BAC Information

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BAC

Clone NameB6Ng01-104D16
Chromosome7 (Build37)
Map Location 27,961,348 - 27,962,382
singlet/doubletsinglet
Overlap geneRab4b
Upstream geneCyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2
Downstream geneMia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104D16.bB6Ng01-104D16.g
ACCDH912590DH912591
length1,2301,038
definitionDH912590|Mus musculus domesticus DNA, BAC clone: B6Ng01-104D16, 5' end.DH912591|Mus musculus domesticus DNA, BAC clone: B6Ng01-104D16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttctcttctgggtgtctttggtgaaatttacaaggcaggagtgg
ggagtgagctctttctgaatttttatctccgtgtcctcggcacaggaagg
caggcatctctggttgtaaagtatagaaacaaaaaggctttttgctggct
atagagaacaaagagcttctttctggctgtatttttagagatcggggaaa
acaagcttgggggacatccaggggctttaccttccagggagaaacgctct
aagtcggggtctcacacttccaggctttcaggcctgtagtgtgtgtcact
actggagtggatgtagcaagccaccatgccccattttcttcctgtgaaaa
aaaaacacaaacttgaccttgttcccacgtgagtacaggatccggtccat
gctattggcctgtcataggatccttccatatcactgaagcatacatagtg
gaagtgtgaggatgccaaaagtgctcagcagctgagcatccatgggcatc
caaattataaaaatttaaaataaaaaggacatggtttaaataattttgtg
gagtacagggatataattcccccttttttattttatgaagatactgtttc
aaagttctatgggcctttccacaatgccttgttcttgaggattacaagga
gtcccagtaatacagataatattaaattattgacaaaaagtctcaaatgc
ttgactgcaatagccagtttccattatctgttttaatctgatttgggaca
cccagcccagaaaaacaatgtaggcaatgagtaattacatttttagttgt
gtctcgtgtaaagcagtcacaactagaaaggccttaaaagatgtaatagc
atagtacatattttaatttccaaaatcagaaatatgagtacctccatttg
cccattattgattagttgccaggttctcaagattaataccagtatgtggg
tacaggaaaaataatggaggacattctgggcaagtcttttcaatttgaca
tgcacattttctagaaaaatcaaattgttgttccaagctattactatttg
ggtgatgtaaggattgaggaatccttagataatggttcctgtgtaaacct
atatcgaattgggtttgcaattctgggtgtgcactggccctctcaaaaag
gagtccaggaaatctcagtatggtctttaaaggtttcctataaataagga
taccagttgtgtcctcctcaatttagagtg
gaattcactctgtagaccaggctgacctcgaactcagaaatccacctgcc
tctgcctcccaagtgctgggattaaaggcgtgcgccaccactgcctggcc
aaagtaatactcttaaaataagaaaaagagaaagaaagaaaagtgcagtg
tgctggcacttccagcagtgggtaggctggggcagcaggattgcagttca
agaccagatagtgagtccctgagtaggaaaaagacagacagacagacaga
cagcagtgggtaggctggggcagcaggattgcagttcaagaccagatagt
gagtccctgagtaggaaaaagacagacagacagacagacagacaggaagg
aaggaagaaagtagaggatggcagcacagtcttttagaggctgaggtagg
aggagtgcttggagtttgaggacagcgaggttagtctggaatacatagtg
aagctttgtttcgaatatcagtaataataatgaaaaaagaaaaaagagtc
ctcttgagcccagtagtggtgcacacctttaatcccagcgcccaggaggg
cagaagaggcaggggaatctttgagtttcaggccagcctagtctacaaag
tgagttccaggacagccagggctatacagagaaaccctgtctcaaaaaaa
aaaaaaaaaaaaaaaaaaatatcatcttgggctaggttggctagcatgca
ggatttctcaagttctatcaacagccctgcagacttctggatttttttct
tttttaagttttcctgttttctttttctttctttcttttctttttttaaa
tgcatgctgtatttatactttgtgtaaaagtatactttttttattaatta
tacataagtacactctagctgtcttcagacacaccagaagagggcatcag
gatctcatttacagatgggttgtggagccaccatgtgggtgctggggatt
tgaactcaggaacttctggagaacagttagtgctcttacctgctgagcat
cttacaagcccaaaagtatactttttggattatacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_27961348_27962382
seq2: B6Ng01-104D16.g_70_1107 (reverse)

seq1  AAAGTATAAATACAAAAAAGTATACTTTTGGGCTGGTGAGATGGCTCAGC  50
      |||||||||   | |||||||||||||||||||| || |||| |||||||
seq2  AAAGTATAA--TCCAAAAAGTATACTTTTGGGCTTGTAAGAT-GCTCAGC  47

seq1  AAGTAAGAGCACTAACTGTTCTTCCAG-AGGTCCTGAGTTCAAAT-CCCA  98
      | ||||||||||||||||||| ||||| || |||||||||||||| ||||
seq2  AGGTAAGAGCACTAACTGTTC-TCCAGAAGTTCCTGAGTTCAAATCCCCA  96

seq1  GCAACCACATGGTGGCT-CACAA-CCATCTGT-AATGAGAT-CTGATGCC  144
      ||| ||||||||||||| ||||| |||||||| |||||||| ||||||||
seq2  GCACCCACATGGTGGCTCCACAACCCATCTGTAAATGAGATCCTGATGCC  146

seq1  CTCTTCTGGTGTGTCTGAAGACAGCTAGAGTGTACTTATGTATAA-TAAT  193
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCTTCTGGTGTGTCTGAAGACAGCTAGAGTGTACTTATGTATAATTAAT  196

seq1  -AAAAAAGTATACTTTTACACAAAAGTATAAATACAGCATGCATTTAAAA  242
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAAAAAGTATACTTTTACAC-AAAGTATAAATACAGCATGCATTTAAAA  245

seq1  AAAGAAAAGAAAGAAAG-AAAAGAAAACAGGAAAACTTAAAAAAAGAAAA  291
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  AAAGAAAAGAAAGAAAGAAAAAGAAAACAGGAAAACTT-AAAAAAGAAAA  294

seq1  AAATCCAGAAGTCTGCAGGGCTGTTGATAGAACTTGGGAAATCCTGCATG  341
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAATCCAGAAGTCTGCAGGGCTGTTGATAGAACTTGAGAAATCCTGCATG  344

seq1  CTAGCCAACCTAGCCCAAGATGATTTTTTTTTTTTTTTTTTTTTTTTTTT  391
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTAGCCAACCTAGCCCAAGATGATATTTTTTTTTTTTTTTTTTTTTTTTT  394

seq1  TGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGT  444

seq1  AGACTAGGCTGGCCTGAAACTCAAAGATTCCCCTGCCTCTTCTGCCCTCC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGGCTGGCCTGAAACTCAAAGATTCCCCTGCCTCTTCTGCCCTCC  494

seq1  TGGGCGCTGGGATTAAAGGTGTGCACCACTACTGGGCTCAAGAGGACTCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGCTGGGATTAAAGGTGTGCACCACTACTGGGCTCAAGAGGACTCT  544

seq1  TTTTTCTTTTTTCATTATTATTACTGATATTCGAAACAAAGCTTCACTAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTTTCATTATTATTACTGATATTCGAAACAAAGCTTCACTAT  594

seq1  GTATTCCAGACTAACCTCGCTGTCCTCAAACTCCAAGCACTCCTCCTACC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCAGACTAACCTCGCTGTCCTCAAACTCCAAGCACTCCTCCTACC  644

seq1  TCAGCCTCTAAAAGACTGTGCTGCCATCCTCTACTTTCTTCCTTCCTTCC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCTAAAAGACTGTGCTGCCATCCTCTACTTTCTTCCTTCCTTCC  694

seq1  TGTCTGTCTGTCTGTCTGTCTGTCTTTTTCCTACTCAGGGACTCACTATC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTGTCTGTCTGTCTGTCTTTTTCCTACTCAGGGACTCACTATC  744

seq1  TGGTCTTGAACTGCAATCCTGCTGCCCCAGCCTACCCACTGCTGTCTGTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTGAACTGCAATCCTGCTGCCCCAGCCTACCCACTGCTGTCTGTC  794

seq1  TGTCTGTCTGTCTTTTTCCTACTCAGGGACTCACTATCTGGTCTTGAACT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTGTCTTTTTCCTACTCAGGGACTCACTATCTGGTCTTGAACT  844

seq1  GCAATCCTGCTGCCCCAGCCTACCCACTGCTGGAAGTGCCAGCACACTGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCTGCTGCCCCAGCCTACCCACTGCTGGAAGTGCCAGCACACTGC  894

seq1  ACTTTTCTTTCTTTCTCTTTTTCTTATTTTAAGAGTATTACTTTGGCCAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTTTCTTTCTCTTTTTCTTATTTTAAGAGTATTACTTTGGCCAG  944

seq1  GCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  994

seq1  TGGATTTCTGAGTTCGAGGTCAGCCTGGTCTACAGAGTGAATTC  1035
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCTGAGTTCGAGGTCAGCCTGGTCTACAGAGTGAATTC  1038