BAC Information

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BAC

Clone NameB6Ng01-116F01
Chromosome7 (Build37)
Map Location 50,728,192 - 50,890,925
singlet/doubletdoublet
Overlap geneA230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18
Upstream geneBC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik
Downstream geneSiglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116F01.bB6Ng01-116F01.g
ACCDH921343DH921344
length645370
definitionDH921343|Mus musculus domesticus DNA, BAC clone: B6Ng01-116F01, 5' end.DH921344|Mus musculus domesticus DNA, BAC clone: B6Ng01-116F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,728,192 - 50,728,835)(50,890,550 - 50,890,925)
sequence
gaattctctatcaaatgaccatccctcctttgcggtccacttgcccaaat
tctcaatgacattgacttccacaggcggggactttggaaaaaggcgttta
ttggtgtggtggtctcaacactccccatgaattggaacacacggccccca
gggcccccctcccacctccccttgtcgccctccccctccccaccccatcc
cggaccctgggaatggaagacaatgtgggatggggcccacgcccccgtct
gaggtacagtcactgccccttgcccccctgcccctctctgccctcgtctt
caccaggctcggagtggtgtgattttgggtgtgtggttactggattttgg
gctggtggcatggtgcctctgcctgggctcagaatgtctgtgcgtctcct
ctctcccaactctgtgaggcctgacgtgtagcaaagtgaggtgttcccat
acacagaacctgtcagcttcctgtgtggatgacagtggcccactccgggg
aaactgctgctagttacagactctggggcaggtgaagccaggagctattg
ctggtcagtcgctggtgtgcatgtgtgcgtgcatgtgtgcatgtgtatgt
gtgtttgtgtgtgcatgagcgtgcatgtatgcatgctgtgtgtga
attgaagtggatgtggatagggtaggacttgccaccaccttagacacaaa
ctggtatcccctactctgtaatgcctgaggtttgactatgggggaggtaa
aggtacctgagatcccactccatactgcagggcgaacactgacatattca
agaccagtatctgtgcctcctagcacatcacagtagctgtgagtatcagg
gagcataaagagtcctgaagaagaaggggattagaaagagacccaggctg
gacaggaagagaatccagatagctaggggaagcctaaggaacacaaagtg
gttgcagggaggtaggggtccaagtttaccactttacatggcaggtagat
gtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_50728192_50728835
seq2: B6Ng01-116F01.b_44_687

seq1  GAATTCTCTATCAAATGACCATCCCTCCTTTGCGGTCCACTTGCCCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATCAAATGACCATCCCTCCTTTGCGGTCCACTTGCCCAAAT  50

seq1  TCTCAATGACATTGACTTCCACAGGCGGGGACTTTGGAAAAAGGCGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGACATTGACTTCCACAGGCGGGGACTTTGGAAAAAGGCGTTTA  100

seq1  TTGGTGTGGTGGTCTCAACACTCCCCATGAATTGGAACACACGGCCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTGGTGGTCTCAACACTCCCCATGAATTGGAACACACGGCCCCCA  150

seq1  GGGCCCCCCTCCCACCTCCCCTTGTCGCCCTCCCCCTCCCCACCCCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCCCCTCCCACCTCCCCTTGTCGCCCTCCCCCTCCCCACCCCATCC  200

seq1  CGGACCCTGGGAATGGAAGACAATGTGGGATGGGGCCCACGCCCCCGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACCCTGGGAATGGAAGACAATGTGGGATGGGGCCCACGCCCCCGTCT  250

seq1  GAGGTACAGTCACTGCCCCTTGCCCCCCTGCCCCTCTCTGCCCTCGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTACAGTCACTGCCCCTTGCCCCCCTGCCCCTCTCTGCCCTCGTCTT  300

seq1  CACCAGGCTCGGAGTGGTGTGATTTTGGGTGTGTGGTTACTGGATTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGCTCGGAGTGGTGTGATTTTGGGTGTGTGGTTACTGGATTTTGG  350

seq1  GCTGGTGGCATGGTGCCTCTGCCTGGGCTCAGAATGTCTGTGCGTCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGGCATGGTGCCTCTGCCTGGGCTCAGAATGTCTGTGCGTCTCCT  400

seq1  CTCTCCCAACTCTGTGAGGCCTGACGTGTAGCAAAGTGAGGTGTTCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCAACTCTGTGAGGCCTGACGTGTAGCAAAGTGAGGTGTTCCCAT  450

seq1  ACACAGAACCTGTCAGCTTCCTGTGTGGATGACAGTGGCCCACTCCGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAACCTGTCAGCTTCCTGTGTGGATGACAGTGGCCCACTCCGGGG  500

seq1  AAACTGCTGCTAGTTACAGACTCTGGGGCAGGTGAAGCCAGGAGCTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTGCTAGTTACAGACTCTGGGGCAGGTGAAGCCAGGAGCTATTG  550

seq1  CTGGTCAGTCGCTGGTGTGCATGTGTGCGTGCATGTGTGCATGTGTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAGTCGCTGGTGTGCATGTGTGCGTGCATGTGTGCATGTGTATGT  600

seq1  GTGTTTGTGTGTGCATGAGCGTGCATGTATGCATGCTGTGTGTG  644
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGTGTGCATGAGCGTGCATGTATGCATGCTGTGTGTG  644

seq1: chr7_50890550_50890925
seq2: B6Ng01-116F01.g_68_443 (reverse)

seq1  ACACACACACACACACACACATCTACCTGCCATGTAAAGTGGTAAACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACATCTACCTGCCATGTAAAGTGGTAAACTTG  50

seq1  GACCCCTACCTCCCTGCAACCACTTTGTGTTCCTTAGGCTTCCCCTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTACCTCCCTGCAACCACTTTGTGTTCCTTAGGCTTCCCCTAGCT  100

seq1  ATCTGGATTCTCTTCCTGTCCAGCCTGGGTCTCTTTCTAATCCCCTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGATTCTCTTCCTGTCCAGCCTGGGTCTCTTTCTAATCCCCTTCTT  150

seq1  CTTCAGGACTCTTTATGCTCCCTGATACTCACAGCTACTGTGATGTGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGACTCTTTATGCTCCCTGATACTCACAGCTACTGTGATGTGCTA  200

seq1  GGAGGCACAGATACTGGTCTTGAATATGTCAGTGTTCGCCCTGCAGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACAGATACTGGTCTTGAATATGTCAGTGTTCGCCCTGCAGTATG  250

seq1  GAGTGGGATCTCAGGTACCTTTACCTCCCCCATAGTCAAACCTCAGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGATCTCAGGTACCTTTACCTCCCCCATAGTCAAACCTCAGGCAT  300

seq1  TACAGAGTAGGGGATACCAGTTTGTGTCTAAGGTGGTGGCAAGTCCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTAGGGGATACCAGTTTGTGTCTAAGGTGGTGGCAAGTCCTACC  350

seq1  CTATCCACATCCACTTCAATGAATTC  376
      ||||||||||||||||||||||||||
seq2  CTATCCACATCCACTTCAATGAATTC  376