BAC Information

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BAC

Clone NameB6Ng01-110M17
Chromosome7 (Build37)
Map Location 9,687,950 - 9,689,070
singlet/doubletsinglet
Overlap geneLOC665593
Upstream geneLOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810
Downstream geneEG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110M17.bB6Ng01-110M17.g
ACCDH917318DH917319
length1,104897
definitionDH917318|Mus musculus domesticus DNA, BAC clone: B6Ng01-110M17, 5' end.DH917319|Mus musculus domesticus DNA, BAC clone: B6Ng01-110M17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacatggactccttccaaccagacactatcatggattccacccaa
tcatctgtttcacacagactacatttggggcactgttgtccactctgtcc
ctggcacaaagcccaggaacatatgtgtacaagacctcatgacacacact
tcagtcttcacactgagcttccattcaattccagtatgcagacttagccc
acaattcctaccttccactaaagccagctgacctcatgcatgcctgagca
tttctaattatccccagcttatctaacttccaggtgtggtctaatgtcat
cattggagctttaagacctttgaatcttcagccaatggttaccataaagg
gaaacctgtccatgtaatccctgctgtggatgtggggacctttcattctg
agcatgtgccagggaaatccaatggaaggacagagacaattccagcacag
agtcccaggacaccacagtcccagaggcccttatgtgttaagtcaggagt
gtgattcctgggcaccctccacttacttcttcctggttggcaggtttcac
tgatactgggaaacctgtagaaaaacaaggttgtgagtaataagcaagag
tgttggtatcccaaaggttcacccaagtcctctctcttacatgcagtcag
gtacccactgcgctccatcccttaatggtgtctcttactgggtgacctgg
gacaaagaatcaatctcttcagtttgttacctgaagataagcagggcagc
ctgtctcatttactgttttattgccctgaagagacaccttgtccaaggca
attcttacaattaaaagaaagcatataactgggtgctagctaacagtttc
agagtgttcgtccagaactagcttggtgggagaagagagacaaggcaata
cctgaagtctttacattctgatctacaggcagcagaacacacacacacac
tcacgcacacacactacacaccaaccacaccacgcactggagtaggtgtg
ggcttctgaaacttcagttcactccagccacgcgctcctcacatatctac
ctcctattctcacattcctctcaaacagttcccttcctggtgacttagca
ttga
gaattctttgtatcttgcaggaaattggtctgaaagattcgatgagaccc
ttgaggccctgagagctgctgttctcaggataaacttgacacgagtggac
ctgtcattgacagagggtctctcctcctggatttcatctgctttttctta
ttttaaggaatgggtgggggtagttttatttgctgctgccatctgctgtg
ggcttgtgtttatgctttgcttagtttctaagctcagaacccaacaaaac
cttgacaaagttgtgattggtcaagcacttgctgccattgaacaaggggc
ctcccctgaaatttggctgtccatgcttaagacctaaatggcatctgagt
tctctgctaatgtgtcccacggatttgtggatacattgcactgggatgta
agagactcaacgctcattgatcagcacttacacctcactgaggtttacta
attcgttttttggctggcctcttttatagagttcgccctaggtcatttag
cagttactgtcacacagtactgcggtatccagagacgggcaactttcctc
atgcacagaccatcctaagacacgggacccggtggcgatagggttaccct
atgacaggaaaggctgtgacattggaggaatgacctaagacaggagccac
agcagatggacatgactgcagaggcctagaccagcctcaaatttaataaa
ataaaaggggggagatgtggagagccagccgtgccgtgagcaatcaccat
tataagatggtgctgggcttccactgcacctaactagtaaaacaagcctt
atgcgcaagtgcaagagtgaactcacgcctagtcactgcccatctcgggg
catagtaatggggtgatgggtgatcaacgtatcaagagctgccatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9687950_9689070
seq2: B6Ng01-110M17.b_46_1149 (reverse)

seq1  TCAATGCTTAGTCACCAGGGAGTGGAACTGTTTGAGAAGAATTGTGAGGA  50
      |||||||| |||||||||| || |||||||||||||| ||| ||||| ||
seq2  TCAATGCTAAGTCACCAGGAAG-GGAACTGTTTGAGAGGAA-TGTGA-GA  47

seq1  TTAGGAGGTAAGATATTGTTGGAGGAAGGGCGTGGCTGGGAGTGAACTTG  100
       |||||||| ||||| |||  |||| || |||||||| ||||||||||  
seq2  ATAGGAGGT-AGATA-TGT--GAGG-AGCGCGTGGCT-GGAGTGAACT--  89

seq1  GAGGTTTCAGAAGCCCACACCTACTCCAGTGCGTGTGTGTGTGTGTGTGT  150
      || |||||||||||||||||||||||||||||||| ||||| ||  ||||
seq2  GAAGTTTCAGAAGCCCACACCTACTCCAGTGCGTG-GTGTG-GTTGGTGT  137

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGCTGCCTGTAGATC  200
      ||  ||||||||| ||| |||||||||||||| |||||||||||||||||
seq2  GT-AGTGTGTGTGCGTGAGTGTGTGTGTGTGT-TCTGCTGCCTGTAGATC  185

seq1  AGAATGTAAAGACTTCAGGTATTGCCCTGTCCTCTCTTCTCCCCACCAAG  250
      |||||||||||||||||||||||||| ||| ||||||||| |||||||||
seq2  AGAATGTAAAGACTTCAGGTATTGCCTTGT-CTCTCTTCT-CCCACCAAG  233

seq1  CTAGTTCTGGACGAACACTCTGAAACTGTTAGCTAGCACCCAGTTATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTGGACGAACACTCTGAAACTGTTAGCTAGCACCCAGTTATATG  283

seq1  CTTTCTTTTAATTGTAAGAATTGCCTTGGACAAGGTGTCTCTTCAGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTAATTGTAAGAATTGCCTTGGACAAGGTGTCTCTTCAGGGCA  333

seq1  ATAAAACAGTAAATGAGACAGGCTGCCCTGCTTATCTTCAGGTAACAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAGTAAATGAGACAGGCTGCCCTGCTTATCTTCAGGTAACAAAC  383

seq1  TGAAGAGATTGATTCTTTGTCCCAGGTCACCCAGTAAGAGACACCATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGATTGATTCTTTGTCCCAGGTCACCCAGTAAGAGACACCATTAA  433

seq1  GGGATGGAGCGCAGTGGGTACCTGACTGCATGTAAGAGAGAGGACTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGAGCGCAGTGGGTACCTGACTGCATGTAAGAGAGAGGACTTGGG  483

seq1  TGAACCTTTGGGATACCAACACTCTTGCTTATTACTCACAACCTTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTTTGGGATACCAACACTCTTGCTTATTACTCACAACCTTGTTTT  533

seq1  TCTACAGGTTTCCCAGTATCAGTGAAACCTGCCAACCAGGAAGAAGTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGGTTTCCCAGTATCAGTGAAACCTGCCAACCAGGAAGAAGTAAG  583

seq1  TGGAGGGTGCCCAGGAATCACACTCCTGACTTAACACATAAGGGCCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGTGCCCAGGAATCACACTCCTGACTTAACACATAAGGGCCTCTG  633

seq1  GGACTGTGGTGTCCTGGGACTCTGTGCTGGAATTGTCTCTGTCCTTCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTGGTGTCCTGGGACTCTGTGCTGGAATTGTCTCTGTCCTTCCAT  683

seq1  TGGATTTCCCTGGCACATGCTCAGAATGAAAGGTCCCCACATCCACAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCCCTGGCACATGCTCAGAATGAAAGGTCCCCACATCCACAGCA  733

seq1  GGGATTACATGGACAGGTTTCCCTTTATGGTAACCATTGGCTGAAGATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTACATGGACAGGTTTCCCTTTATGGTAACCATTGGCTGAAGATTC  783

seq1  AAAGGTCTTAAAGCTCCAATGATGACATTAGACCACACCTGGAAGTTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCTTAAAGCTCCAATGATGACATTAGACCACACCTGGAAGTTAGA  833

seq1  TAAGCTGGGGATAATTAGAAATGCTCAGGCATGCATGAGGTCAGCTGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGGGGATAATTAGAAATGCTCAGGCATGCATGAGGTCAGCTGGCT  883

seq1  TTAGTGGAAGGTAGGAATTGTGGGCTAAGTCTGCATACTGGAATTGAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGAAGGTAGGAATTGTGGGCTAAGTCTGCATACTGGAATTGAATG  933

seq1  GAAGCTCAGTGTGAAGACTGAAGTGTGTGTCATGAGGTCTTGTACACATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCAGTGTGAAGACTGAAGTGTGTGTCATGAGGTCTTGTACACATA  983

seq1  TGTTCCTGGGCTTTGTGCCAGGGACAGAGTGGACAACAGTGCCCCAAATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGGGCTTTGTGCCAGGGACAGAGTGGACAACAGTGCCCCAAATG  1033

seq1  TAGTCTGTGTGAAACAGATGATTGGGTGGAATCCATGATAGTGTCTGGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGTGTGAAACAGATGATTGGGTGGAATCCATGATAGTGTCTGGTT  1083

seq1  GGAAGGAGTCCATGTGAATTC  1121
      |||||||||||||||||||||
seq2  GGAAGGAGTCCATGTGAATTC  1104