BAC Information

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BAC

Clone NameB6Ng01-105I15
Chromosome7 (Build37)
Map Location 51,897,008 - 52,031,018
singlet/doubletdoublet
Overlap geneMyh14, 1700023D19Rik, Zfp473, Vrk3
Upstream geneCeacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3
Downstream geneEG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105I15.bB6Ng01-105I15.g
ACCDH913534DH913535
length789566
definitionDH913534|Mus musculus domesticus DNA, BAC clone: B6Ng01-105I15, 5' end.DH913535|Mus musculus domesticus DNA, BAC clone: B6Ng01-105I15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,030,233 - 52,031,018)(51,897,008 - 51,897,579)
sequence
ttgaattgacttcaggagctgatgaaaaaccaagggtatataacaggggc
tggggcacccagtcccctcacaggcttgggtggggtgaggggctaagtga
acaacctcctcacctggattccatctaaggcaccatctggaggtccagag
ggtcatagggtgacacccgcatatcctgcagcagagcttctaggctgttc
ctcagcgtggcatagggtggcttctcctcataattgagggccatcaccac
cttcaggtactcccgcagggtctctgtggtcaagacacccaaaagcacag
gtgaggcccgagaggtggtgctcgaagccccctgtgctcagtgccactgg
gagttcttgtatctgctgtcggtgtgggaagcatcaagggagcagcagtg
gaatggtaaacaccagagtgctcagcggccagccatcaccaactctcacc
cgctgctcatcctgtactacttcccaacagattcctgagcaaacctatgg
gcacctctaacacagggcctgcaggttccagccgaggcaggaatggaatc
tgagcacagagcacataaggagccactgagcagagggaagcagtgggcat
cacatcacggtgaccgaccggcatgaatggcaggcaagccccatgtgcaa
ttagatgttctttaaacatttctttctttctttcttcctttctttctttc
tttctttctgtctgtctgtctgtctgtctgtctgtcttaataatatttta
tcttttattttatgagcattggtgtttttgcctgtaagt
aaggtcaccctcaactataaagcaagttgagggccaatctgggctacatg
agatcctacctgaccccaacactcgcaaccattgggttctagttaaaaca
taaagttattccttgaggcatgaagggaaataagcaggtttcagaaaggt
ttgtagccacgaagtggtggtacgcgcctttaatctcagtactcagcacc
gggcacccaggaggcagaggcaggcgggtctctgagtttgggggcagcct
ggtcaacagagtgagttttagaacagccagacatacacagaaaaaccctg
tctcgaacacccccatccccaacatacacaccaaaaagataaaataaaga
aaaaagaaaaacgtgtagtgtttgcccccaattaagtaaagcaaacaggt
agtgcaggacagtgccgggttggtgaatagcaccccccggtggccactag
tgggcgctgcagggctgggtgagcggggagcagtgccccagttccccaga
ttttcagagttgtgcagtttgagagtgagctggagggtttttataaccag
gacagagagcttcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52030233_52031018
seq2: B6Ng01-105I15.b_54_842 (reverse)

seq1  ACTTGCAGGC-AAAACACCAGTGCTCATAAAAT-AAAGATAAATTATT-T  47
      |||| ||||| ||||||||| |||||||||||| ||||||||| |||| |
seq2  ACTTACAGGCAAAAACACCAATGCTCATAAAATAAAAGATAAAATATTAT  50

seq1  TAAGACAGACAGACAGACAGACAGACAGACAGAAAGAAAGAAAGAAAGAA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAGACAGACAGACAGACAGACAGACAGAAAGAAAGAAAGAAAGAA  100

seq1  AGGAAGAAAGAAAGAAAGAAATGTTTAAAGAACATCTAATTGCACATGGG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAGAAAGAAAGAAATGTTTAAAGAACATCTAATTGCACATGGG  150

seq1  GCTTGCCTGCCATTCATGCCGGTCGGTCACCGTGATGTGATGCCCACTGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTGCCATTCATGCCGGTCGGTCACCGTGATGTGATGCCCACTGC  200

seq1  TTCCCTCTGCTCAGTGGCTCCTTCTGTGCTCTGTGCTCAGATTCCATTCC  247
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCCCTCTGCTCAGTGGCTCCTTATGTGCTCTGTGCTCAGATTCCATTCC  250

seq1  TGCCTCGGCTGGAACCTGCAGGCCCTGTGTTAGAGGTGCCCATAGGTTTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCGGCTGGAACCTGCAGGCCCTGTGTTAGAGGTGCCCATAGGTTTG  300

seq1  CTCAGGAATCTGTTGGGAAGTAGTACAGGATGAGCAGCGGGTGAGAGTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAATCTGTTGGGAAGTAGTACAGGATGAGCAGCGGGTGAGAGTTG  350

seq1  GTGATGGCTGGCCGCTGAGCACTCTGGTGTTTACCATTCCACTGCTGCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCTGGCCGCTGAGCACTCTGGTGTTTACCATTCCACTGCTGCTC  400

seq1  CCTTGATGCTTCCCACACCGACAGCAGATACAAGAACTCCCAGTGGCACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATGCTTCCCACACCGACAGCAGATACAAGAACTCCCAGTGGCACT  450

seq1  GAGCACAGGGGGCTTCGAGCACCACCTCTCGGGCCTCACCTGTGCTTTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGGGGGCTTCGAGCACCACCTCTCGGGCCTCACCTGTGCTTTTG  500

seq1  GGTGTCTTGACCACAGAGACCCTGCGGGAGTACCTGAAGGTGGTGATGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTTGACCACAGAGACCCTGCGGGAGTACCTGAAGGTGGTGATGGC  550

seq1  CCTCAATTATGAGGAGAAGCCACCCTATGCCACGCTGAGGAACAGCCTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATTATGAGGAGAAGCCACCCTATGCCACGCTGAGGAACAGCCTAG  600

seq1  AAGCTCTGCTGCAGGATATGCGGGTGTCACCCTATGACCCTCTGGACCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGCTGCAGGATATGCGGGTGTCACCCTATGACCCTCTGGACCTC  650

seq1  CAGATGGTGCCTTAGATGGAATCCAGGTGAGGAGGTTGTTCACTTAGCCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTGCCTTAGATGGAATCCAGGTGAGGAGGTTGTTCACTTAGCCC  700

seq1  CTCACCCCACCCAAGCCTGTGAGGGGACTGGGTGCCCCAGCCCCTGTTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCCACCCAAGCCTGTGAGGGGACTGGGTGCCCCAGCCCCTGTTAT  750

seq1  ATACCCTTGGTTTTTCATCAGCTCCTGAAGTCAATTCAA  786
      |||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTTGGTTTTTCATCAGCTCCTGAAGTCAATTCAA  789

seq1: chr7_51897008_51897579
seq2: B6Ng01-105I15.g_69_640

seq1  GAATTCAAGGTCACCCTCAACTATAAAGCAAGTTGAGGGCCAATCTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCACCCTCAACTATAAAGCAAGTTGAGGGCCAATCTGGGC  50

seq1  TACATGAGATCCTACCTGACCCCAACACTCGCAACCATTGGGTTCTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAGATCCTACCTGACCCCAACACTCGCAACCATTGGGTTCTAGTT  100

seq1  AAAACATAAAGTTATTCCTTGAGGCATGAAGGGAAATAAGCAGGTTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAAAGTTATTCCTTGAGGCATGAAGGGAAATAAGCAGGTTTCAG  150

seq1  AAAGGTTTGTAGCCACGAAGTGGTGGTACGCGCCTTTAATCTCAGTACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTGTAGCCACGAAGTGGTGGTACGCGCCTTTAATCTCAGTACTC  200

seq1  AGCACCGGGCACCCAGGAGGCAGAGGCAGGCGGGTCTCTGAGTTTGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCGGGCACCCAGGAGGCAGAGGCAGGCGGGTCTCTGAGTTTGGGGG  250

seq1  CAGCCTGGTCAACAGAGTGAGTTTTAGAACAGCCAGACATACACAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCAACAGAGTGAGTTTTAGAACAGCCAGACATACACAGAAAA  300

seq1  ACCCTGTCTCGAACACCCCCATCCCCAACATACACACCAAAAAGATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCGAACACCCCCATCCCCAACATACACACCAAAAAGATAAAA  350

seq1  TAAAGAAAAAAGAAAAACGTGTAGTGTTTGCCCCCAATTAAGTAAAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAAAGAAAAACGTGTAGTGTTTGCCCCCAATTAAGTAAAGCAA  400

seq1  ACAGGTAGTGCAGGACAGTGCCGGGTTGGTGAATAGCACCCCCCGGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGTGCAGGACAGTGCCGGGTTGGTGAATAGCACCCCCCGGTGGC  450

seq1  CACAAGTGGGCGCTGCAGGGCTGGGTGAGCGGGGAGCAGTGCCCCAGTTC  500
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTGGGCGCTGCAGGGCTGGGTGAGCGGGGAGCAGTGCCCCAGTTC  500

seq1  CCCAGATTTTCAGAGCTGTGCAGTTTGAGAGTGAGCTGGAGGGTTTTTAT  550
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCAGATTTTCAGAGTTGTGCAGTTTGAGAGTGAGCTGGAGGGTTTTTAT  550

seq1  AACCAGGACAGAGAGCTTCAGA  572
      ||||||||||||||||||||||
seq2  AACCAGGACAGAGAGCTTCAGA  572