BAC Information

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BAC

Clone NameB6Ng01-099J22
Chromosome5 (Build37)7 (Build37)
Map Location 18,084,511 - 18,084,5683,119,110 - 3,120,263
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099J22.bB6Ng01-099J22.g
ACCDH909364DH909365
length9931,138
definitionDH909364|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J22, 5' end.DH909365|Mus musculus domesticus DNA, BAC clone: B6Ng01-099J22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,568)(3,119,110 - 3,120,263)
sequence
gaattctcaactgaggaaacttgaatggctgaaaagcacctaagaaacat
ccttagtcatcagggaaatgcaaaccaaaataaccctgagattccacctc
acaccagccagaatagccaagatcaaaaactcaggtaacagcagatgctg
gtgaggatgtggagaaagaagaacacttctccattgctgctgggattgca
agctggtacaaccactctggaaatcagtctggagttcctcagaaaattgg
acatagtactacctgaggacccagctataccactcctgggcatatgccca
gaagatgcttcaatatgtaataaggacatatgctccactatgttcatagc
agccatatttataacatccagaagctagaaacaacccagatatccctcaa
cagaggaatggatacataaaacatggtatatttacacaatggaattctac
tcagttattaaaaacaacgacttcatgaacttcgcaggcaaatgaatgga
ccttcaaaatatcatcctgagtgaagcaactcagtcacagaagaacacac
atggtatggactcactgaaaagtggatattatcccaaaattcggaatacc
caggattcagttcacagaccatatgaagcctaagaaaaaggaagaccaaa
atatggatgcttcagtgcttcttagaagggtgaacaaaatactcacagaa
gaaaatatagagacaaagtgttgagcagagattgaaggaaaggccatcca
gagactctcccacctgaggatccaccccatatacagccaccaaaccctga
taatattgtggatgcctggaagtgcttgctgatggaagcctgatatggtt
gtcccctaagaggctctgccagagcctcacaaatacagaggcaggttctt
gcagccaaccattaattggactgaggacaggagccccagatggaggagtt
gagagggactgaaaagctgagaggtttgcagtctcatggaggg
gaattcattagacctgataggtttttctgtgactgtggtactggaacact
gtccaatccttgtacattagctggtgagcctacacaggatacagataacg
ttatgtgactctgctccacctgtaacatctaatatgttgcagaacaattg
aattccttccctaaagaaaaagtcctgctattcaaacataacttaaaaca
tctttgggaagataaaatacttgcctgtgctacagaatgagactcgactg
agaaaaatggatacacaaggtcagttgtcactatgaaactcaagctacca
aaaggaagtggcactatattgactcaggatttcagagctcgggattttag
cattactgcgtaaaaagttttgaagggacagaagtgaagaaataagccac
acttttgtacagataccaacttctgaaaacgttggtgtctttacaatgag
cattaaatgcagtctgatttgcagtagtaatcttcaatagacaagctgct
ttgttgctgcctttatggacatgggtaccaattgcttttggtaatatggt
aaaaatgtgagctagcgggctggagagatggctcagtggttaagagcact
gactgctcttccaaaggtcctgagttcaaattccagcaaccacatggtga
ctcacaatcatccctaatgagatctggtgccctcttctggtgtgtctgaa
gacagctatggtgtactcacataaataaaataaatcttttaaaaaatgtg
agctagcacttctgcattgattttataacatgtattcagattgagaatgt
gattttaatgcttaaacctcatggagtttgtttttaatttcaaacacatc
ttactgtgcttgaatgtgccctgggtttgttagcacacctagacttgctg
taactgcactcatgtaacagtatgtaccttccctctaggaaagagaaaac
actagccttaggttgtatctagtgattttcctgtgtcctttaaggaaaat
aagactattatttctttccttttcctggtgcagcattcaaaaatcacccc
tagaaaagtgaagtgctttattgaagacttctagagatgcaggtgacaaa
gaatctgatctcagtttgtgaagtaaagctactagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084568
seq2: B6Ng01-099J22.b_363_420 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||| | ||||||||| ||||||||||||||||||||||||| ||||
seq2  CTTCTGGATGTTATAAATATGGCTGCTATGAACATAGTGGAGCATATGTC  50

seq1  CTTCTTAC  58
      ||| ||||
seq2  CTTATTAC  58

seq1: chr7_3119110_3120263
seq2: B6Ng01-099J22.g_67_1204 (reverse)

seq1  AAACATAGTAGCTTTAACTTTCACAAAACTGAGATACAAGAATACTTTTG  50
      |||| |||||||||||   ||||| ||||||||||   |||    || | 
seq2  AAAC-TAGTAGCTTTA--CTTCAC-AAACTGAGAT--CAGA----TTCTT  40

seq1  TTTCACCTTGCATCCCTTCCTAGGAAGTC-TCATTAAAGCAC-TCACTTT  98
      | ||||| |||||| ||      |||||| ||| |||||||| |||| ||
seq2  TGTCACC-TGCATCTCT-----AGAAGTCTTCAATAAAGCACTTCAC-TT  83

seq1  TTCTAGGGGTGATTTTTGAATGCTGCA-CAGGAAAGGGAAGGAAATAATA  147
      ||||||||||||||||||||||||||| ||||||| |||| |||||||||
seq2  TTCTAGGGGTGATTTTTGAATGCTGCACCAGGAAAAGGAAAGAAATAATA  133

seq1  GTCTTAATTTTTCTTAAAGGACACAAGGAAAATCACTAGATACAACCTAA  197
      ||||| ||||| |||||||||||| |||||||||||||||||||||||||
seq2  GTCTT-ATTTTCCTTAAAGGACAC-AGGAAAATCACTAGATACAACCTAA  181

seq1  GGCTAGTGTTTTTCTCTTTCCTAGAGGGAAGGTACATACTGTTACATGAG  247
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTG-TTTTCTCTTTCCTAGAGGGAAGGTACATACTGTTACATGAG  230

seq1  TGCAGTTACAGCAAGTCTAGGTGTGCTAACAAA-CCAGGGCACATTCAAG  296
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGCAGTTACAGCAAGTCTAGGTGTGCTAACAAACCCAGGGCACATTCAAG  280

seq1  CACAGTAAGATGTGTTTGAAATTAAAAACAAACTCCATGAGGTTTAAGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAAGATGTGTTTGAAATTAAAAACAAACTCCATGAGGTTTAAGCA  330

seq1  TTAAAATCACATTCTCAATCTGAATACATGTTATAAAATCAATGCAGAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCACATTCTCAATCTGAATACATGTTATAAAATCAATGCAGAAG  380

seq1  TGCTAGCTCACATTTTTTAAAAGATTTATTTTATTTATGTGAGTACACCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCTCACATTTTTTAAAAGATTTATTTTATTTATGTGAGTACACCA  430

seq1  TAGCTGTCTTCAGACACACCAGAAGAGGGCACCAGATCTCATTAGGGATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTCTTCAGACACACCAGAAGAGGGCACCAGATCTCATTAGGGATG  480

seq1  ATTGTGAGTCACCATGTGGTTGCTGGAATTTGAACTCAGGACCTTTGGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAGTCACCATGTGGTTGCTGGAATTTGAACTCAGGACCTTTGGAA  530

seq1  GAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCGCTAGCTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCGCTAGCTC  580

seq1  ACATTTTTACCATATTACCAAAAGCAATTGGTACCCATGTCCATAAAGGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTACCATATTACCAAAAGCAATTGGTACCCATGTCCATAAAGGC  630

seq1  AGCAACAAAGCAGCTTGTCTATTGAAGATTACTACTGCAAATCAGACTGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAAAGCAGCTTGTCTATTGAAGATTACTACTGCAAATCAGACTGC  680

seq1  ATTTAATGCTCATTGTAAAGACACCAACGTTTTCAGAAGTTGGTATCTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGCTCATTGTAAAGACACCAACGTTTTCAGAAGTTGGTATCTGT  730

seq1  ACAAAAGTGTGGCTTATTTCTTCACTTCTGTCCCTTCAAAACTTTTTACG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTGTGGCTTATTTCTTCACTTCTGTCCCTTCAAAACTTTTTACG  780

seq1  CAGTAATGCTAAAATCCCGAGCTCTGAAATCCTGAGTCAATATAGTGCCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATGCTAAAATCCCGAGCTCTGAAATCCTGAGTCAATATAGTGCCA  830

seq1  CTTCCTTTTGGTAGCTTGAGTTTCATAGTGACAACTGACCTTGTGTATCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTTGGTAGCTTGAGTTTCATAGTGACAACTGACCTTGTGTATCC  880

seq1  ATTTTTCTCAGTCGAGTCTCATTCTGTAGCACAGGCAAGTATTTTATCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTCAGTCGAGTCTCATTCTGTAGCACAGGCAAGTATTTTATCTT  930

seq1  CCCAAAGATGTTTTAAGTTATGTTTGAATAGCAGGACTTTTTCTTTAGGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGATGTTTTAAGTTATGTTTGAATAGCAGGACTTTTTCTTTAGGG  980

seq1  AAGGAATTCAATTGTTCTGCAACATATTAGATGTTACAGGTGGAGCAGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTCAATTGTTCTGCAACATATTAGATGTTACAGGTGGAGCAGAG  1030

seq1  TCACATAACGTTATCTGTATCCTGTGTAGGCTCACCAGCTAATGTACAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAACGTTATCTGTATCCTGTGTAGGCTCACCAGCTAATGTACAAG  1080

seq1  GATTGGACAGTGTTCCAGTACCACAGTCACAGAAAAACCTATCAGGTCTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGACAGTGTTCCAGTACCACAGTCACAGAAAAACCTATCAGGTCTA  1130

seq1  ATGAATTC  1154
      ||||||||
seq2  ATGAATTC  1138