BAC Information

Click to search

BAC

Clone NameB6Ng01-102G01
Chromosome7 (Build37)
Map Location 15,850,492 - 15,851,544
singlet/doubletsinglet
Overlap geneLOC235841
Upstream geneEG434123, 2810007J24Rik, EG638251, B430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742
Downstream geneEG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102G01.b
ACCDH911288
length1,035
definitionDH911288|Mus musculus domesticus DNA, BAC clone: B6Ng01-102G01, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctactcttgcctcattgatctccccttgcaccacatgtgtttctc
tttagccacattatctcggatcttcccccgcttaattgtttagaacttgc
ctgggaacccgggcacctatctactggtatgtctggctgttccaacgttc
tttcctcaccttctccagcagccggagctgaatcttcttgtgacataccc
tctggattaagcctttctcctcaactcggacctccaagattgacccacaa
ctcgcaatccacctgctccatgtgccccacaccttcagttttgagccctc
ttcctgaactcaggcccttgagtaattcgctttaccagatggccatcttt
tccaaacttgatcctgtcggtgaaatctataaaaagaatagcacgtctaa
caatctcaggaaggagacgaagaagaacacggtgcaaaatttgatggatg
gcctggattcctgtgaaataactgaaaggcctaaaggcactgtctctctg
ccaagctctgcctatcaggataccttggctgagagactgactgtgttcag
ttctcctccatgcatcccatcgagtacatctccagactctgaatccatat
tttctgcatgggaggaaatatgtcatgtcactgttcctcctcctttctcc
caagtatgttctcagacccagagtcaaccttgtccattattcacattaat
gagaatttattaaatgatgccatgatgtctcattatgctgattgaaaacc
accaacaggggagagtacggtctgtcaatatcattctgtgcactatctgc
acaaccagcagcagatcaagatccagcaatagcccaaactccacattcct
gttagctttgacatctggaagacaagggagaccatagctcagtctcgctc
tcagtgttaagaccatactgctatacaagacaactcttccctgtacatct
caatgattcgattctgtccgaaccaagtgtactgttgactccctgtacac
atctgaacttggcagcatctataactgttgatccg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_15850492_15851544
seq2: B6Ng01-102G01.b_42_1076

seq1  GAATTCAACTCTTCCCTCATTGATCAACCCTTGGAAGACATGTGTTTCAG  50
      |||||| |||||| |||||||||||  |||||| |  |||||||||||  
seq2  GAATTCTACTCTTGCCTCATTGATCTCCCCTTGCACCACATGTGTTTC-T  49

seq1  CAAGAGCCACATTATCTCGGAGCATCCAAGGCAGAAGTGTAGAGAACTTT  100
      |   ||||||||||||||||| | |||   ||  || |||  ||||||| 
seq2  CTTTAGCCACATTATCTCGGATCTTCCCCCGCTTAATTGTTTAGAACTTG  99

seq1  CCAGGGAACCGGGGCACCTATCTAGTGATAGGTCTGGCTGTTCCAACGTT  150
      || ||||||| ||||||||||||| || || |||||||||||||||||||
seq2  CCTGGGAACCCGGGCACCTATCTACTGGTATGTCTGGCTGTTCCAACGTT  149

seq1  CTTTCCTCACCTTCTCCAGCAGCCGGTGCTGAATCTTCGTGTGACATACC  200
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  CTTTCCTCACCTTCTCCAGCAGCCGGAGCTGAATCTTCTTGTGACATACC  199

seq1  CTCTGGATTAAGCCTTTCTCCTCAACTCGGACCTCCAAGTATGACCCAAA  250
      |||||||||||||||||||||||||||||||||||||||  ||||||| |
seq2  CTCTGGATTAAGCCTTTCTCCTCAACTCGGACCTCCAAGATTGACCCACA  249

seq1  ACTCAGAATCCACCTTCTCCATGTGCCAGACACCATCAGTTTTGAGCCCT  300
      ||||  ||||||||| |||||||||||  ||||| |||||||||||||||
seq2  ACTCGCAATCCACCTGCTCCATGTGCCCCACACCTTCAGTTTTGAGCCCT  299

seq1  CTTCCTGAACTCAGCCCCTTGAGTAATTCCCTAGACCAGATGGCCATCTT  350
      |||||||||||||| |||||||||||||| ||  ||||||||||||||||
seq2  CTTCCTGAACTCAGGCCCTTGAGTAATTCGCTTTACCAGATGGCCATCTT  349

seq1  TTCCAAAATTGATCAGGTCTGTGAAATCTATCAAAAGAATACAAGGTCTA  400
      ||||||| ||||||  ||| ||||||||||| |||||||||  | |||||
seq2  TTCCAAACTTGATCCTGTCGGTGAAATCTATAAAAAGAATAGCACGTCTA  399

seq1  AGAAGCAAAGGAAGGAGACAGAGAAGAACACGGTGCAAAATTTGATGCAT  450
      | || |  |||||||||||  |||||||||||||||||||||||||| ||
seq2  ACAATCTCAGGAAGGAGACGAAGAAGAACACGGTGCAAAATTTGATGGAT  449

seq1  GGCCAGGATTCCTGTGAAATAACTGAAAGCCCTAAAGGCACTGTCTCTCT  500
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGCCTGGATTCCTGTGAAATAACTGAAAGGCCTAAAGGCACTGTCTCTCT  499

seq1  GCCAAGCTCTGCCTATCAGGATACCTTGGCTGAGAGACAGTCTGTGTTCA  550
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  GCCAAGCTCTGCCTATCAGGATACCTTGGCTGAGAGACTGACTGTGTTCA  549

seq1  GTTCTCCTCCATGCAGCCCATCAAGTACATCTCCAGACTCAGAATCCATA  600
      ||||||||||||||| |||||| ||||||||||||||||| |||||||||
seq2  GTTCTCCTCCATGCATCCCATCGAGTACATCTCCAGACTCTGAATCCATA  599

seq1  TTTTCTGCATGGGAGGAAATATGTCATGTCAGCTTTCCTCCTCCTTTCAG  650
      |||||||||||||||||||||||||||||||   ||||||||||||||  
seq2  TTTTCTGCATGGGAGGAAATATGTCATGTCACTGTTCCTCCTCCTTTC-T  648

seq1  CCCAAGTATGTTCTCAGACCCGGAGTCAACCTTGTCCATTATTCAGATTA  700
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  CCCAAGTATGTTCTCAGACCCAGAGTCAACCTTGTCCATTATTCACATTA  698

seq1  ATGAGAATTTATTAAGTGATGCCATGATGTCTCTATAGGCTGAGTGAAAC  750
      ||||||||||||||| |||||||||||||||||  || ||||| ||||| 
seq2  ATGAGAATTTATTAAATGATGCCATGATGTCTCATTATGCTGATTGAAAA  748

seq1  CCAGCAACAGGGGAGAGTACGGTCTGTCAATCATCAGTCTGTGCACTATC  800
      ||| ||||||||||||||||||||||||||| |||| |||||||||||||
seq2  CCACCAACAGGGGAGAGTACGGTCTGTCAAT-ATCATTCTGTGCACTATC  797

seq1  TGCACAACCTGCTGCAGATCAAGATCCAGCAATAGCCCAAACTCCACATT  850
      ||||||||| || |||||||||||||||||||||||||||||||||||||
seq2  TGCACAACCAGCAGCAGATCAAGATCCAGCAATAGCCCAAACTCCACATT  847

seq1  CCAGCACAGCTTTGACATCTGGGAATCCAAGGGAGACCCATTGCTCAATA  900
      || |   ||||||||||||| ||||  ||||||||| |||| ||||| | 
seq2  CCTG-TTAGCTTTGACATCT-GGAAGACAAGGGAGA-CCATAGCTCAGT-  893

seq1  CACACTCATAGGTGTTTAAGACCAGACTGCTATACAAGACCAGCTCTTCC  950
      | | ||| |  ||| ||||||||| |||||||||||||| || |||||||
seq2  CTCGCTC-TCAGTG-TTAAGACCATACTGCTATACAAGA-CAACTCTTCC  940

seq1  CTGTACATCTCAGTGACTTGGATTCTGTCCCAGACCAAGTGTCACTGTCT  1000
      |||||||||||| ||| || |||||||||| | ||||||||| ||||| |
seq2  CTGTACATCTCAATGA-TTCGATTCTGTCCGA-ACCAAGTGT-ACTGT-T  986

seq1  GACTTCCCTGAGCACTTCTGACTTGTGGATGCCATCTAAGAACTGTTGAT  1050
      ||| ||||||  ||| |||||  | |||  | ||||| | ||||||||||
seq2  GAC-TCCCTGTACACATCTGAACT-TGGCAG-CATCT-ATAACTGTTGAT  1032

seq1  CCG  1053
      |||
seq2  CCG  1035