTAACCTGAATATGTGGAA  50

seq1  AAACTTTCCCCCCTACACAAAAGGAAGGGTCTAATCTCTTTGGTTTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCCCCCCTACACAAAAGGAAGGGTCTAATCTCTTTGGTTTGTAA  100

seq1  TAAATAGTTCAGGATGTCCAAATAGAATGTCCCTGAGTGGCATGAGCGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTTCAGGATGTCCAAATAGAATGTCCCTGAGTGGCATGAGCGCT  150

seq1  GTGGAGATCTTCCTTGCTAAAGGACAGGCCCTGAGCATAAGCTCTGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGATCTTCCTTGCTAAAGGACAGGCCCTGAGCATAAGCTCTGTTTC  200

seq1  CCAGAAGTTTGAGGTTAGTTCTTCAAGCCTCTCACTTAGTTCTCCTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTTTGAGGTTAGTTCTTCAAGCCTCTCACTTAGTTCTCCTCCTG  250

seq1  GTGTTTGTGTTCCTATCCCCTGCGGGACCTGTGCCTTCCACGTGCCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGTTCCTATCCCCTGCGGGACCTGTGCCTTCCACGTGCCCACC  300

seq1  TTCCAGATGCCACAGGTATTTCTACCCCTGTCTGTGGCCTTCTGAGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATGCCACAGGTATTTCTACCCCTGTCTGTGGCCTTCTGAGCATC  350

seq1  TCTCCTCCAGAACTGGTTGTCATAACTCTATAAATACATTTCCACATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCAGAACTGGTTGTCATAACTCTATAAATACATTTCCACATGGG  400

seq1  AAACACACATGCTTCATGCACAGTCCTGGCACTGGCCCTTTAAGATCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACATGCTTCATGCACAGTCCTGGCACTGGCCCTTTAAGATCCTG  450

seq1  AGAATGCTGCAAGCTAGTTAAGAGGCTGTTGTCTGAACCAAAGAGCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTGCAAGCTAGTTAAGAGGCTGTTGTCTGAACCAAAGAGCAGCC  500

seq1  CCAGCTCTCTACACCCACCCAGTGCCTCTGCCAAGATTTTATATTGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCTCTACACCCACCCAGTGCCTCTGCCAAGATTTTATATTGCCTC  550

seq1  TTTCTAGCGTAGTAAAAAGTGAAAAGACACAAGCAAAGGCCACTGCGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGCGTAGTAAAAAGTGAAAAGACACAAGCAAAGGCCACTGCGGTG  600

seq1  ACTGTGCCCCAAGCAGCAGCTGTGGGGTAGAAGAAAGGTCAGGTTTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCCCCAAGCAGCAGCTGTGGGGTAGAAGAAAGGTCAGGTTTCCAG  650

seq1  GATGCAGAAAACAGTCTCAATCTCCCTTCCTCCCCTATTCATGCGCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAAAACAGTCTCAATCTCCCTTCCTCCCCTATTCATGCGCTTCA  700

seq1  AATCATTCTGACGTCTT-GGGTCCAGAAACACATAAGGAATCCCCCAACC  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATCATTCTGACGTCTTGGGGTCCAGAAACACATAAGGAATCCCCCAACC  750

seq1  GTGCCCAGACTGGTTCTGACTCCCTAGGAAGGTTGTTTTAGGTAGGAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCAGACTGGTTCTGACTCCCTAGGAAGGTTGTTTTAGGTAGGAAGA  800

seq1  CACACATCTAGATTGTGACTACAGCAGAAGCTGGAACCCAGTGCAGACCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATCTAGATTGTGACTACAGCAGAAGCTGGAACCCAGTGCAGACCT  850

seq1  GGAATGCAGAGGTCAGAGCCTCCTGGGGTAGGAAGTGAGGGCTTTGCGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCAGAGGTCAGAGCCTCCTGGGGTAGGAAGTGAGGGCTTTGCGAT  900

seq1  GGTATTTCAGCCTGCATCATCTGTCACTCGATTTCAAAAGGTACATCAAT  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGTATTTCAGCCTGCATCATCTGTCACTCGATTTCAAAA-GTACATCAAT  949

seq1  AATACATGAATGGGTTCTTTGTATGCATAAACATGAACAAATACAGGAAA  999
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  AATACATGAATGGGTTCTTTGTATGCATAAACATGA--CAATACAGGAAA  997

seq1  GCCCCAGGACCCACTTCCCAGCCTGCTTCTCCCATCTCCGATTGTAACTG  1049
      ||| ||||||||||||||||| |||||||| |||||| ||||||||||||
seq2  GCCTCAGGACCCACTTCCCAG-CTGCTTCT-CCATCTTCGATTGTAACTG  1045

seq1  AGATATAAGTTACACATAAAGAACACACCCAGTTCATGCACAGTTTGGTG  1099
      | ||||||||||||||  ||||||| |||||| ||||||| || ||||||
seq2  AAATATAAGTTACACAATAAGAACA-ACCCAG-TCATGCA-AGGTTGGTG  1092

seq1  ATTT  1103
      ||||
seq2  ATTT  1096

seq1: chr7_139264932_139265550
seq2: B6Ng01-089J05.g_70_696 (reverse)

seq1  TCCTTCCTTCCTTC--------TTTCCTTCCTTCCTTCCTTCCTTCCTTC  42
      ||||||||||||||        ||||||||  ||||||||||||||||||
seq2  TCCTTCCTTCCTTCGTTCATTATTTCCTTCGATCCTTCCTTCCTTCCTTC  50

seq1  CTTCCTTCCTTCCTTCCTTCCTTCCTTTCTCCCTGGAAACTAGACAGTAT  92
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTTCCTTCCTTCCTTCCTTTCTCCCTGGAAACTAGACAGTAT  100

seq1  ATTGAAAGATCCAGGACAAGATGTAGAACTGTATCAATATACCAATATCT  142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGATCCAGGACAAGATGTAGAACTGTATCAATATACCAATATCT  150

seq1  TTCATGATGCTGAGTCTTCCATATTAAATAAATACTTCTTCCTCTCTCTC  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATGCTGAGTCTTCCATATTAAATAAATACTTCTTCCTCTCTCTC  200

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTG  250

seq1  TGTGTGTGTGTGTGTATTGAGAATTTCTAAAGAGTTCATCTCTCAGTTTT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTATTGAGAATTTCTAAAGAGTTCATCTCTCAGTTTT  300

seq1  AAAATTAAGAATTGAGCTCAGATTGGCTATCAGCCATCTGCTGCTCTCCC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAGAATTGAGCTCAGATTGGCTATCAGCCATCTGCTGCTCTCCC  350

seq1  TGGCTTCCTTATGTTCCAAGAGTCCCTTTCTCCCACTGGCACCTATTTCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCTTATGTTCCAAGAGTCCCTTTCTCCCACTGGCACCTATTTCA  400

seq1  TGTGATTCAGAGTGGCTTGCCCCATGTGCTCCGGTGCAAGCCTGTGACCC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTCAGAGTGGCTTGCCCCATGTGCTCCGGTGCAAGCCTGTGACCC  450

seq1  AGGCCCAGGCTGTGAACCCATTAGCAAGCTCAGCTAGTCACTAGCTTAGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGGCTGTGAACCCATTAGCAAGCTCAGCTAGTCACTAGCTTAGA  500

seq1  GATGATCTTGGGACAAAAGTCACACTCTCAGTTCAGCCATCCCCACTGGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCTTGGGACAAAAGTCACACTCTCAGTTCAGCCATCCCCACTGGG  550

seq1  ACCAAGATCTTCGAAAAGAGTGGTCCTCCCTTTGGCTGTCAGAACATTGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGATCTTCGAAAAGAGTGGTCCTCCCTTTGGCTGTCAGAACATTGT  600

seq1  AACAATGGTCCTCAAGGAACTGAATTC  619
      |||||||||||||||||||||||||||
seq2  AACAATGGTCCTCAAGGAACTGAATTC  627