BAC Information

Click to search

BAC

Clone NameB6Ng01-092N01
Chromosome7 (Build37)
Map Location 123,087,875 - 123,220,973
singlet/doubletdoublet
Overlap geneSox6, 1110006G14Rik, EG668479
Upstream geneLOC668472, LOC100042779
Downstream geneLOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092N01.bB6Ng01-092N01.g
ACCDH904471DH904472
length1,1521,077
definitionDH904471|Mus musculus domesticus DNA, BAC clone: B6Ng01-092N01, 5' end.DH904472|Mus musculus domesticus DNA, BAC clone: B6Ng01-092N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,219,859 - 123,220,973)(123,087,875 - 123,088,914)
sequence
gaattcttatttcggaccttacttcttttttgcctcgtcgtgtgtacgca
agtgaatccgcatcgcgttcctcagctgcctcgtgtatgtaggagagctt
gggcctgacgctttgaagccctcgctgttgaaccatacagaatatttacc
tcaataaatcataataagaaaataatgtactgttatacccacagagaaag
agaattcaaaacaccgatttatgtgtttcgtgcctactccctctcccact
gtgttttgaatttcaggcatgtttgtcatctttggctgctccttgtatct
ttaaacaaaggggttctccttgttctttattttattttttacattcctca
ttaagtttgttatttttctttgagttacagacatgatttgaatagtatac
caagtttcatatttaaaaggacttatatctcttttcttagttaaacaaaa
attagaaagaattgctaatttattttaaataaaataaggtatacttgctt
aaatttgtgacatatgaactgaaattccatgtgatgaatttttttttgtc
atcattttgaagtattcatgagaaagaggaagaacaatggaaaaaagacc
actactttagctccagccttgactgggtatggtagtttgcctataatcac
ctggccaggataattgtgagtttgaggccagtctggaccacacaatggag
agactcatctcagttgaactagtttacttatttacaatgataatagtgtt
atggaaagatacatttgttcacacatgcctatttcaggcttttgaaggta
aaatatcccatatccagaagtgaagtggtaatgtgaggaaaggagtgaca
gtgagctcaacagagtccagcaggcagggtagaggcagaggcaagcaggc
tctgagtgtgagtccagcctgctctacacagtgagctccaggccagctgt
ggctacatagtgagaccctgtctttaagtacgtaagtaaacaaacaaaca
aaataatatcagatcaggaaatttgtgcctgaataaaacttatcagatgt
gttgttaagaggacataaagggttttaacaactaaattatcaaaaggata
aaggtttactgattcaatgtaggacactaattttttttactgattgaaaa
at
gaattccttttctttcaaatatgctgatcatgttcgggtgttggatcctg
aggtgaattagttcagaaggaggcagtgtttgctctacgcttgggtggag
tgttatctgctgaggctgtgccttgcatcctgattggccactgttctacc
ctccattctcatgcttgcacacacctcagttacactggatggatgaatgt
ttttcagacttcctgaacccgcgttataaaactttactagcggattgagt
cacttatgcctctaaatatctttggtttcctccctccggagcccccatgc
gtcataaagtagttaaggcgtttgattttattggttggcctaaataaagc
acattttggttccttgaaaacaaaggaactttgttacagaggctgtattc
tttccagaatgtgaagatgctgatgagaggtgttcaaatgaaagtaatga
ctgaacttaagttactaatttatctcaggaactttcctggactctaggga
tgagtttgacacattctacggctttaaaaatatagacggcaaacacacag
tgagaactaactaggttaagtaaaattcattcaagaaaacaaaaaaaact
ttggtcaatatattgttgtagaaaccactatactatgtttcacaatccct
acaattgatcaaaatagattagagatgcgcatctgacagtaagagtcaaa
acacagtaaatatctaattctgcccttccatggcacctaaaatacacttt
gacctaggggtcatgacaatctattctaatctctagtcaggacctaggga
cagtgagggtctggtatttgagcgggagaggatctggttagagtaatgtt
ttctcaacccgtgatcataactcctctggggtcaaacaatgctttcacag
gctacatatcagacatttacattctatttctagaatgacattattatgag
gtagcaacaaaatgcttttataatgagggcaccacagttgggggagctgt
ataaaggatctcagcactagaagctgaggaccactggaatagagctctca
tgctcccgtccaatgctctgcgctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_123219859_123220973
seq2: B6Ng01-092N01.b_94_1196 (reverse)

seq1  ATTTTTCTAAATACAGTAAAAAAAATTAAGTTGTCTTACATTGAATCAGT  50
      |||||||  ||| |||||||||||||||   |||| ||||||||||||||
seq2  ATTTTTC--AAT-CAGTAAAAAAAATTA--GTGTCCTACATTGAATCAGT  45

seq1  AAAACTTTTATACTTTTTGATAAATTAGTTGTTTAAAACACTTTATGTCC  100
       |||| ||||| | ||||||||| ||||||| ||||||| ||||||||||
seq2  -AAACCTTTAT-CCTTTTGATAATTTAGTTG-TTAAAACCCTTTATGTCC  92

seq1  TCTTTACAACAACATCTGATAAGTTTTATTCTAGGCACAAATTTCCTGAT  150
      |||| ||||| |||||||||||||||||||| ||||||||||||||||||
seq2  TCTTAACAAC-ACATCTGATAAGTTTTATTC-AGGCACAAATTTCCTGAT  140

seq1  CTGATATTTATTTTTGTTTGTTTGTTTACTTACGTACTTAAAGACAGGGT  200
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  CTGATATT--ATTTTGTTTGTTTGTTTACTTACGTACTTAAAGACAGGGT  188

seq1  CTCACTATGTAGCCACAGCTGGCCTGGAGCTCACTGTGTAGAGCAGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATGTAGCCACAGCTGGCCTGGAGCTCACTGTGTAGAGCAGGCTG  238

seq1  GACTCACACTCAGAGCCTGCTTGCCTCTGCCTCTACCCTGCCTGCTGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACACTCAGAGCCTGCTTGCCTCTGCCTCTACCCTGCCTGCTGGAC  288

seq1  TCTGTTGAGCTCACTGTCACTCCTTTCCTCACATTACCACTTCACTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGAGCTCACTGTCACTCCTTTCCTCACATTACCACTTCACTTCTG  338

seq1  GATATGGGATATTTTACCTTCAAAAGCCTGAAATAGGCATGTGTGAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGGATATTTTACCTTCAAAAGCCTGAAATAGGCATGTGTGAACAA  388

seq1  ATGTATCTTTCCATAACACTATTATCATTGTAAATAAGTAAACTAGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTTTCCATAACACTATTATCATTGTAAATAAGTAAACTAGTTCA  438

seq1  ACTGAGATGAGTCTCTCCATTGTGTGGTCCAGACTGGCCTCAAACTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGATGAGTCTCTCCATTGTGTGGTCCAGACTGGCCTCAAACTCACA  488

seq1  ATTATCCTGGCCAGGTGATTATAGGCAAACTACCATACCCAGTCAAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCTGGCCAGGTGATTATAGGCAAACTACCATACCCAGTCAAGGCT  538

seq1  GGAGCTAAAGTAGTGGTCTTTTTTCCATTGTTCTTCCTCTTTCTCATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAAAGTAGTGGTCTTTTTTCCATTGTTCTTCCTCTTTCTCATGAA  588

seq1  TACTTCAAAATGATGACAAAAAAAAATTCATCACATGGAATTTCAGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAAAATGATGACAAAAAAAAATTCATCACATGGAATTTCAGTTCA  638

seq1  TATGTCACAAATTTAAGCAAGTATACCTTATTTTATTTAAAATAAATTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCACAAATTTAAGCAAGTATACCTTATTTTATTTAAAATAAATTAG  688

seq1  CAATTCTTTCTAATTTTTGTTTAACTAAGAAAAGAGATATAAGTCCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTTCTAATTTTTGTTTAACTAAGAAAAGAGATATAAGTCCTTTT  738

seq1  AAATATGAAACTTGGTATACTATTCAAATCATGTCTGTAACTCAAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGAAACTTGGTATACTATTCAAATCATGTCTGTAACTCAAAGAAA  788

seq1  AATAACAAACTTAATGAGGAATGTAAAAAATAAAATAAAGAACAAGGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAACTTAATGAGGAATGTAAAAAATAAAATAAAGAACAAGGAGA  838

seq1  ACCCATTAGTTTAAAGATACAAGGAGCAGCCAAAGATGACAAACATGCCT  900
      |||| || ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTTGTTTAAAGATACAAGGAGCAGCCAAAGATGACAAACATGCCT  888

seq1  GAAATTCAAAACACAGTGGGAGAGGGAGTAGGCACGAAACACATAAATCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCAAAACACAGTGGGAGAGGGAGTAGGCACGAAACACATAAATCG  938

seq1  GTGTTTTGAATTCTCTTTCTCTGTGGGTATAATTGTACCTTATTTTCTTA  1000
      ||||||||||||||||||||||||||||||||  |||| |||||||||||
seq2  GTGTTTTGAATTCTCTTTCTCTGTGGGTATAACAGTACATTATTTTCTTA  988

seq1  TAATGATTTATTGAGGTAAATATTCTGTATGGTTTAACAGCTAGGGCTTC  1050
      | |||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  TTATGATTTATTGAGGTAAATATTCTGTATGGTTCAACAGCGAGGGCTTC  1038

seq1  AAAGTGTCAGGCACAAGCTCTCCTTTATTCATGAGGCAGCTGAGGACTGG  1100
      |||| ||||||| |||||||||||  || || ||||||||||||||  | 
seq2  AAAGCGTCAGGCCCAAGCTCTCCTACATACACGAGGCAGCTGAGGAACGC  1088

seq1  GATGCGGATTCACTT  1115
      |||||||||||||||
seq2  GATGCGGATTCACTT  1103

seq1: chr7_123087875_123088914
seq2: B6Ng01-092N01.g_117_1143

seq1  AGGTGAATTAGTAAAGAAGGAGGCAGTGTTTGCTCTACACAGGGGTGGAG  50
      ||||||||||||  |||||||||||||||||||||||| |  ||||||||
seq2  AGGTGAATTAGTTCAGAAGGAGGCAGTGTTTGCTCTACGCTTGGGTGGAG  50

seq1  TGTTAGCTGCTGAGGCTGTGCCTTGCATCCTGCATGGCCACAGTTCTACC  100
      ||||| ||||||||||||||||||||||||||  ||||||| ||||||||
seq2  TGTTATCTGCTGAGGCTGTGCCTTGCATCCTGATTGGCCACTGTTCTACC  100

seq1  CAGCATTCTCATGCTTGCACACACTTCAGTTACACTGAAGTAGCAG-ATG  149
      |  ||||||||||||||||||||| |||||||||||| | | |  | |||
seq2  CTCCATTCTCATGCTTGCACACACCTCAGTTACACTGGA-TGGATGAATG  149

seq1  TAGTTCAAACATGCAGAGCCGGCGTTATAAAACTATACTAGCACAATGAG  199
      |  |||| || | | || || ||||||||||||| |||||||  | ||||
seq2  TTTTTCAGACTTCCTGAACCCGCGTTATAAAACTTTACTAGCGGATTGAG  199

seq1  TCACTTATGCCTCTAAATATCTATGGTTTCCTCCCTCCGGAGCCCCCATG  249
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCACTTATGCCTCTAAATATCTTTGGTTTCCTCCCTCCGGAGCCCCCATG  249

seq1  CATTAGAAAGTAGTTAGGTCGTTTGCTTTTATTGTTTGGCCTAAATAAAG  299
      | | | |||||||||| | |||||| |||||||| |||||||||||||||
seq2  CGTCATAAAGTAGTTAAGGCGTTTGATTTTATTGGTTGGCCTAAATAAAG  299

seq1  CACATTTTGGTTCCATGAAAACAAAGGAACTTTGTTACAGAGGCTGTATT  349
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACATTTTGGTTCCTTGAAAACAAAGGAACTTTGTTACAGAGGCTGTATT  349

seq1  CTTTCCAGAATGTGAAGATGCTGATGAGTGGTGTTCAAATGAAAGTAATG  399
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTTCCAGAATGTGAAGATGCTGATGAGAGGTGTTCAAATGAAAGTAATG  399

seq1  ACGGAACTTAAGTTACTAATTTAGCTCAGGAACTTTCCTGGACTCTAGGG  449
      || |||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACTGAACTTAAGTTACTAATTTATCTCAGGAACTTTCCTGGACTCTAGGG  449

seq1  ATGAGTTTGACTCATTCTGCGTCTTTAAAAATATAGACGGCAAACACACA  499
      ||||||||||| |||||| || ||||||||||||||||||||||||||||
seq2  ATGAGTTTGACACATTCTACGGCTTTAAAAATATAGACGGCAAACACACA  499

seq1  GTGAGAACTAACTAGGTTAAGTAAAATTCATTCAAGAAAACAAAAAAAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAACTAACTAGGTTAAGTAAAATTCATTCAAGAAAACAAAAAAAAC  549

seq1  TTTGGTCAATATATTGTTGTAGAAACCACTATACTATGTTTCACAATCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCAATATATTGTTGTAGAAACCACTATACTATGTTTCACAATCCC  599

seq1  TACAATTGATCAAAATAGATTAGAGATGCGCATCTGAAAGTAAGAGTCAA  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TACAATTGATCAAAATAGATTAGAGATGCGCATCTGACAGTAAGAGTCAA  649

seq1  AACACAGTAAATATCTAATTCTGCCCTTCCATGGCACCTAAAATACACTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTAAATATCTAATTCTGCCCTTCCATGGCACCTAAAATACACTT  699

seq1  TGACCTAGGGGTCATGACAATCTATTCTAATCTCTAGTCAGGACCTAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAGGGGTCATGACAATCTATTCTAATCTCTAGTCAGGACCTAGGG  749

seq1  ACAGTGAGGGTCTGGTATTTGAGCGGGAGAGGATCTGGTTAGAGTAATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAGGGTCTGGTATTTGAGCGGGAGAGGATCTGGTTAGAGTAATGT  799

seq1  TTTCTCAACCCGTGGATCATAACTCCTCTGGGGTCAAACAATGCTTTCAC  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAACCCGT-GATCATAACTCCTCTGGGGTCAAACAATGCTTTCAC  848

seq1  AGGGTTACATATCAGACATTTACATTCTATTTCTAGAATGACAATTATTA  899
      | || ||||||||||||||||||||||||||||||||||||| |||||||
seq2  A-GGCTACATATCAGACATTTACATTCTATTTCTAGAATGAC-ATTATTA  896

seq1  TGAGGTAGCAACAAAAATGCTTTTATGATTGAGGGTCACCACAGTTTGGG  949
      |||||||||||| ||||||||||||| | |||||| |||||||||| |||
seq2  TGAGGTAGCAAC-AAAATGCTTTTAT-AATGAGGG-CACCACAGTTGGGG  943

seq1  GAGCTGTATTAAAGGGTCTCAGCACTAGAAGGCTGAGAACCACTGGATTA  999
      |||||||| |||||| |||||||||||||| |||||| ||||||||| ||
seq2  GAGCTGTA-TAAAGGATCTCAGCACTAGAA-GCTGAGGACCACTGGAATA  991

seq1  AAGCCTCCTCCATGCTTCCTCTCCAATGCTCTGCAGCTCTG  1040
       || |||   ||||| |||  ||||||||||||| ||||||
seq2  GAG-CTC--TCATGC-TCCCGTCCAATGCTCTGC-GCTCTG  1027