BAC Information

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BAC

Clone NameB6Ng01-092A20
Chromosome7 (Build37)7 (Build37)
Map Location 135,050,274 - 135,050,90172,297,147 - 72,297,555
singlet/doubletsingletsinglet
Overlap geneBckdk
Upstream geneKctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1
Downstream geneMyst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092A20.bB6Ng01-092A20.g
ACCDH903917DH903918
length628202
definitionDH903917|Mus musculus domesticus DNA, BAC clone: B6Ng01-092A20, 5' end.DH903918|Mus musculus domesticus DNA, BAC clone: B6Ng01-092A20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(135,050,274 - 135,050,901)(72,297,147 - 72,297,555)
sequence
gaattctcctctccatcttcttaatgctgggattacatatttacttgttt
tctatgtacacgagagtttgtctgtatgtatgtatgtgcaccatgtttgt
gcttggtgccacagaggtgctcctagaactggagttataggcaattgtga
gtcccctgtaagaacaagtgctctcaacaatcaggaaccatctctccagc
acctccggaagagcagtcagtgctcttaactgctgagccatctctccatc
cccctattactgacatcttaaactagtggagggctcttttgtattttagg
ctgtttagtacaacccttggtttctattcatttgacaccagaagtgccct
tccattcgaggagcaacggtgtatccatgtggtgcccactgggaagaaga
atcagctcaagttgagaactgtaactctaggggcacctactgaacccttc
tatccacagacgcctgtgtgagcacaagtatggcaatgcccctcgagtcc
gcatcaacggacatgtggctgcccggttccccttcattcccatgccgctg
gactatatcctgcctgagctgctcaagaatgccatgaggtgggctggctg
gttgtgcttggggatgggggtggagggt
aagattgacctaggatataaattaagacattacctcaatatatatatata
tgtgtgtgtatatatgtgtgtgtatgtgtgtgtgtatgtgtatgtaggtg
tatatatatatatgtatatatatatgtgtgtgtgtgtgtgtgtatgtata
tatatatatatatatatatatatatacacacatgtgtgtgtgagttttat
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_135050274_135050901
seq2: B6Ng01-092A20.b_40_667

seq1  GAATTCTCCTCTCCATCTTCTTAATGCTGGGATTACATATTTACTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCTCCATCTTCTTAATGCTGGGATTACATATTTACTTGTTT  50

seq1  TCTATGTACACGAGAGTTTGTCTGTATGTATGTATGTGCACCATGTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTACACGAGAGTTTGTCTGTATGTATGTATGTGCACCATGTTTGT  100

seq1  GCTTGGTGCCACAGAGGTGCTCCTAGAACTGGAGTTATAGGCAATTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTGCCACAGAGGTGCTCCTAGAACTGGAGTTATAGGCAATTGTGA  150

seq1  GTCCCCTGTAAGAACAAGTGCTCTCAACAATCAGGAACCATCTCTCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTGTAAGAACAAGTGCTCTCAACAATCAGGAACCATCTCTCCAGC  200

seq1  ACCTCCGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCATC  250

seq1  CCCCTATTACTGACATCTTAAACTAGTGGAGGGCTCTTTTGTATTTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATTACTGACATCTTAAACTAGTGGAGGGCTCTTTTGTATTTTAGG  300

seq1  CTGTTTAGTACAACCCTTGGTTTCTATTCATTTGACACCAGAAGTGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAGTACAACCCTTGGTTTCTATTCATTTGACACCAGAAGTGCCCT  350

seq1  TCCATTCGAGGAGCAACGGTGTATCCATGTGGTGCCCACTGGGAAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCGAGGAGCAACGGTGTATCCATGTGGTGCCCACTGGGAAGAAGA  400

seq1  ATCAGCTCAAGTTGAGAACTGTAACTCTAGGGGCACCTACTGAACCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTCAAGTTGAGAACTGTAACTCTAGGGGCACCTACTGAACCCTTC  450

seq1  TATCCACAGACGCCTGTGTGAGCACAAGTATGGCAATGCCCCTCGAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACAGACGCCTGTGTGAGCACAAGTATGGCAATGCCCCTCGAGTCC  500

seq1  GCATCAACGGACATGTGGCTGCCCGGTTCCCCTTCATTCCCATGCCGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAACGGACATGTGGCTGCCCGGTTCCCCTTCATTCCCATGCCGCTG  550

seq1  GACTATATCCTGCCTGAGCTGCTCAAGAATGCCATGAGGTGGGCTGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATATCCTGCCTGAGCTGCTCAAGAATGCCATGAGGTGGGCTGGCTG  600

seq1  GTTGTGCTTGGGGATGGGGGTGGAGGGT  628
      ||||||||||||||||||||||||||||
seq2  GTTGTGCTTGGGGATGGGGGTGGAGGGT  628

seq1: chr7_72297147_72297555
seq2: B6Ng01-092A20.g_121_274 (reverse)

seq1  ATATAAAAGTATACACACATATATACACAGACACATGTATATATATATAT  50
      |||||||| |               |||| |||||||| | |||||||||
seq2  ATATAAAACT---------------CACACACACATGTGTGTATATATAT  35

seq1  ATATATATATATATATATACATATATATATATACACACACACACATATAT  100
      ||||||||||||||||||  ||| ||| | | ||||||||||||||||||
seq2  ATATATATATATATATAT--ATACATACACACACACACACACACATATAT  83

seq1  ATATACACATATATATATACAGACACACATATATACACACATTCACACAT  150
      ||||||| |||||||||||||   ||| | | |||||||    |||||||
seq2  ATATACATATATATATATACACCTACATACACATACACA----CACACAT  129

seq1  ATACACATAGACAGACACAAACATGTACATACACATAGATATACATACAC  200
      | ||||| | | | ||||| ||||                          
seq2  ACACACACATATATACACACACATA-------------------------  154

seq1  AAACACACATATATATACACATACATACATACACCTATATTCCCACATTC  250
                                                        
seq2  --------------------------------------------------  154

seq1  TTACACATATACACAGAGACAGACACGTATAAATACACCTACACATATAG  300
                                                        
seq2  --------------------------------------------------  154

seq1  TCACACAGACACACACAAGCACATACAGTACACACATGCACACATCTTAC  350
                                                        
seq2  --------------------------------------------------  154

seq1  ACACATATACACATGCACATAGACACACATATATGCACAGGCATTCATAC  400
                                                        
seq2  --------------------------------------------------  154

seq1  ACACACATA  409
               
seq2  ---------  154