BAC Information

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BAC

Clone NameB6Ng01-105N10
Chromosome7 (Build37)
Map Location 4,018,079 - 4,194,388
singlet/doubletdoublet
Overlap geneTtyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1
Downstream geneNcr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105N10.bB6Ng01-105N10.g
ACCDH913750DH913751
length1,196939
definitionDH913750|Mus musculus domesticus DNA, BAC clone: B6Ng01-105N10, 5' end.DH913751|Mus musculus domesticus DNA, BAC clone: B6Ng01-105N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,018,079 - 4,019,277)(4,193,450 - 4,194,388)
sequence
gaattccagatcctcttgcctttacctcctaagttctggaacagcaggtg
tgttccaccacactgtgttgtgtttatttatttatttatttatttaccca
ctgaatccaattaatgctttccaaatatccatggatataaagtcaacacg
ggtcacacccttaaagatgcatttatattaatgggaatagacagttttac
agtctgtctgttcaccactttagcatgagttatggcttggagagttactg
gctcctttatcttgtcaagtcacacttgtaagagcattggagtttcacct
gcaaagacaatctgatttgtggctgtactgaggatgcttatatatgattc
agaacgacaggagaatcaccagaaaaaaatctaatttcccttcctgactg
ttcctgaagtttggattctgaggcaagcattggcttattaaagagctact
gttcccttctctgttaacagaagaagaacttgcaactgaggagttggagg
ggtgtgcacacctgtgttccagaactgccaacaccaataaggcatcttct
acgggaggtaatattgagtcacatggtcatatgtgtctctgtattgaata
tgactgaggacttagatgtgcactgtgagacccatcttctcctaatctag
ggagctcaaagacctatgaacttcttgcactgagtggatatatgctttct
ctgcctatgcacactcagttcaaaccatagatttaggagaagtcccagga
aacgatcacgtgacttctggaattttagttttggtggtgatgcagataaa
cccagtctctccagttcctccttttaaccaaccacagtagaatctccatg
ttaagacaggagaagagacgctgtgtgttaggggaaggattttcctctgc
caggcttaaagagcaatagagtgcaatgctcccccacctcagccagaatc
cactcttgcttacacttctcagctgtggatcagcctgctggcctgtagca
cacaagccttgtgatttgagggcatgcacctgggatggtgtcatccctct
tctccccagttctttctagttggagagcaggtggtctgcatgggcaaggc
tgctcactaccacatgaaggctcccaacgcactttcttactagaattggc
ctctggaacactgtagcaggataggtataggaaatgagtgttctaa
gaattctttcaaatgcaagtttgttgattgcaagtcttctatttcaagaa
aatcacataaataacatgtgttaaaagctgagggttcaagagatgctggg
ccatcacttacattaggatctcattttgcattttggactctgatttttga
gcattatttttgctatctcagccagcttctttgttttcattagagaaaat
gaaggctcatgacgcaagtggagaatgtggtagcatataataaaggaagt
gggggggggggcaggcagaagatacacaagattaggactcaaacctgact
gatgagacaggattatcccctcctcattattggaggtggggagacagagg
agactgtcagccaaagttatacatctaggtgaagtgataacaggatgatt
ggccatagaagaattttccacccaagtacccaggtgtttccctacactca
aatcatgttttcttcctgaatgttctctgaaaatggttccctattgtagt
cccagatgttttcttccagaaccacctgagatccttggacttattcccag
gtgtctgccaccatgaaagaagcactgctttctctcccagctgcatgttg
ggtctgcctttggctgtgctgagcttcgaacagaagaacgccaagaagca
caaggaccaaaattgaagcccccatcctgatgaggttctccattgtgtaa
ttctggggctgtgagactggaggttatagaaaaagatgtcacagaggtca
gggcagatgaaagtcagtccagggagtctgcttcctctggacaggacgta
gtcgtccgtactgagacctacggttaagaattctctgtacttacctgtct
ttgggtctgatatgtttgggatggcctgaggggctgatcggcttctaaga
accaaaaggagaatgtatgatgtgtggaaatactgaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_4018079_4019277
seq2: B6Ng01-105N10.b_48_1243

seq1  GAATTCCAGATCCTCTTGCCTTTACCTCCTAAGTTCTGGAACAGCAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATCCTCTTGCCTTTACCTCCTAAGTTCTGGAACAGCAGGTG  50

seq1  TGTTCCACCACACTGTGTTGTGTTTATTTATTTATTTATTTATTTACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCACCACACTGTGTTGTGTTTATTTATTTATTTATTTATTTACCCA  100

seq1  CTGAATCCAATTAATGCTTTCCAAATATCCATGGATATAAAGTCAACACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCCAATTAATGCTTTCCAAATATCCATGGATATAAAGTCAACACG  150

seq1  GGTCACACCCTTAAAGATGCATTTATATTAATGGGAATAGACAGTTTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACACCCTTAAAGATGCATTTATATTAATGGGAATAGACAGTTTTAC  200

seq1  AGTCTGTCTGTTCACCACTTTAGCATGAGTTATGGCTTGGAGAGTTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTCTGTTCACCACTTTAGCATGAGTTATGGCTTGGAGAGTTACTG  250

seq1  GCTCCTTTATCTTGTCAAGTCACACTTGTAAGAGCATTGGAGTTTCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTTATCTTGTCAAGTCACACTTGTAAGAGCATTGGAGTTTCACCT  300

seq1  GCAAAGACAATCTGATTTGTGGCTGTACTGAGGATGCTTATATATGATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGACAATCTGATTTGTGGCTGTACTGAGGATGCTTATATATGATTC  350

seq1  AGAACGACAGGAGAATCACCAGAAAAAAATCTAATTTCCCTTCCTGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGACAGGAGAATCACCAGAAAAAAATCTAATTTCCCTTCCTGACTG  400

seq1  TTCCTGAAGTTTGGATTCTGAGGCAAGCATTGGCTTATTAAAGAGCTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAAGTTTGGATTCTGAGGCAAGCATTGGCTTATTAAAGAGCTACT  450

seq1  GTTCCCTTCTCTGTTAACAGAAGAAGAACTTGCAACTGAGGAGTTGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTTCTCTGTTAACAGAAGAAGAACTTGCAACTGAGGAGTTGGAGG  500

seq1  GGTGTGCACACCTGTGTTCCAGAACTGCCAACACCAATAAGGCATCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCACACCTGTGTTCCAGAACTGCCAACACCAATAAGGCATCTTCT  550

seq1  ACGGGAGGTAATATTGAGTCACATGGTCATATGTGTCTCTGTATTGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGAGGTAATATTGAGTCACATGGTCATATGTGTCTCTGTATTGAATA  600

seq1  TGACTGAGGACTTAGATGTGCACTGTGAGACCCATCTTCTCCTAATCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAGGACTTAGATGTGCACTGTGAGACCCATCTTCTCCTAATCTAG  650

seq1  GGAGCTCAAAGACCTATGAACTTCTTGCACTGAGTGGATATATGCTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCAAAGACCTATGAACTTCTTGCACTGAGTGGATATATGCTTTCT  700

seq1  CTGCCTATGCACACTCAGTTCAAACCATAGATTTAGGAGAAGTCCCAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTATGCACACTCAGTTCAAACCATAGATTTAGGAGAAGTCCCAGGA  750

seq1  AACGATCACGTGACTTCTGGAATTTTAGTTTTGGTGGTGATGCAGATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATCACGTGACTTCTGGAATTTTAGTTTTGGTGGTGATGCAGATAAA  800

seq1  CCCAGTCTCTCCAGTTCCTCCTTTTAACCAACCACAGTAGAATCTCCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCTCTCCAGTTCCTCCTTTTAACCAACCACAGTAGAATCTCCATG  850

seq1  TTAAGACAGGAGAAGAGACGCTGTGTGTTAGGGGAAGGATTTTCCTCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACAGGAGAAGAGACGCTGTGTGTTAGGGGAAGGATTTTCCTCTGC  900

seq1  CAGGCTTAAAGAGCAATAGAGTGCAATGCTCCCCCACCTCAGCCAGAATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTAAAGAGCAATAGAGTGCAATGCTCCCCCACCTCAGCCAGAATC  950

seq1  CACTCTTGCTTACACTTCTCAGCTGTGGATCCAGCCTGCTGGCCTGTAGC  1000
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACTCTTGCTTACACTTCTCAGCTGTGGAT-CAGCCTGCTGGCCTGTAGC  999

seq1  ACACAAGCCTTGTGATTTGAGGGCATGCACCTGGGAT-GTGTCATCCCTC  1049
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACACAAGCCTTGTGATTTGAGGGCATGCACCTGGGATGGTGTCATCCCTC  1049

seq1  TTCTCCCCCAGTCCTTCCTAAGTGGAGAAGCAGGTGGTCTGCATGGGCAA  1099
      |||| ||||||| ||| |||  ||||| ||||||||||||||||||||||
seq2  TTCT-CCCCAGTTCTTTCTAGTTGGAG-AGCAGGTGGTCTGCATGGGCAA  1097

seq1  GGGCTGGCTCAC-ACCACATGAAGGCTCCAACCGGCACTATCTTTACTAG  1148
       |||| |||||| |||||||||||||||| | | ||||| || |||||||
seq2  -GGCT-GCTCACTACCACATGAAGGCTCCCAAC-GCACTTTC-TTACTAG  1143

seq1  AATTGG-CTCTGG-ACACTGTAGCAGGTAAAGGTATAGGAAATGA-TGTT  1195
      |||||| |||||| ||||||||||||| | ||||||||||||||| ||||
seq2  AATTGGCCTCTGGAACACTGTAGCAGG-ATAGGTATAGGAAATGAGTGTT  1192

seq1  CTAA  1199
      ||||
seq2  CTAA  1196

seq1: chr7_4193450_4194388
seq2: B6Ng01-105N10.g_70_1008 (reverse)

seq1  ATTTCAAGTATTT-CACACATCCTACATTCTCCTTTTGGTTCTTAGAAGC  49
      ||||| ||||||| |||||||| |||||||||||||||||||||||||||
seq2  ATTTC-AGTATTTCCACACATCATACATTCTCCTTTTGGTTCTTAGAAGC  49

seq1  CGATCAGCCCCTCAGGCCATCACCAAACATATCAGACCCAAAGACAGGTA  99
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CGATCAGCCCCTCAGGCCATC-CCAAACATATCAGACCCAAAGACAGGTA  98

seq1  AGTACAGAGAATTCTTAACCGTAGGTCTCAGTACGGACGACTACGTCCTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGAGAATTCTTAACCGTAGGTCTCAGTACGGACGACTACGTCCTG  148

seq1  TCCAGAGGAAGCAGACT-CCTGGACTGACTTTCATCTGCCCTGACCTCTG  198
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCAGAGGAAGCAGACTCCCTGGACTGACTTTCATCTGCCCTGACCTCTG  198

seq1  TGACCTCTTTTTCTATAACCTCCAGTCTCACAGCCCCAGAATTACACAAT  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCTTTTTCTATAACCTCCAGTCTCACAGCCCCAGAATTACACAAT  248

seq1  GGAGAACCTCATCAGGATGGGGGCTTCAATTTTGGTCCTTGTGCTTCTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACCTCATCAGGATGGGGGCTTCAATTTTGGTCCTTGTGCTTCTTG  298

seq1  GCGTTCTTCTGTTCGAAGCTCAGCACAGCCAAAGGCAGACCCAACATGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTCTTCTGTTCGAAGCTCAGCACAGCCAAAGGCAGACCCAACATGCA  348

seq1  GCTGGGAGAGAAAGCAGTGCTTCTTTCATGGTGGCAGACACCTGGGAATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGAGAAAGCAGTGCTTCTTTCATGGTGGCAGACACCTGGGAATA  398

seq1  AGTCCAAGGATCTCAGGTGGTTCTGGAAGAAAACATCTGGGACTACAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAGGATCTCAGGTGGTTCTGGAAGAAAACATCTGGGACTACAATA  448

seq1  GGGAACCATTTTCAGAGAACATTCAGGAAGAAAACATGATTTGAGTGTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCATTTTCAGAGAACATTCAGGAAGAAAACATGATTTGAGTGTAG  498

seq1  GGAAACACCTGGGTACTTGGGTGGAAAATTCTTCTATGGCCAATCATCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACCTGGGTACTTGGGTGGAAAATTCTTCTATGGCCAATCATCCT  548

seq1  GTTATCACTTCACCTAGATGTATAACTTTGGCTGACAGTCTCCTCTGTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCACTTCACCTAGATGTATAACTTTGGCTGACAGTCTCCTCTGTCT  598

seq1  CCCCACCTCCAATAATGAGGAGGGGATAATCCTGTCTCATCAGTCAGGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCTCCAATAATGAGGAGGGGATAATCCTGTCTCATCAGTCAGGTT  648

seq1  TGAGTCCTAATCTTGTGTATCTTCTGCCTGCCCCCCCCCCCACTTCCTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCTAATCTTGTGTATCTTCTGCCTGCCCCCCCCCCCACTTCCTTT  698

seq1  ATTATATGCTACCACATTCTCCACTTGCGTCATGAGCCTTCATTTTCTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGCTACCACATTCTCCACTTGCGTCATGAGCCTTCATTTTCTCT  748

seq1  AATGAAAACAAAGAAGCTGGCTGAGATAGCAAAAATAATGCTCAAAAATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAACAAAGAAGCTGGCTGAGATAGCAAAAATAATGCTCAAAAATC  798

seq1  AGAGTCCAAAATGCAAAATGAGATCCTAATGTAAGTGATGGCCCAGCATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCAAAATGCAAAATGAGATCCTAATGTAAGTGATGGCCCAGCATC  848

seq1  TCTTGAACCCTCAGCTTTTAACACATGTTATTTATGTGATTTTCTTGAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAACCCTCAGCTTTTAACACATGTTATTTATGTGATTTTCTTGAAA  898

seq1  TAGAAGACTTGCAATCAACAAACTTGCATTTGAAAGAATTC  939
      |||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGACTTGCAATCAACAAACTTGCATTTGAAAGAATTC  939