BAC Information

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BAC

Clone NameB6Ng01-115K07
Chromosome3 (Build37)7 (Build37)
Map Location 87,877,336 - 87,877,47530,983,465 - 30,984,589
singlet/doubletsingletsinglet
Overlap geneTtc24
Upstream geneKirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp
Downstream geneIqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115K07.bB6Ng01-115K07.g
ACCDH920855DH920856
length1661,113
definitionDH920855|Mus musculus domesticus DNA, BAC clone: B6Ng01-115K07, 5' end.DH920856|Mus musculus domesticus DNA, BAC clone: B6Ng01-115K07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,877,336 - 87,877,475)(30,983,465 - 30,984,589)
sequence
gaattcaaggccagccagagatagagagaaaaaccctgtctcaaaacaaa
acaaattaaaaaaaaacaaataaaaaaatcacaagaccaaataaaacaaa
attaatatttatttattgttgttttcgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgc
gaattcaaagattctctggcctctgtctccctcccggctgctgggcttaa
aggagtgttctacacgaggagatctctccacctggttctttaatcccaac
gcttgggagacagagagatatgtgtatgagctggaggccagcctggtctc
ccccacctccctttgagatctggagattaaactcgatttgtcagcctggc
accactgagtcatctggctggtctcttccaaatgcaaattttttattctg
cgcggtttttgcatgtaatattaactcggaaagagctgctgtcttcacca
ccccttgctcacctgttgctcctcatccacttttctcctggaaggtttcc
aatgactctcacaatccttcacgcacaataaactagactgcaaggctgac
ttcgtctctcttagcttgccagagtctctgccctcttactccccctactg
gctagacacaggtgttgtggagccaaactgctgccttaggagtagcaggg
ccatagggagaagctgagtacttggtggcttggcatcatcgcaagtgctt
aaactttggctgctgtggaagaaagaggtagaattctattgtgttgaatt
ggctatcattctgagttctgtttttagggtttattttattatttttaaaa
ttgttttatgtgtattggtgttttgcatgcatgcatgtccagggtgtcag
atcccctggaactggagttacaaacagatgtgatctgtcatgtggttgct
gggaattgaacctgggtcatttggaagagcagccagtgctcttaactatt
gagccgtttctccagcccctagggtttattttaaatcttatctactctaa
aatgctcactgtatacaccgtgaacaatttcccacagtcttaaaacatca
ttttcacgttgtgtataatattccatcatctaaaagctagcagagtttgt
tttttttttttccttcatgtttgaacccattttttattgagtctgactaa
acccagggatagatatggagatgcagatgagcacgtctatgcctctagct
tgctttcattgctgtgtaaggccggtgacaaagcaatggtgggagcgaag
ctcattgtttgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_87877336_87877475
seq2: B6Ng01-115K07.b_103_213

seq1  TTAAAAAAAAAACAAAAAACAAAAACTATTTAAGGGCTAGACACCCAGGT  50
       | ||||||||||||| || |||| |     |||  | |   |  ||   
seq2  -TTAAAAAAAAACAAATAAAAAAATC---ACAAGACCAAATAAAACA---  43

seq1  CATAGATTCATAGATACCCAGGTCCAATCTCACTTGTGTGATTGGATACC  100
         | ||| |||  ||             |   |||| || ||      |
seq2  ---AAATTAATATTTA-------------TTTATTGT-TGTTT-----TC  71

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGC  140
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGC  111

seq1: chr7_30983465_30984589
seq2: B6Ng01-115K07.g_68_1180

seq1  GAATTCAAAGATTCTCTGGCCTCTGTCTCCCTCCCGGCTGCTGGGCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGATTCTCTGGCCTCTGTCTCCCTCCCGGCTGCTGGGCTTAA  50

seq1  AGGAGTGTTCTACACGAGGAGATCTCTCCACCTGGTTCTTTAATCCCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGTTCTACACGAGGAGATCTCTCCACCTGGTTCTTTAATCCCAAC  100

seq1  GCTTGGGAGACAGAGAGATATGTGTATGAGCTGGAGGCCAGCCTGGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGAGACAGAGAGATATGTGTATGAGCTGGAGGCCAGCCTGGTCTC  150

seq1  CCCCACCTCCCTTTGAGATCTGGAGATTAAACTCGATTTGTCAGCCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCTCCCTTTGAGATCTGGAGATTAAACTCGATTTGTCAGCCTGGC  200

seq1  ACCACTGAGTCATCTGGCTGGTCTCTTCCAAATGCAAATTTTTTATTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGAGTCATCTGGCTGGTCTCTTCCAAATGCAAATTTTTTATTCTG  250

seq1  CGCGGTTTTTGCATGTAATATTAACTCGGAAAGAGCTGCTGTCTTCACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGTTTTTGCATGTAATATTAACTCGGAAAGAGCTGCTGTCTTCACCA  300

seq1  CCCCTTGCTCACCTGTTGCTCCTCATCCACTTTTCTCCTGGAAGGTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGCTCACCTGTTGCTCCTCATCCACTTTTCTCCTGGAAGGTTTCC  350

seq1  AATGACTCTCACAATCCTTCACGCACAATAAACTAGACTGCAAGGCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTCTCACAATCCTTCACGCACAATAAACTAGACTGCAAGGCTGAC  400

seq1  TTCGTCTCTCTTAGCTTGCCAGAGTCTCTGCCCTCTTACTCCCCCTACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTCTCTCTTAGCTTGCCAGAGTCTCTGCCCTCTTACTCCCCCTACTG  450

seq1  GCTAGACACAGGTGTTGTGGAGCCAAACTGCTGCCTTAGGAGTAGCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACACAGGTGTTGTGGAGCCAAACTGCTGCCTTAGGAGTAGCAGGG  500

seq1  CCATAGGGAGAAGCTGAGTACTTGGTGGCTTGGCATCATCGCAAGTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGGAGAAGCTGAGTACTTGGTGGCTTGGCATCATCGCAAGTGCTT  550

seq1  AAACTTTGGCTGCTGTGGAAGAAAGAGGTAGAATTCTATTGTGTTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTGGCTGCTGTGGAAGAAAGAGGTAGAATTCTATTGTGTTGAATT  600

seq1  GGCTATCATTCTGAGTTCTGTTTTTAGGGTTTATTTTATTATTTTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATCATTCTGAGTTCTGTTTTTAGGGTTTATTTTATTATTTTTAAAA  650

seq1  TTGTTTTATGTGTATTGGTGTTTTGCATGCATGCATGTCCAGGGTGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATGTGTATTGGTGTTTTGCATGCATGCATGTCCAGGGTGTCAG  700

seq1  ATCCCCTGGAACTGGAGTTACAAACAGATGTGATCTGTCATGTGGTTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTGGAACTGGAGTTACAAACAGATGTGATCTGTCATGTGGTTGCT  750

seq1  GGGAATTGAACCTGGGTCATTTGGAAGAGCAGCCAGTGCTCTTAACTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTGAACCTGGGTCATTTGGAAGAGCAGCCAGTGCTCTTAACTATT  800

seq1  GAGCCGTTTCTCCAGCCCCTAGGGTTTATTTTAAATCTTATCTACTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGTTTCTCCAGCCCCTAGGGTTTATTTTAAATCTTATCTACTCTAA  850

seq1  AATGCTCACTGTATACACCGTGAACAATTTCCCACAGTCTTAAAAACATC  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATGCTCACTGTATACACCGTGAACAATTTCCCACAGTCTT-AAAACATC  899

seq1  ATTTTCACGTTGTGTATAATATTCCATCATCTAAAAGCTAGCAGAAGTTT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTTTCACGTTGTGTATAATATTCCATCATCTAAAAGCTAGCAG-AGTTT  948

seq1  GTTTTTTTTTTTTTCCTTCATGTTTGAACCCA-TATTTATTGAGTCCTGA  999
      | |||||||||||||||||||||||||||||| | |||||||||| ||||
seq2  G-TTTTTTTTTTTTCCTTCATGTTTGAACCCATTTTTTATTGAGT-CTGA  996

seq1  CTAAACCCAGGGATAGATAATGGAGATGCAGGATGAGCAACGTCCATTGC  1049
      |||||||||||||||||| ||||||||||| ||||||| ||||| ||  |
seq2  CTAAACCCAGGGATAGAT-ATGGAGATGCA-GATGAGC-ACGTCTATGCC  1043

seq1  TCTAGCTTGCTTTCTATTGCTGTGGTAAAGGCCGGTGACCAAAAGCAATG  1099
      |||||||||||||| |||||||||   ||||||||||||  |||||||||
seq2  TCTAGCTTGCTTTC-ATTGCTGTG--TAAGGCCGGTGAC--AAAGCAATG  1088

seq1  TGGGAAGCGAAGCTCATTGGTTTGAC  1125
        || ||||||||||||| |||||||
seq2  GTGGGAGCGAAGCTCATT-GTTTGAC  1113