BAC Information

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BAC

Clone NameB6Ng01-102F10
Chromosome7 (Build37)
Map Location 122,968,408 - 123,059,296
singlet/doubletdoublet
Overlap geneSox6, LOC100042779
Upstream geneInsc, EG627967, LOC668472
Downstream gene1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102F10.bB6Ng01-102F10.g
ACCDH911260DH911261
length1,1561,172
definitionDH911260|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F10, 5' end.DH911261|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,058,116 - 123,059,296)(122,968,408 - 122,969,611)
sequence
gaattcttgttatgtatttttctattgtacttctcttttagtaaaacatg
atatacttgaaggctattaatttcctgtttttacttttagtgtttatcta
catctttgtttgtaaagtaccagtaggcaacattctgagagtttgtcatt
tggagtaacttatctgataggaaccatgttatagatggttcttaggaaac
ttcccaagtctcattacctcatcctgtattacgaaacttcatagaaacct
actgttaaatggtcaaacactcttactttaaagtctagctttcataacat
tcttctgatagtgtctggtagaacatctgactagagcttcctgcactccc
tagtaaggagcaatgagggtaaactccctttgagatggaattgggatgtc
agggctgcctcataaccattctgtgcaaagagagtaattgggtaccctag
ctgaggagcagggatgggtggcctgggatcccggagtagagacagatatc
tgtttatgcacagtgggcatctaattggagggctctgtagtttgaagatg
aagagagagcagtgcttaagctcacatttaagatgttcagagaaggggga
tacaacacttcgcttcatttgtgcacccacagaagccaggtatttgtatg
ataggtcttatacttagcctgtgcctcctccactatggattctttgtctt
taaacatcagcactggtgagagtgaagctttgaacagtcttggaaaacat
tatttatcaagtcttctgtgagataaagtcggcatgcacataggaagtgg
ctgaagttgactgggaattaaatattccttaatagatgatcaactgagag
ctgtagctcattactgtttaaccacagtgcatccgtaacagcactgacag
ctttggtggcatccgaaacatctgaatttcccgagttttgaatcatgctt
actcctttcattttcgatatggaaattatatttatttttatgccaagtgg
ggtagtatgaggagagaagcagaacagggctgcattataaactcatgatg
aagtgctagtatagaaacagtgaggagtttagataaaacagtagaaagat
tgtagttcggaagatatgcatcagctcaagtgcaggccaaccagtgctgg
ctctta
gaattctcctgtctatggaacctgaatttttgtgaaaacaatcaagcatt
gttgaaagaaagaaaagcaactttgacagatgaaatatagaggggcccct
tttaggcaaacagtaaacaaagcgccattcaggccaggtccgttctgtca
tttataaagatagctccttctgtgtgtgagagtttacagcaaagagttca
gattcaacaaatcaagtgtaaaatcgcccacagtccccactagaaaagcc
tgctaggaaaagacaggaatgccaaagagaaaaatatcacagttttttct
gtgtggtagagaggacacaatgggtagatggggtgaaagggctctaagag
aagtctgagagacaagccaaaaatctaacaattgttaattataaagggct
aattttgtcagagacaggaaaagagaaggacactggagatcactcaatag
aaatatgaaaggaagaagccattctccatcattgttggagaactatgtct
ctctttctccaggctggacctcatgaggtcatcattggcacgaaagcctc
gaaaccttgggcttggttctactctagtttggccatctggaatgccagca
cacagtgcagtactttctccaaagtatcttaattcctctttccaaaaata
ggcaccctggccagctttagtcacccaaactggaaaatgtacagcagaga
atgaaatgaaaagcatttttgtttcctcgccctcctcaaccagagctgag
atttcagggtgggggagtcaggaaaaggagctccaaacactgaagctctg
acttacagagcctgtttctgctaagcaaacggtcgccaatcgtttggcaa
gtattaccaacctgagtttgggacatctaagagactcttagacacacatg
tccttgcagccaacacagtcattgttaagggattttttttagagtagaag
aaaaaaaaagtccagttaaatcaatgacacaggacttgcacatcatttgg
aaagcatgtataaattacttggttttgctacacccagctaagcacagctc
tgctgcgtgtactatctggatcaacagccacactagcaatatgctaggag
atgcaaatatacagattcctaattagacacctaccggttatttgcccacg
aatccgtataactagctacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_123058116_123059296
seq2: B6Ng01-102F10.b_45_1200 (reverse)

seq1  TAAGAGCAAGCACCTGGTTTGGCCTGCACTTTGAGCTGATGCATATCCTT  50
      ||||||| |||| |||| ||||||||||| ||||||||||||||||| | 
seq2  TAAGAGCCAGCA-CTGG-TTGGCCTGCAC-TTGAGCTGATGCATATCTTC  47

seq1  CGGGAACTAC-ATCTTTCTAACTGTTTTATCTATAACTCCCTCAACTGTT  99
      |  ||||||| |||||||| ||||||||||||| |||| |||| |||| |
seq2  C--GAACTACAATCTTTCT-ACTGTTTTATCTA-AACT-CCTC-ACTG-T  90

seq1  TTCTATACTAGCAACTTCAATCCAATGAGTTTATTAAATGCCAGCCCTTG  149
      |||||||||||| ||||| |||  ||||||||||  |||| |||||| ||
seq2  TTCTATACTAGC-ACTTC-ATC--ATGAGTTTAT--AATG-CAGCCC-TG  132

seq1  TTCCTGCTTCTCCTTCCCTCATACTACCCCCACTTGGCAATAAAAATAAA  199
      || |||||||||    |||||||||| ||||||||||| |||||||||||
seq2  TT-CTGCTTCTC---TCCTCATACTA-CCCCACTTGGC-ATAAAAATAAA  176

seq1  TATAATTTTCCATATCGAAAATGAAAGGAGTAAGCATGATTCAAAACTCG  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAA-TTTCCATATCGAAAATGAAAGGAGTAAGCATGATTCAAAACTCG  225

seq1  GGAAATTCAGATGTTTTCGGATGCCACCAAAGCTGTCAGTGCTGTTACGG  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGAAATTCAGATG-TTTCGGATGCCACCAAAGCTGTCAGTGCTGTTACGG  274

seq1  ATGCACTGTGGTTAAACAGTAATGAGCTACAGCTCTCAGTTGATCATCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTGTGGTTAAACAGTAATGAGCTACAGCTCTCAGTTGATCATCTA  324

seq1  TTAAGGAATATTTAATTCCCAGTCAACTTCAGCCACTTCCTATGTGCATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAATATTTAATTCCCAGTCAACTTCAGCCACTTCCTATGTGCATG  374

seq1  CCGACTTTATCTCACAGAAGACTTGATAAATAATGTTTTCCAAGACTGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTTTATCTCACAGAAGACTTGATAAATAATGTTTTCCAAGACTGTT  424

seq1  CAAAGCTTCACTCTCACCAGTGCTGATGTTTAAAGACAAAGAATCCATAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTCACTCTCACCAGTGCTGATGTTTAAAGACAAAGAATCCATAG  474

seq1  TGGAGGAGGCACAGGCTAAGTATAAGACCTATCATACAAATACCTGGCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGGCACAGGCTAAGTATAAGACCTATCATACAAATACCTGGCTT  524

seq1  CTGTGGGTGCACAAATGAAGCGAAGTGTTGTATCCCCCTTCTCTGAACAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTGCACAAATGAAGCGAAGTGTTGTATCCCCCTTCTCTGAACAT  574

seq1  CTTAAATGTGAGCTTAAGCACTGCTCTCTCTTCATCTTCAAACTACAGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATGTGAGCTTAAGCACTGCTCTCTCTTCATCTTCAAACTACAGAG  624

seq1  CCCTCCAATTAGATGCCCACTGTGCATAAACAGATATCTGTCTCTACTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAATTAGATGCCCACTGTGCATAAACAGATATCTGTCTCTACTCC  674

seq1  GGGATCCCAGGCCACCCATCCCTGCTCCTCAGCTAGGGTACCCAATTACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCCAGGCCACCCATCCCTGCTCCTCAGCTAGGGTACCCAATTACT  724

seq1  CTCTTTGCACAGAATGGTTATGAGGCAGCCCTGACATCCCAATTCCATCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCACAGAATGGTTATGAGGCAGCCCTGACATCCCAATTCCATCT  774

seq1  CAAAGGGAGTTTACCCTCATTGCTCCTTACTAGGGAGTGCAGGAAGCTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGAGTTTACCCTCATTGCTCCTTACTAGGGAGTGCAGGAAGCTCT  824

seq1  AGTCAGATGTTCTACCAGACACTATCAGAAGAATGTTATGAAAGCTAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATGTTCTACCAGACACTATCAGAAGAATGTTATGAAAGCTAGAC  874

seq1  TTTAAAGTAAGAGTGTTTGACCATTTAACAGTAGGTTTCTATGAAGTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTAAGAGTGTTTGACCATTTAACAGTAGGTTTCTATGAAGTTTC  924

seq1  GTAATACAGGATGAGGTAATGAGACTTGGGAAGTTTCCTAAGAACCATCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACAGGATGAGGTAATGAGACTTGGGAAGTTTCCTAAGAACCATCT  974

seq1  ATAACATGGTTCCTATCAGATAAGTTACTCCAAATGACAAACTCTCAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATGGTTCCTATCAGATAAGTTACTCCAAATGACAAACTCTCAGAA  1024

seq1  TGTTGCCTACTGGTACTTTACAAACAAAGATGTAGATAAACACTAAAAGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTACTGGTACTTTACAAACAAAGATGTAGATAAACACTAAAAGT  1074

seq1  AAAAACAGGAAATTAATAGCCTTCAAGTATATCATGTTTTACTAAAAGAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGGAAATTAATAGCCTTCAAGTATATCATGTTTTACTAAAAGAG  1124

seq1  AAGTACAATAGAAAAATACATAACAAGAATTC  1181
      ||||||||||||||||||||||||||||||||
seq2  AAGTACAATAGAAAAATACATAACAAGAATTC  1156

seq1: chr7_122968408_122969611
seq2: B6Ng01-102F10.g_69_1240

seq1  GAATTCTCCTGTCTATGGAACCTGAATTTTTGTGAAAACAATCAAGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGTCTATGGAACCTGAATTTTTGTGAAAACAATCAAGCATT  50

seq1  GTTGAAAGAAAGAAAAGCAACTTTGACAGATGAAATATAGAGGGGCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAGAAAGAAAAGCAACTTTGACAGATGAAATATAGAGGGGCCCCT  100

seq1  TTTAGGCAAACAGTAAACAAAGCGCCATTCAGGCCAGGTCCGTTCTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCAAACAGTAAACAAAGCGCCATTCAGGCCAGGTCCGTTCTGTCA  150

seq1  TTTATAAAGATAGCTCCTTCTGTGTGTGAGAGTTTACAGCAAAGAGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAGATAGCTCCTTCTGTGTGTGAGAGTTTACAGCAAAGAGTTCA  200

seq1  GATTCAACAAATCAAGTGTAAAATCGCCCACAGTCCCCACTAGAAAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAACAAATCAAGTGTAAAATCGCCCACAGTCCCCACTAGAAAAGCC  250

seq1  TGCTAGGAAAAGACAGGAATGCCAAAGAGAAAAATATCACAGTTTTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGAAAAGACAGGAATGCCAAAGAGAAAAATATCACAGTTTTTTCT  300

seq1  GTGTGGTAGAGAGGACACAATGGGTAGATGGGGTGAAAGGGCTCTAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTAGAGAGGACACAATGGGTAGATGGGGTGAAAGGGCTCTAAGAG  350

seq1  AAGTCTGAGAGACAAGCCAAAAATCTAACAATTGTTAATTATAAAGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGAGAGACAAGCCAAAAATCTAACAATTGTTAATTATAAAGGGCT  400

seq1  AATTTTGTCAGAGACAGGAAAAGAGAAGGACACTGGAGATCACTCAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTCAGAGACAGGAAAAGAGAAGGACACTGGAGATCACTCAATAG  450

seq1  AAATATGAAAGGAAGAAGCCATTCTCCATCATTGTTGGAGAACTATGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGAAAGGAAGAAGCCATTCTCCATCATTGTTGGAGAACTATGTCT  500

seq1  CTCTTTCTCCAGGCTGGACCTCATGAGGTCATCATTGGCACGAAAGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTCCAGGCTGGACCTCATGAGGTCATCATTGGCACGAAAGCCTC  550

seq1  GAAACCTTGGGCTTGGTTCTACTCTAGTTTGGCCATCTGGAATGCCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTGGGCTTGGTTCTACTCTAGTTTGGCCATCTGGAATGCCAGCA  600

seq1  CACAGTGCAGTACTTTCTCCAAAGTATCTTAATTCCTCTTTCCAAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCAGTACTTTCTCCAAAGTATCTTAATTCCTCTTTCCAAAAATA  650

seq1  GGCACCCTGGCCAGCTTTAGTCACCCAAACTGGAAAATGTACAGCAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCTGGCCAGCTTTAGTCACCCAAACTGGAAAATGTACAGCAGAGA  700

seq1  ATGAAATGAAAAGCATTTTTGTTTCCTCGCCCTCCTCAACCAGAGCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGAAAAGCATTTTTGTTTCCTCGCCCTCCTCAACCAGAGCTGAG  750

seq1  ATTTCAGGGTGGGGGAGTCAGGAAAAGGAGCTCCAAACACTGAAGCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGGTGGGGGAGTCAGGAAAAGGAGCTCCAAACACTGAAGCTCTG  800

seq1  ACTTACAGAGCCTGTTTCTGCTAAGCAAACGGTCGCCAATCGTTTGGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAGAGCCTGTTTCTGCTAAGCAAACGGTCGCCAATCGTTTGGCAA  850

seq1  GTATTACCAACCTGAGTTTGGGACATCTAAGAGACTCTTAGACACACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACCAACCTGAGTTTGGGACATCTAAGAGACTCTTAGACACACATG  900

seq1  TCCTTGCAGCCAACACAGTCATTGTTAAGGGAATTTTTTTTAAGAGTAGA  950
      ||||||||||||||||||||||||||||||||  ||||||| ||||||||
seq2  TCCTTGCAGCCAACACAGTCATTGTTAAGGGA--TTTTTTTTAGAGTAGA  948

seq1  AGAAAAAAAAAGTCCCAGTTAAAATCAAATGACACAGGACTTGCACATCA  1000
      ||||||||||||| |||||| ||||| |||||||||||||||||||||||
seq2  AGAAAAAAAAAGT-CCAGTT-AAATC-AATGACACAGGACTTGCACATCA  995

seq1  TTTGGAAAGCATGTATAAAATTACTTGGTTTTTGCTACACCCAGCTAAAG  1050
      |||||||||||||||| ||||||||||| ||||||||||||||||| |||
seq2  TTTGGAAAGCATGTAT-AAATTACTTGG-TTTTGCTACACCCAGCT-AAG  1042

seq1  CAACAGCCTCTGCTGCCGTGTACTAATCTGGAATCAAACCAAGCCACACC  1100
      | |||| |||||||| |||||||| |||||| |||||    |||||||| 
seq2  C-ACAG-CTCTGCTG-CGTGTACT-ATCTGG-ATCAA---CAGCCACAC-  1083

seq1  TAAGCAAATAATGCTTAGGAGATGCAAAATAATACAGATTCCTTTATTTA  1150
        |||||   |||| |||||||||||||   |||||||||||  || |||
seq2  -TAGCAA--TATGC-TAGGAGATGCAAA--TATACAGATTCC--TAATTA  1125

seq1  GACTACCCAAACAGTTTATTTCACCAACGAAATCCCATAATAACTAGCTA  1200
      ||| |||   || | ||||||  || ||| |||||    |||||||||||
seq2  GAC-ACC--TACCGGTTATTT-GCCCACG-AATCC--GTATAACTAGCTA  1168

seq1  CATT  1204
      ||||
seq2  CATT  1172