BAC Information

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BAC

Clone NameB6Ng01-100P17
Chromosome7 (Build37)
Map Location 7,632,827 - 7,812,113
singlet/doubletdoublet
Overlap geneLOC100042636, LOC665485, EG625353, Vmn2r-ps40
Upstream geneZim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368
Downstream geneVmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100P17.bB6Ng01-100P17.g
ACCDH910311DH910312
length1,1461,050
definitionDH910311|Mus musculus domesticus DNA, BAC clone: B6Ng01-100P17, 5' end.DH910312|Mus musculus domesticus DNA, BAC clone: B6Ng01-100P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,810,966 - 7,812,113)(7,632,827 - 7,633,882)
sequence
gaattcaaatattaacgtgactaaatattttttggaaaatggagtgactt
tttattttattggaaataaagaacaaagcatggcatattttctgggtctt
gttgagcctttaaactcaatctttaccatgtaaattaactgtggatatgt
gaagaatgtatgatttcagatagagctggattacctatacttgagatttg
atctgtttatagatcttcaagataatggaagcacaggtcttgtttagata
ttactatcacttctgtaacatagtccacactgtacatggtctgtggatct
cagtgactgtaaacatgagtctgcctctgcatgacttggactgtgtaata
aagtgtcctgtatgtcctcagtagctccagttttgctatttctggatgtc
ttactgtgaataatgtgatacaaaccactgacatcatttctaactgtgtt
cacataagcagattgttgaaactttccagggaccaaatttgaacacaggg
gcttccttccacagattcacaaacatgactgatatcatggagactgagaa
tgaattatcctcctaagtatttacctacatgtgtttattacatgggctgt
ggacaccagttgcagagccccagggaagaaagtatttaagtttcttcagg
gctcaggagaaacctaaaaataaaatgagtcatgaatatgcaataaacct
caccattgcacaaagaaataaatgcaaggagaaatttgatgtgctgatat
gcatgactcatcacaatccacactgcccagatttaacacaggaaaaatat
gttcactttgatgggagtcttcttcttgcttaacattccacttttcatgg
ccaactttattcatcccaggtgcttttggagaataaatttgaatgaaatt
caggatgaatatttgggattaacttgtgcttttcatcctggcagtagttc
agaaaccttattgagaaagattatttcaccaagactctgatttccttgta
gttaatttgagtttcaatttgaaatgacacttcagtacttcttgagtgct
tcgaggatattagtcaaattctttagtctttctgtcttgttgcttagtct
gacctaagaaccaactttactttctaatacatttcaacttactttc
gaattccttttgcagtttgacattaatagtttataggcgcttcttctcat
gtttattcacatgcaaatgtggaataaattatttgtatcagtagttccag
atattctgattatcgaattgacagtttgaattatattttcaaaaataaag
tattcatagtactaaaatgggaataactgtcactcaattgtctatcacta
actcatgcttcactcactactattcatatgaggtatgatgtaggatttca
tcgtcttttcacctagctcaatttcatatgtctaattactatattgtgta
atgaaaattttgttctattatgatggcttagttttgtttaatcttgtttt
attttattattctcccatagaatcctgtcattttctaatgagtgacagaa
agtggatatgatgaaaaaggaaggaaatcggaatattaactatgatatat
ttgccagtagaactgacaattgttcacatcccaatagaaggaatgaaaac
tgtaattaggatatattatgtgagaataacaagttattttcaataaataa
aaccatcaaaattaaaaataaattcttcctgttctcagagaatgatcttt
ctgttgtgtgttgtgttcttttggtaggtgtttttgtcaagaattattcc
acacatatccatcaaatgtattgttcttgaatgacctatgttccctctta
ttaaacattatactgttttcctccatgatttaataaagaaaagttctcct
cttatatatgattgtgtcttcataccctattcaggcaacttaggattgtc
ttaaaaataaaccagttttgttgtctttgatttcatttagagaatgttaa
caaaaaagttaaattataactgaaaattatttgttgcttttgtctggttg
ctgtattgttgtacttgaggtgtgttaatagcctttattttttctgttgt
ctagtgctgtctataggttcctgggaccttctgatcatcttatgtaaaaa
gtgaatgcattctcaattactaaaaagtgatgtttctatgaataggattt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7810966_7812113
seq2: B6Ng01-100P17.b_48_1193 (reverse)

seq1  GAAAGTAGGTTTGAAAATGTA-TAGGAATTAAGGTTGGTTCTTGGTGTTC  49
      ||||||| |||   ||||||| ||| || ||| ||||||||||   | ||
seq2  GAAAGTAAGTT--GAAATGTATTAGAAAGTAAAGTTGGTTCTT--AGGTC  46

seq1  AGACTTAGCAACAGGACAG-AAGACTAAAGAATTTGACTAATATCCTCGG  98
      ||||| ||||||| ||||| ||||||||||||||||||||||||||||| 
seq2  AGACTAAGCAACAAGACAGAAAGACTAAAGAATTTGACTAATATCCTCGA  96

seq1  AGCACTCAAGAAGTACTGAAGTTGTCATTTCAATTTGAAACTCAAATTTA  148
      ||||||||||||||||||||| ||||||||||| |||||||||||||| |
seq2  AGCACTCAAGAAGTACTGAAG-TGTCATTTCAAATTGAAACTCAAATTAA  145

seq1  CTTACAGGAAATTCAGAGTCTTGGTGAAATAATCTTTCTCAAT-AGGTTT  197
      | |||| | || ||||||||||||||||||||||||||||||| ||||||
seq2  C-TACAAGGAAATCAGAGTCTTGGTGAAATAATCTTTCTCAATAAGGTTT  194

seq1  CTGAACTACTGCCAGGATG-AAAGCACAAGTTAATCCCAAATATTCATCC  246
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGAACTACTGCCAGGATGAAAAGCACAAGTTAATCCCAAATATTCATCC  244

seq1  TGAATTTCATTCAAATTTATTCTCCAAAAGCACCTGGGATGAATAAAGTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTCATTCAAATTTATTCTCCAAAAGCACCTGGGATGAATAAAGTT  294

seq1  GGCCATGAAAAGTGGAATGTTAAGCAAGAAGAAGACTCCCATCAAAGTGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGAAAAGTGGAATGTTAAGCAAGAAGAAGACTCCCATCAAAGTGA  344

seq1  ACATATTTTTCCTGTGTTAAATCTGGGCAGTGTGGATTGTGATGAGTCAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTTCCTGTGTTAAATCTGGGCAGTGTGGATTGTGATGAGTCAT  394

seq1  GCATATCAGCACATCAAATTTCTCCTTGCATTTATTTCTTTGTGCAATGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCAGCACATCAAATTTCTCCTTGCATTTATTTCTTTGTGCAATGG  444

seq1  TGAGGTTTATTGCATATTCATGACTCATTTTATTTTTAGGTTTCTCCTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTTATTGCATATTCATGACTCATTTTATTTTTAGGTTTCTCCTGA  494

seq1  GCCCTGAAGAAACTTAAATACTTTCTTCCCTGGGGCTCTGCAACTGGTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAAGAAACTTAAATACTTTCTTCCCTGGGGCTCTGCAACTGGTGT  544

seq1  CCACAGCCCATGTAATAAACACATGTAGGTAAATACTTAGGAGGATAATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCCCATGTAATAAACACATGTAGGTAAATACTTAGGAGGATAATT  594

seq1  CATTCTCAGTCTCCATGATATCAGTCATGTTTGTGAATCTGTGGAAGGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCAGTCTCCATGATATCAGTCATGTTTGTGAATCTGTGGAAGGAA  644

seq1  GCCCCTGTGTTCAAATTTGGTCCCTGGAAAGTTTCAACAATCTGCTTATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGTGTTCAAATTTGGTCCCTGGAAAGTTTCAACAATCTGCTTATG  694

seq1  TGAACACAGTTAGAAATGATGTCAGTGGTTTGTATCACATTATTCACAGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAGTTAGAAATGATGTCAGTGGTTTGTATCACATTATTCACAGT  744

seq1  AAGACATCCAGAAATAGCAAAACTGGAGCTACTGAGGACATACAGGACAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCCAGAAATAGCAAAACTGGAGCTACTGAGGACATACAGGACAC  794

seq1  TTTATTACACAGTCCAAGTCATGCAGAGGCAGACTCATGTTTACAGTCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTACACAGTCCAAGTCATGCAGAGGCAGACTCATGTTTACAGTCAC  844

seq1  TGAGATCCACAGACCATGTACAGTGTGGACTATGTTACAGAAGTGATAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCCACAGACCATGTACAGTGTGGACTATGTTACAGAAGTGATAGT  894

seq1  AATATCTAAACAAGACCTGTGCTTCCATTATCTTGAAGATCTATAAACAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTAAACAAGACCTGTGCTTCCATTATCTTGAAGATCTATAAACAG  944

seq1  ATCAAATCTCAAGTATAGGTAATCCAGCTCTATCTGAAATCATACATTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATCTCAAGTATAGGTAATCCAGCTCTATCTGAAATCATACATTCT  994

seq1  TCACATATCCACAGTTAATTTACATGGTAAAGATTGAGTTTAAAGGCTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATATCCACAGTTAATTTACATGGTAAAGATTGAGTTTAAAGGCTCA  1044

seq1  ACAAGACCCAGAAAATATGCCATGCTTTGTTCTTTATTTCCAATAAAATA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACCCAGAAAATATGCCATGCTTTGTTCTTTATTTCCAATAAAATA  1094

seq1  AAAAGTCACTCCATTTTCCAAAAAATATTTAGTCACGTTAATATTTGAAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCACTCCATTTTCCAAAAAATATTTAGTCACGTTAATATTTGAAT  1144

seq1  TC  1148
      ||
seq2  TC  1146

seq1: chr7_7632827_7633882
seq2: B6Ng01-100P17.g_68_1117

seq1  GAATTCCTTTTGCAGTTTGACATTAATAGTTTATAGGCGCTTCTTCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTGCAGTTTGACATTAATAGTTTATAGGCGCTTCTTCTCAT  50

seq1  GTTTATTCACATGCAAATGTGGAATAAATTATTTGTATCAGTAGTTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCACATGCAAATGTGGAATAAATTATTTGTATCAGTAGTTCCAG  100

seq1  ATATTCTGATTATCGAATTGACAGTTTGAATTATATTTTCAAAAATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGATTATCGAATTGACAGTTTGAATTATATTTTCAAAAATAAAG  150

seq1  TATTCATAGTACTAAAATGGGAATAACTGTCACTCAATTGTCTATCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATAGTACTAAAATGGGAATAACTGTCACTCAATTGTCTATCACTA  200

seq1  ACTCATGCTTCACTCACTACTATTCATATGAGGTATGATGTAGGATTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGCTTCACTCACTACTATTCATATGAGGTATGATGTAGGATTTCA  250

seq1  TGGTCTTTTCACCTAGCTCAATTTCATATGTCTAATTACTATATTGTGTA  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTTTTCACCTAGCTCAATTTCATATGTCTAATTACTATATTGTGTA  300

seq1  ATGAAAATTTTGTTCTATTATGATGGCTTAGTTTTGTTTAATCTTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATTTTGTTCTATTATGATGGCTTAGTTTTGTTTAATCTTGTTTT  350

seq1  ATTTTATTATTCTCCCATAGAATCCTGTCATTTTCTAATGAGTGACAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTATTCTCCCATAGAATCCTGTCATTTTCTAATGAGTGACAGAA  400

seq1  AGTGGATATGATGAAAAAGGAAGGAAATAGGAATATTAACTATGATATAT  450
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTGGATATGATGAAAAAGGAAGGAAATCGGAATATTAACTATGATATAT  450

seq1  TTGCCAGTAGAACTGACAATTGTTCACATCCCAATAGAAGGAATGAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGTAGAACTGACAATTGTTCACATCCCAATAGAAGGAATGAAAAC  500

seq1  TGTAATTAGGATATATTATGTGAGAATAACAAGTTATTTTCAATAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTAGGATATATTATGTGAGAATAACAAGTTATTTTCAATAAATAA  550

seq1  AACCATCAAAATTAAAAATAAATTCTTCCTGTTCTCAGAGAATGATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCAAAATTAAAAATAAATTCTTCCTGTTCTCAGAGAATGATCTTT  600

seq1  CTGTTGTGTGTTGTGTTTTTTTGGTAGGTGTTTTTGTCAAGAATTATTCC  650
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGTTGTGTGTTGTGTTCTTTTGGTAGGTGTTTTTGTCAAGAATTATTCC  650

seq1  ACACATATCCATCAAATGTATTGTTCTTGAATGACCTGTGTTCCCTCTTA  700
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACACATATCCATCAAATGTATTGTTCTTGAATGACCTATGTTCCCTCTTA  700

seq1  TTAAACATTATACTGTTTTCCTCCATGATTTAATAAAGAAAAGTTCTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATTATACTGTTTTCCTCCATGATTTAATAAAGAAAAGTTCTCCT  750

seq1  TTTATATATGATTGTGTCTTCATACCCTATTCAGGCAACTTAGGATTGTC  800
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATATGATTGTGTCTTCATACCCTATTCAGGCAACTTAGGATTGTC  800

seq1  TTAAAAATAAACCAGTTTTGTTGTCTTTGATTTCATTTAGAGAATGTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAAACCAGTTTTGTTGTCTTTGATTTCATTTAGAGAATGTTAA  850

seq1  CAAAAAAGTTAAATTATAACTGAAAATTATTTGTTGCTTTTGTCTGGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGTTAAATTATAACTGAAAATTATTTGTTGCTTTTGTCTGGTTG  900

seq1  CTGTTATTGCTGTACTTGAGGTGTGTTAATAGCCTTTATTTTTTCTGTTG  950
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTG-TATTGTTGTACTTGAGGTGTGTTAATAGCCTTTATTTTTTCTGTTG  949

seq1  TTCTAGTGCTGTCTATAGGTTCCTTTGACCTTCTGATCATCTTATGTAAA  1000
       |||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  -TCTAGTGCTGTCTATAGGTTCCTGGGACCTTCTGATCATCTTATGTAAA  998

seq1  AGAGTGAATGCATTCTTCAAATTTACTAAAAAGTGATGTTTCTATGAATA  1050
      | ||||||||||||| ||||  ||||||||||||||||||||||||||||
seq2  A-AGTGAATGCATTC-TCAA--TTACTAAAAAGTGATGTTTCTATGAATA  1044

seq1  TGATTT  1056
       |||||
seq2  GGATTT  1050