BAC Information

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BAC

Clone NameB6Ng01-110G13
Chromosome7 (Build37)
Map Location 6,346,467 - 6,471,508
singlet/doubletdoublet
Overlap geneZfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349
Upstream geneV1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78
Downstream geneLOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110G13.bB6Ng01-110G13.g
ACCDH917039DH917040
length7421,027
definitionDH917039|Mus musculus domesticus DNA, BAC clone: B6Ng01-110G13, 5' end.DH917040|Mus musculus domesticus DNA, BAC clone: B6Ng01-110G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,470,700 - 6,471,508)(6,346,467 - 6,347,492)
sequence
gaattcactactgggaattgaacatgcaagccaagccctcgaacccacca
ggccacctcacagtttcattcatgatagacatcacttctagatgtggtac
tgcacagccatggtctgggactggcttaattgcaggcctatgtgaagaag
gtgggaccagcatttaccactaagttgagtgtgagaagccagcatgcagc
aaaaaaaaaaaaaaaaaaaaagaaagaaagaaaagcaagtgtgaatgtgt
gggaaattataaatatgttctaaggaaaaggagcatgaaaacactggctg
tcttcagatgctcaaaagagtacttgtgagtttcaaggtaaagttgttca
gctatctggtaaatattgattcttcacttttaatgagccaggcattgtct
taggttccggggacattgtgtaagaaaagcaaagagatacacatgcaaca
catacagctgtggaaatgtctgatgctacatgtagagcctacacatagaa
ccggctagaatgtcactctataatacccttctgcgcgcaccccccttctg
aagaaaggtgcccctctgtctgcccaagcattagaagttgaggaacaggt
ctcacttttccatttaaaacttggatccaacatcagtttttgctacagta
tctggttacagtatcaactcaaaattgccgtctggattgaatgaatgcat
gaatgaatgaatgatggatggatggatggatggatgggatgg
gaattcatactggagagaagccctataaatgcaatcagtgtgggaaggcc
ttcagtgacgggtcctccttcgcacggcaccagaggtgccatacaggcaa
gaagccgtacgagtgcccggagtgtggcaaagctttcatacagaacacct
cgctcgttcgtcactggaggtactatcacactggggagaaacccttcgat
tgcatcgactgtgggaaagccttcagtgaccacatagggcttaatcaaca
caggaggattcacactggagagaaaccatacacgtgtgaagtgtgtcaca
aatcctttaggtacggctcatccctcactgtgcaccaaaggattcatact
ggagagaaaccgtacgagtgtgagatttgcagaaaagccttcagccacca
tgcatccctcactcagcatcaacgagtgcattctggagaaaagcctttta
aatgtaaagagtgtgggaaagcttttaggcagaatatacaccttgctagt
cactggaggatccataccggggagaagccctttgagtgtggggaatgtgg
gaaatctttcagcatcagctcacagcttgccacgcatcagagaattcata
caggagagaagccttacgaatgtaaggtttgtaggaaagcatttacacag
aaggctcaccttgcacaacatcagaagactcatacgggggagaagccata
cgagtgcaaggaatgtggcaagggccttcagccagaccactcacctcatt
caacaccagagggttcatactggagagaagccctataaatgcctgggaat
gtgggaaggcctttggtgataactcatcctgtactcaacatcggagactt
cacaccgggccagaggccttacgagtgtgtggagtttgggaagacattca
gaccaagtcgtcccttttctgtcatcgtagatgtcaacacgggagagaaa
ccttatgagtgcagtgcatgtggtaaagccttaagccaccgcagtcccta
gtgtacatcagagaattcatccgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6470700_6471508
seq2: B6Ng01-110G13.b_49_790 (reverse)

seq1  CCATCCATCCATTCATCCATCCATCCATCCATCCATCCACCCACCCACCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACCCACCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCATT  100
                    |||||   ||||||||||||||||||||||||||||
seq2  --------------CCATC---CCATCCATCCATCCATCCATCCATCATT  33

seq1  CATTCATTCATGCATTCATTCAATCCAGACGGCAATTTTGAGTTGATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTCATGCATTCATTCAATCCAGACGGCAATTTTGAGTTGATACT  83

seq1  GTAACCAGATACTGTAGCAAAAACTGATGTTGGATCCAAGTTTTAAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCAGATACTGTAGCAAAAACTGATGTTGGATCCAAGTTTTAAATGG  133

seq1  AAAAGTGAGACCTGTTCCTCAACTTCTAATGCTTGGGCAGACAGAGGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGAGACCTGTTCCTCAACTTCTAATGCTTGGGCAGACAGAGGGGC  183

seq1  ACCTTTCTTCAGAAGGGGGGTGCGCGCAGAAGGGTATTATAGAGTGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTTCAGAAGGGGGGTGCGCGCAGAAGGGTATTATAGAGTGACAT  233

seq1  TCTAGCCGGTTCTATGTGTAGGCTCTACATGTAGCATCAGACATTTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCGGTTCTATGTGTAGGCTCTACATGTAGCATCAGACATTTCCAC  283

seq1  AGCTGTATGTGTTGCATGTGTATCTCTTTGCTTTTCTTACACAATGTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTATGTGTTGCATGTGTATCTCTTTGCTTTTCTTACACAATGTCCC  333

seq1  CGGAACCTAAGACAATGCCTGGCTCATTAAAAGTGAAGAATCAATATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACCTAAGACAATGCCTGGCTCATTAAAAGTGAAGAATCAATATTTA  383

seq1  CCAGATAGCTGAACAACTTTACCTTGAAACTCACAAGTACTCTTTTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAGCTGAACAACTTTACCTTGAAACTCACAAGTACTCTTTTGAGC  433

seq1  ATCTGAAGACAGCCAGTGTTTTCATGCTCCTTTTCCTTAGAACATATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGACAGCCAGTGTTTTCATGCTCCTTTTCCTTAGAACATATTTA  483

seq1  TAATTTCCCACACATTCACACTTGCTTTTCTTTCTTTCTTTTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCCCACACATTCACACTTGCTTTTCTTTCTTTCTTTTTTTTTTTT  533

seq1  TTTTTTTTTGCTGCATGCTGGCTTCTCACACTCAACTTAGTGGTAAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGCTGCATGCTGGCTTCTCACACTCAACTTAGTGGTAAATGC  583

seq1  TGGTCCCACCTTCTTCACATAGGCCTGCAATTAAGCCAGTCCCAGACCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCACCTTCTTCACATAGGCCTGCAATTAAGCCAGTCCCAGACCAT  633

seq1  GGCTGTGCAGTACCACATCTAGAAGTGATGTCTATCATGAATGAAACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGCAGTACCACATCTAGAAGTGATGTCTATCATGAATGAAACTGT  683

seq1  GAGGTGGCCTGGTGGGTTCGAGGGCTTGGCTTGCATGTTCAATTCCCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGCCTGGTGGGTTCGAGGGCTTGGCTTGCATGTTCAATTCCCAGT  733

seq1  AGTGAATTC  809
      |||||||||
seq2  AGTGAATTC  742

seq1: chr7_6346467_6347492
seq2: B6Ng01-110G13.g_68_1094

seq1  GAATTCATACTGGAGAGAAGCCCTATAAATGCAATCAGTGTGGGAAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACTGGAGAGAAGCCCTATAAATGCAATCAGTGTGGGAAGGCC  50

seq1  TTCAGTGACGGGTCCTCCTTCGCACGGCACCAGAGGTGCCATACAGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGACGGGTCCTCCTTCGCACGGCACCAGAGGTGCCATACAGGCAA  100

seq1  GAAGCCGTACGAGTGCCCGGAGTGTGGCAAAGCTTTCATACAGAACACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCGTACGAGTGCCCGGAGTGTGGCAAAGCTTTCATACAGAACACCT  150

seq1  CGCTCGTTCGTCACTGGAGGTACTATCACACTGGGGAGAAACCCTTCGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCGTTCGTCACTGGAGGTACTATCACACTGGGGAGAAACCCTTCGAT  200

seq1  TGCATCGACTGTGGGAAAGCCTTCAGTGACCACATAGGGCTTAATCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCGACTGTGGGAAAGCCTTCAGTGACCACATAGGGCTTAATCAACA  250

seq1  CAGGAGGATTCACACTGGAGAGAAACCATACACGTGTGAAGTGTGTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGATTCACACTGGAGAGAAACCATACACGTGTGAAGTGTGTCACA  300

seq1  AATCCTTTAGGTACGGCTCATCCCTCACTGTGCACCAAAGGATTCATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTTAGGTACGGCTCATCCCTCACTGTGCACCAAAGGATTCATACT  350

seq1  GGAGAGAAACCGTACGAGTGTGAGATTTGCAGAAAAGCCTTCAGCCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAACCGTACGAGTGTGAGATTTGCAGAAAAGCCTTCAGCCACCA  400

seq1  TGCATCCCTCACTCAGCATCAACGAGTGCATTCTGGAGAAAAGCCTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCCTCACTCAGCATCAACGAGTGCATTCTGGAGAAAAGCCTTTTA  450

seq1  AATGTAAAGAGTGTGGGAAAGCTTTTAGGCAGAATATACACCTTGCTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAGAGTGTGGGAAAGCTTTTAGGCAGAATATACACCTTGCTAGT  500

seq1  CACTGGAGGATCCATACCGGGGAGAAGCCCTTTGAGTGTGGGGAATGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAGGATCCATACCGGGGAGAAGCCCTTTGAGTGTGGGGAATGTGG  550

seq1  GAAATCTTTCAGCATCAGCTCACAGCTTGCCACGCATCAGAGAATTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTTCAGCATCAGCTCACAGCTTGCCACGCATCAGAGAATTCATA  600

seq1  CAGGAGAGAAGCCTTACGAATGTAAGGTTTGTAGGAAAGCATTTACACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGAAGCCTTACGAATGTAAGGTTTGTAGGAAAGCATTTACACAG  650

seq1  AAGGCTCACCTTGCACAACATCAGAAGACTCATACGGGGGAGAAGCCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCACCTTGCACAACATCAGAAGACTCATACGGGGGAGAAGCCATA  700

seq1  CGAGTGCAAGGAATGTGGCAA-GGCCTTCAGCCAGACCACTCACCTCATT  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CGAGTGCAAGGAATGTGGCAAGGGCCTTCAGCCAGACCACTCACCTCATT  750

seq1  CAACACCAGAGGGTTCATACTGGAGAGAAGCCCTATAAATGCCT-GGAAT  798
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAACACCAGAGGGTTCATACTGGAGAGAAGCCCTATAAATGCCTGGGAAT  800

seq1  GTGGGAAGGCCTTTGGTGATAACTCATCCTGTACTCAACATCGGAGACTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGGCCTTTGGTGATAACTCATCCTGTACTCAACATCGGAGACTT  850

seq1  CACACC-GGCCAGAGGCCTTACGAGTGTGTGGAGTGTGGGAAGACATTCA  897
      |||||| |||||||||||||||||||||||||||| ||||||||||||| 
seq2  CACACCGGGCCAGAGGCCTTACGAGTGTGTGGAGTTTGGGAAGACATTC-  899

seq1  AGACCAAGTCGTCCCTTATCTGTCATCGTAGATGTC-ACACGGGAGAGAA  946
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  AGACCAAGTCGTCCCTTTTCTGTCATCGTAGATGTCAACACGGGAGAGAA  949

seq1  ACCTTATGAGTGCAGTGCATGTGGTAAAGCCTTTAGCCACCGGCAGTCCC  996
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  ACCTTATGAGTGCAGTGCATGTGGTAAAGCCTTAAGCCACC-GCAGTCCC  998

seq1  TTAGTGTACATCAGAGAATTCATTCGGGGA  1026
       |||||||||||||||||||||| ||||||
seq2  -TAGTGTACATCAGAGAATTCATCCGGGGA  1027