BAC Information

Click to search

BAC

Clone NameB6Ng01-100B08
Chromosome7 (Build37)
Map Location 89,597,644 - 89,704,314
singlet/doubletdoublet
Overlap geneAdamtsl3
Upstream geneCpeb1, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3
Downstream gene1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100B08.bB6Ng01-100B08.g
ACCDH909687DH909688
length998794
definitionDH909687|Mus musculus domesticus DNA, BAC clone: B6Ng01-100B08, 5' end.DH909688|Mus musculus domesticus DNA, BAC clone: B6Ng01-100B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,703,316 - 89,704,314)(89,597,644 - 89,598,437)
sequence
gaattcttaactagttaccacagagatactcaagaatgagaaattttaaa
atgctccaaacataccgtaaaaccatgcccctctagggtgttttgcaatg
caaaaaagaaaaataatgaatttcacgaggcgaaataagataataaagtt
ttaatcattgagggacaagcctgctcaccactcaatgcagcagcagctga
agtggacatacagtaatgacacacaggacatgtgtgaatcattgcagtga
acctaagatctcccatgtgtcagagaagcacacaaccattgagctctgag
taacaatatttctgtttttttttttttgacttttattatactcattcatc
atataggtgtttataacgagaggaaaaggagttcactcaaaaaaaatagt
taaaagtaattttttttcatttctaattttctatagtaaacattttcctt
tttggggaggttggaatgaaaaataaaacaatggtatctgtgacatgata
caaaggacaaaaagttttattatgaaaagaagtttgttagtgaagaacta
ataattcaagcatagaagtagaataagaagcaggttggaatgcccgtgtg
ttaaaggtttggtccccagcttggcactatgaacaggtcatgaaccttta
agggatggagtcactgggacaggtctttagaggggtggtgggacttcagc
ccccatcctctctttctgttgccaacatcctccatctgagacttcaggag
cacagtcttcagggtacattctcactcacagtttcagtggtttgagctca
tggggtttggtgccattgtttctgggctggtgaactctatggcagcagga
gcttgcttcaatcacggtggacaggaagtgatgacttcagtatgagtatc
tttcaaagtatgcaattagaaaatcaattatagcctagccccaataagca
ggaagatggaactgcttttatcagaaagggagcacaggattgtgtgtg
gaattcataacttaaaaaggctttcccaggtcatcaacacttgtgtgatt
actgttagtacgagggtgccccagggtgtcaggtttcatttgctttgtca
cggatacaattttgaactagcttggtgaagacatgtttggtacaagtgga
ggcacagccagcaaacacagaggtttggacaaggctgcatctcttcctgg
agatttagatgcagttaatagttgctagcagtgggtgtggggtatctggg
gacacaaaataagacatgaaagtagaatgacaattgggaagaggaaggtg
gtcagtgggataggaacaggggagagtaatagggtgaatataatcaaaac
atcatatacgttatgaaaatatgttaatacagcccattattatatataat
taaatactttaataaagaacacagtggtttgggactaaaacggggcaatg
gattcccctgaaatagcccccgaggggcagaactactgctgttcctatga
agaccttgaatcatcttggaaatataaaggtctttgagttctccttgatt
caaatacatttggaagtttacacacaagatggctaaactagggcaaaatt
agctcctacatatcataggccttaattagctgggggaaacacctggatgg
aagagagaccagattaattacatgatcccctaagtaggtccacattgcag
agacccctgtggaatcccacaagtagaactgcagattcggtttgtaatct
cagaggtgggggtatgggggaaagacggagggagaaactggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_89703316_89704314
seq2: B6Ng01-100B08.b_48_1045 (reverse)

seq1  CACACACAATCCTGTTGCTCCCTTTCTGGATAAAAGCAGTTCCATC-TCC  49
      |||||||||||||| |||||||||||| |||||||||||||||||| |||
seq2  CACACACAATCCTG-TGCTCCCTTTCT-GATAAAAGCAGTTCCATCTTCC  48

seq1  TGCCTACTGGGGCTAGGCTATAATTGATTTTTCTAATTGCATACTTTTGA  99
      ||| || |||||||||||||||||||| |||||||||||||||| |||||
seq2  TGCTTATTGGGGCTAGGCTATAATTGA-TTTTCTAATTGCATAC-TTTGA  96

seq1  AAGATACTCATACTGAAGTCATCACTTCCTGTCCACCGTGATTG-AGC-A  147
      |||||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  AAGATACTCATACTGAAGTCATCACTTCCTGTCCACCGTGATTGAAGCAA  146

seq1  GCTCCTGCTGCCATAGAGTTCACCAGCCCAGAAACAATGGCACCAAACCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGCTGCCATAGAGTTCACCAGCCCAGAAACAATGGCACCAAACCC  196

seq1  CATGAGCTCAAACCACTGAAACTGTGAGTGAGAATGTACCCTGAAGACTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCTCAAACCACTGAAACTGTGAGTGAGAATGTACCCTGAAGACTG  246

seq1  TGCTCCTGAAGTCTCAGATGGAGGATGTTGGCAACAGAAAGAGAGGATGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGAAGTCTCAGATGGAGGATGTTGGCAACAGAAAGAGAGGATGG  296

seq1  GGGCTGAAGTCCCACCACCCCTCTAAAGACCTGTCCCAGTGACTCCATCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAAGTCCCACCACCCCTCTAAAGACCTGTCCCAGTGACTCCATCC  346

seq1  CTTAAAGGTTCATGACCTGTTCATAGTGCCAAGCTGGGGACCAAACCTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGGTTCATGACCTGTTCATAGTGCCAAGCTGGGGACCAAACCTTT  396

seq1  AACACACGGGCATTCCAACCTGCTTCTTATTCTACTTCTATGCTTGAATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACGGGCATTCCAACCTGCTTCTTATTCTACTTCTATGCTTGAATT  446

seq1  ATTAGTTCTTCACTAACAAACTTCTTTTCATAATAAAACTTTTTGTCCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTCTTCACTAACAAACTTCTTTTCATAATAAAACTTTTTGTCCTT  496

seq1  TGTATCATGTCACAGATACCATTGTTTTATTTTTCATTCCAACCTCCCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCATGTCACAGATACCATTGTTTTATTTTTCATTCCAACCTCCCCA  546

seq1  AAAAGGAAAATGTTTACTATAGAAAATTAGAAATGAAAAAAAATTACTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAATGTTTACTATAGAAAATTAGAAATGAAAAAAAATTACTTT  596

seq1  TAACTATTTTTTTTGAGTGAACTCCTTTTCCTCTCGTTATAAACACCTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATTTTTTTTGAGTGAACTCCTTTTCCTCTCGTTATAAACACCTAT  646

seq1  ATGATGAATGAGTATAATAAAAGTCAAAAAAAAAAAAACAGAAATATTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAATGAGTATAATAAAAGTCAAAAAAAAAAAAACAGAAATATTGT  696

seq1  TACTCAGAGCTCAATGGTTGTGTGCTTCTCTGACACATGGGAGATCTTAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGAGCTCAATGGTTGTGTGCTTCTCTGACACATGGGAGATCTTAG  746

seq1  GTTCACTGCAATGATTCACACATGTCCTGTGTGTCATTACTGTATGTCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTGCAATGATTCACACATGTCCTGTGTGTCATTACTGTATGTCCA  796

seq1  CTTCAGCTGCTGCTGCATTGAGTGGTGAGCAGGCTTGTCCCTCAATGATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTGCTGCTGCATTGAGTGGTGAGCAGGCTTGTCCCTCAATGATT  846

seq1  AAAACTTTATTATCTTATTTCGCCTCGTGAAATTCATTATTTTTCTTTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTATTATCTTATTTCGCCTCGTGAAATTCATTATTTTTCTTTTT  896

seq1  TGCATTGCAAAACACCCTAGAGGGGCATGGTTTTACGGTATGTTTGGAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGCAAAACACCCTAGAGGGGCATGGTTTTACGGTATGTTTGGAGC  946

seq1  ATTTTAAAATTTCTCATTCTTGAGTATCTCTGTGGTAACTAGTTAAGAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAATTTCTCATTCTTGAGTATCTCTGTGGTAACTAGTTAAGAAT  996

seq1  TC  999
      ||
seq2  TC  998

seq1: chr7_89597644_89598437
seq2: B6Ng01-100B08.g_70_863

seq1  GAATTCATAACTTAAAAAGGCTTTCCCAGGTCATCAACACTTGTGTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACTTAAAAAGGCTTTCCCAGGTCATCAACACTTGTGTGATT  50

seq1  ACTGTTAGTACGAGGGTGCCCCAGGGTGTCAGGTTTCATTTGCTTTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAGTACGAGGGTGCCCCAGGGTGTCAGGTTTCATTTGCTTTGTCA  100

seq1  CGGATACAATTTTGAACTAGCTTGGTGAAGACATGTTTGGTACAAGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATACAATTTTGAACTAGCTTGGTGAAGACATGTTTGGTACAAGTGGA  150

seq1  GGCACAGCCAGCAAACACAGAGGTTTGGACAAGGCTGCATCTCTTCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGCCAGCAAACACAGAGGTTTGGACAAGGCTGCATCTCTTCCTGG  200

seq1  AGATTTAGATGCAGTTAATAGTTGCTAGCAGTGGGTGTGGGGTATCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAGATGCAGTTAATAGTTGCTAGCAGTGGGTGTGGGGTATCTGGG  250

seq1  GACACAAAATAAGACATGAAAGTAGAATGACAATTGGGAAGAGGAAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAAATAAGACATGAAAGTAGAATGACAATTGGGAAGAGGAAGGTG  300

seq1  GTCAGTGGGATAGGAACAGGGGAGAGTAATAGGGTGAATATAATCAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGGGATAGGAACAGGGGAGAGTAATAGGGTGAATATAATCAAAAC  350

seq1  ATCATATACGTTATGAAAATATGTTAATACAGCCCATTATTATATATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATACGTTATGAAAATATGTTAATACAGCCCATTATTATATATAAT  400

seq1  TAAATACTTTAATAAAGAACACAGTGGTTTGGGACTAAAACGGGGCAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACTTTAATAAAGAACACAGTGGTTTGGGACTAAAACGGGGCAATG  450

seq1  GATTCCCCTGAAATAGCCCCCGAGGGGCAGAACTACTGCTGTTCCTATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCCTGAAATAGCCCCCGAGGGGCAGAACTACTGCTGTTCCTATGA  500

seq1  AGACCTTGAATCATCTTGGAAATATAAAGGTCTTTGAGTTCTCCTTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTGAATCATCTTGGAAATATAAAGGTCTTTGAGTTCTCCTTGATT  550

seq1  CAAATACATTTGGAAGTTTACACACAAGATGGCTAAACTAGGGCAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACATTTGGAAGTTTACACACAAGATGGCTAAACTAGGGCAAAATT  600

seq1  AGCTCCTACATATCATAGGCCTTAATTAGCTGGGGGAAACACCTGGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTACATATCATAGGCCTTAATTAGCTGGGGGAAACACCTGGATGG  650

seq1  AAGAGAGACCAGATTAATTACATGATCCCCTAAGTAGGTCCACATTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGACCAGATTAATTACATGATCCCCTAAGTAGGTCCACATTGCAG  700

seq1  AGACCCCTGTGGAATCCCACAAGTAGAACTGCAGATTCGGTTTGTAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCTGTGGAATCCCACAAGTAGAACTGCAGATTCGGTTTGTAATCT  750

seq1  CAGAGGTGGGGGTATGGGGGAAAGACGGAGGGAGAAACTGGGGT  794
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTGGGGGTATGGGGGAAAGACGGAGGGAGAAACTGGGGT  794