BAC Information

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BAC

Clone NameB6Ng01-114A01
Chromosome7 (Build37)
Map Location 38,745,444 - 38,837,742
singlet/doubletdoublet
Overlap geneC80913
Upstream geneLOC100043874, Zfp536, LOC100043453, EG627844
Downstream geneCcne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171, LOC100043467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114A01.bB6Ng01-114A01.g
ACCDH919640DH919641
length9891,100
definitionDH919640|Mus musculus domesticus DNA, BAC clone: B6Ng01-114A01, 5' end.DH919641|Mus musculus domesticus DNA, BAC clone: B6Ng01-114A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,745,444 - 38,746,598)(38,836,640 - 38,837,742)
sequence
gaattcattaaagaagctataaataacctctaactatttagccgtgaata
gagggtggactggggttgatggcttattttagtactgatgcggaatgctt
tttaaaagctacattttagcatgcatcaagctaatgatcaacacttgcac
tgtaatggtcaacctgagactgaatgtctctttaaggagtttggctacaa
gtaaatataatataatatttctttctttctttttttttactggtaggaaa
gcatccttgaagaatgaaaatgtgaggaagattgaaatgtaaaacaaaca
aacaaacaaacaaaaggcctgtgctttaacaaagtgttaaagcatctaga
caaactttttccccccaaagaatggtgccaatgacaactgtgtgtatggg
gagaggaggtgctcgtgggacttgaaaactttgaaaatctgtggtgtggc
ctatacacaaatcaaagacattttatacacaatctaaaccaggaagttca
caacattttagaaaccaagtttcataaaaattttacttccaaaaaaaaaa
aagttgtacaaaatattcttcttctagtcaaattttcccaaagggtttgt
gtagctttttgccttaaagattacagtatgacattcaaaggaagaatttt
tcaaagaaccatacagctgtgaaacctacaagaaatgtagatttttttaa
agtgcctttaaaatgtaaaagcaagtaatataattgttgaatctatttga
gatttttaaaagtgtctttaacatggtccatatggaaagcacaacatcac
agctggtacgaaactgcctgtgtttagttgaaaacacacaaacattatat
gacaggattctttgaaaagtaactcaaaacgcttatcctgcatcctaagg
ccaattaaatgtaagtacagaatttaacctagccagcagaacattacagc
attcaataattactttgactttcccaatgtcctctgata
gaattcagctatataggtgtacatctataatcctggcactcagaaggctg
aggcaggaggctcataacatggagatcagcctgggttccacagcaagact
ctggttttgtttttcctgttgttgttgctatctgaagctgtgaggtctaa
acactgtctagaggttatccaaaggtttttttctttcctggtatctctgg
tttcactctgtggatcctcctatgaacattttggtgtggacaggcttgag
atactctgtacctggtcccctgcatgctgtcctaaagtcacctgtgctac
actactcttactccctgtagtctggccatacttcctcccatacttgaata
ccgtttcaggctcaactttccatctgaatgtccacccaccagatcctttc
ttggcaggttgattgtcacctttgaaatcacagcttgaggtgacagaccc
cctgacccagacctgagtccccgcaatccccagctccattgtacttctca
catctggcaagtctgtaccaccctctgcttcaagaatataaatcgacagc
aattgctacaacaactaccattcttgctgggacaggacctgctccccatg
ttcttggtagaccccgagtgacagtaggttcctctgaaagctaaggatag
agttcacagagtttgtaggactgactgcatctgcatggaacccaggtagt
ggaatctgggctgcccttcccttatcttctgctgtcattgtggcctcagg
tgcaacgacccgaccccttcctctgggggacatgtaaccatggaagtccc
ctttgcttgtgtgtagtagtaggtgtgggaaaggccaggtcactgtctca
tgcacttacatctcaccagcaagggagaaacagcctggctcccttgcctt
gatgtcaggatggtcaaggcctagtctgttttgtgcctcagaggttactg
cggggacctactcagtcatgcttggcacatcttgccagccttcctgtcca
ggagacaatcctcatgcctccatgtgtgcatgggcctcctcaggaggcta
cacaaggaaaccgtttctcctgattcctttccacggctgcaatatcctga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_38745444_38746598
seq2: B6Ng01-114A01.b_44_1032

seq1  GAATTCATTAAAGAAGCTATAAATAACCTCTAACTATTTAGCCGTGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAGAAGCTATAAATAACCTCTAACTATTTAGCCGTGAATA  50

seq1  GAGGGTGGACTGGGGTTGATGGCTTATTTTAGTACTGATGCGGAATGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGACTGGGGTTGATGGCTTATTTTAGTACTGATGCGGAATGCTT  100

seq1  TTTAAAAGCTACATTTTAGCATGCATCAAGCTAATGATCAACACTTGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGCTACATTTTAGCATGCATCAAGCTAATGATCAACACTTGCAC  150

seq1  TGTAATGGTCAACCTGAGACTGAATGTCTCTTTAAGGAGTTTGGCTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGTCAACCTGAGACTGAATGTCTCTTTAAGGAGTTTGGCTACAA  200

seq1  GTAAATATAATATAATATTTCTTTCTTTCTTTTTTTTTACTGGTAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATAATATAATATTTCTTTCTTTCTTTTTTTTTACTGGTAGGAAA  250

seq1  GCATCCTTGAAGAATGAAAATGTGAGGAAGATTGAAATGTAAAACAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTTGAAGAATGAAAATGTGAGGAAGATTGAAATGTAAAACAAACA  300

seq1  AACAAACAAACAAAAGGCCTGTGCTTTAACAAAGTGTTAAAGCATCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAAAGGCCTGTGCTTTAACAAAGTGTTAAAGCATCTAGA  350

seq1  CAAACTTTTTCCCCCCAAAGAATGGTGCCAATGACAACTGTGTGTATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTTTCCCCCCAAAGAATGGTGCCAATGACAACTGTGTGTATGGG  400

seq1  GAGAGGAGGTGCTCGTGGGACTTGAAAACTTTGAAAATCTGTGGTGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGGTGCTCGTGGGACTTGAAAACTTTGAAAATCTGTGGTGTGGC  450

seq1  CTATACACAAATCAAAGACATTTTATACACAATCTAAACCAGGAAGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACACAAATCAAAGACATTTTATACACAATCTAAACCAGGAAGTTCA  500

seq1  CAACATTTTAGAAACCAAGTTTCATAAAAATTTTACTTCCAAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTTAGAAACCAAGTTTCATAAAAATTTTACTTCCAAAAAAAAAA  550

seq1  AAGTTGTACAAAATATTCTTCTTCTAGTCAAATTTTCCCAAAGGGTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTACAAAATATTCTTCTTCTAGTCAAATTTTCCCAAAGGGTTTGT  600

seq1  GTAGCTTTTTGCCTTAAAGATTACAGTATGACATTCAAAGGAAGAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTTTTGCCTTAAAGATTACAGTATGACATTCAAAGGAAGAATTTT  650

seq1  TCAAAGAACCATACAGCTGTGAAACCTACAAGAAATGTAGATTTTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAACCATACAGCTGTGAAACCTACAAGAAATGTAGATTTTTTTAA  700

seq1  AGTGCCTTTAAAATGTAAAAGCAAGTAATATAATTGTTGAATCTATTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTTTAAAATGTAAAAGCAAGTAATATAATTGTTGAATCTATTTGA  750

seq1  GA-TTTTAAAAGTGTCTTTAACATGGTCCATATGGAAAGCACAACATCAC  799
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTAAAAGTGTCTTTAACATGGTCCATATGGAAAGCACAACATCAC  800

seq1  AGCTGGTACGAAACTGCCTGTGTTTAGTTGAAAACACACAAACAATATAT  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGCTGGTACGAAACTGCCTGTGTTTAGTTGAAAACACACAAACATTATAT  850

seq1  GACAGGATTCTTTGAAAAGTAACTCAAAACGCTATTCCTGCATCCTAAGG  899
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  GACAGGATTCTTTGAAAAGTAACTCAAAACGCTTATCCTGCATCCTAAGG  900

seq1  CCAATTAGACAGTAGTCACAGAA-TTAACGAAGCCAGCAGAACATTACAG  948
      ||||||| |  |||   |||||| |||||  |||||||||||||||||||
seq2  CCAATTA-AATGTAAGTACAGAATTTAACCTAGCCAGCAGAACATTACAG  949

seq1  CATTCAAACATTTACTTTGACTTTCCCAATG-CCACTGATAAAGGTGAGA  997
      ||||| || | |||||||||||||||||||| || ||||||         
seq2  CATTC-AATAATTACTTTGACTTTCCCAATGTCCTCTGATA---------  989

seq1  GAGCTCTGCCCAGCCAAGCAGGACGCCGTCCCAACTCCATGGCCGAATCC  1047
                                                        
seq2  --------------------------------------------------  989

seq1  GCCGCATGTCCTAAAGCGCAGCTGGAGCTGCAGGCGGAGCCCTCTAGCTT  1097
                                                        
seq2  --------------------------------------------------  989

seq1  CTCTGCTGCAATCGGGCAGCTCTGAACTTTGACACCCTCTTTGTGGGTTC  1147
                                                        
seq2  --------------------------------------------------  989

seq1  CTCTGATA  1155
              
seq2  --------  989

seq1: chr7_38836640_38837742
seq2: B6Ng01-114A01.g_64_1163 (reverse)

seq1  TCAGGATATCTGCAGCCGGTGGAAGGAATCTGAGAG-AACGGTTTCCTTG  49
      ||||||||| ||||||||  | |||||||| | ||| |||||||||||||
seq2  TCAGGATAT-TGCAGCCGTGGAAAGGAATCAG-GAGAAACGGTTTCCTTG  48

seq1  TGTAGCATCCCTGA-GAGGCCATTGCACACATGGA-GCATGAGATGTGTC  97
      |||||| | ||||| ||||||  |||||||||||| |||||||   ||||
seq2  TGTAGCCT-CCTGAGGAGGCCCATGCACACATGGAGGCATGAGGATTGTC  97

seq1  TCCTGGAACAGGGAAGGCTGGCAAGATTGTGCCAAGCATGACTGAGTAGG  147
      |||||| ||| ||||||||||||||| |||||||||||||||||||||||
seq2  TCCTGG-ACA-GGAAGGCTGGCAAGA-TGTGCCAAGCATGACTGAGTAGG  144

seq1  TCCCCGCAGTAACCTCTGAGGCACAAAACAGACTAGGCCTTGACCATCCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGCAGTAACCTCTGAGGCACAAAACAGACTAGGCCTTGACCATCCT  194

seq1  GACATCAAGGCAAGGGAGCCAGGCTGTTTCTCCCTTGCTGGTGAGATGTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAAGGCAAGGGAGCCAGGCTGTTTCTCCCTTGCTGGTGAGATGTA  244

seq1  AGTGCCTGAGACAGTGACCTGGCCTTTCCCACACCTACTACTACACACAA  297
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATGAGACAGTGACCTGGCCTTTCCCACACCTACTACTACACACAA  294

seq1  GCAAAGGGGACTTCCATGGTTACATGTCCCCCAGAGGAAGGGGTCGGGTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGGGACTTCCATGGTTACATGTCCCCCAGAGGAAGGGGTCGGGTC  344

seq1  GTTGCACCTGAGGCCACAATGACAGCAGAAGATAAGGGAAGGGCAGCCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCACCTGAGGCCACAATGACAGCAGAAGATAAGGGAAGGGCAGCCCA  394

seq1  GATTCCACTACCTGGGTTCCATGCAGATGCAGTCAGTCCTACAAACTCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCACTACCTGGGTTCCATGCAGATGCAGTCAGTCCTACAAACTCTG  444

seq1  TGAACTCTATCCTTAGCTTTCAGAGGAACCTACTGTCACTCGGGGTCTAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTATCCTTAGCTTTCAGAGGAACCTACTGTCACTCGGGGTCTAC  494

seq1  CAAGAACATGGGGAGCAGGTCCTGTCCCAGCAAGAATGGTAGTTGTTGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACATGGGGAGCAGGTCCTGTCCCAGCAAGAATGGTAGTTGTTGTA  544

seq1  GCAATTGCTGTCGATTTATATTCTTGAAGCAGAGGGTGGTACAGACTTGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGCTGTCGATTTATATTCTTGAAGCAGAGGGTGGTACAGACTTGC  594

seq1  CAGATGTGAGAAGTACAATGGAGCTGGGGATTGCGGGGACTCAGGTCTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTGAGAAGTACAATGGAGCTGGGGATTGCGGGGACTCAGGTCTGG  644

seq1  GTCAGGGGGTCTGTCACCTCAAGCTGTGATTTCAAAGGTGACAATCAACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGGGTCTGTCACCTCAAGCTGTGATTTCAAAGGTGACAATCAACC  694

seq1  TGCCAAGAAAGGATCTGGTGGGTGGACATTCAGATGGAAAGTTGAGCCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGAAAGGATCTGGTGGGTGGACATTCAGATGGAAAGTTGAGCCTG  744

seq1  AAACGGTATTCAAGTATGGGAGGAAGTATGGCCAGACTACAGGGAGTAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGTATTCAAGTATGGGAGGAAGTATGGCCAGACTACAGGGAGTAAG  794

seq1  AGTAGTGTAGCACAGGTGACTTTAGGACAGCATGCAGGGGACCAGGTACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGTAGCACAGGTGACTTTAGGACAGCATGCAGGGGACCAGGTACA  844

seq1  GAGTATCTCAAGCCTGTCCACACCAAAATGTTCATAGGAGGATCCACAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATCTCAAGCCTGTCCACACCAAAATGTTCATAGGAGGATCCACAGA  894

seq1  GTGAAACCAGAGATACCAGGAAAGAAAAAAACCTTTGGATAACCTCTAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACCAGAGATACCAGGAAAGAAAAAAACCTTTGGATAACCTCTAGA  944

seq1  CAGTGTTTAGACCTCACAGCTTCAGATAGCAACAACAACAGGAAAAACAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTAGACCTCACAGCTTCAGATAGCAACAACAACAGGAAAAACAA  994

seq1  AACCAGAGTCTTGCTGTGGAACCCAGGCTGATCTCCATGTTATGAGCCTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGTCTTGCTGTGGAACCCAGGCTGATCTCCATGTTATGAGCCTC  1044

seq1  CTGCCTCAGCCTTCTGAGTGCCAGGATTATAGATGTACACCTATATAGCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAGCCTTCTGAGTGCCAGGATTATAGATGTACACCTATATAGCT  1094

seq1  GAATTC  1103
      ||||||
seq2  GAATTC  1100