BAC Information

Click to search

BAC

Clone NameB6Ng01-116O11
Chromosome7 (Build37)7 (Build37)
Map Location 49,857,400 - 49,858,30150,060,592 - 50,061,181
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776
Downstream geneC330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116O11.bB6Ng01-116O11.g
ACCDH921784DH921785
length992590
definitionDH921784|Mus musculus domesticus DNA, BAC clone: B6Ng01-116O11, 5' end.DH921785|Mus musculus domesticus DNA, BAC clone: B6Ng01-116O11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,857,400 - 49,858,301)(50,060,592 - 50,061,181)
sequence
gaattctctctcaaaaggtccaggtgagacaagattccttacagactctt
aatgattttcaaagtctgttaagagatattaattggcttcgtccttatct
gaaacttacaacaggagagttaaaacctttgtttgacattctgcgaggag
actcagatccatcctctccacgcatgttaactcaagaggcacgaatgtca
ctacctaaagttgaacaagccatcagtgagcaaaatattgggtatttttc
cccagagcttccacttcagttccttgtcttccctactcccttttcaccca
caggtctgctgtggcagcttaaacctctgttttgggtccacatgtcagct
tctccctccaaagtgctacccacatatcctcagttagttgctaatgttct
gtgcctagacagagaagctgctcttaagcctttggcagagatccagatgt
tattgttctaacctatgatgcctctcaagttcagtggttacttaaaaata
atgatgtttgggcagttaattgcatctcctttcaaggtgtgattgataat
cattaccctgctgataaattggttcagtttttgcataagacgcctgtggt
tttccctaagagaacaaagtcagacccgattcctggggctatgttagttt
ttactgatgggtcttcctcaggttggctgcttttaatattggtggaaagg
tctcacattttatgacagacctctcctcagcgcagcttgttgaattggca
gctattgttaaagtatttgtactattgcctaaaactcctttcaatttata
tacagacagcgcctatgtggctacctctattcctcttttagaaactgtcc
tttatattcgcccttctaccaatgcgtctccaaatttgctaaacttcaga
gccttattcttgctcgtaattttccatttttattggtcatattcgtgctc
attctggcctgcctggacctttgtctgaaggcacaatatagt
gaattcaatcctatgagaagtagaatataaaaggttctggatacagggtt
tacaaattgtcaacggaatgaatcctgggaaagcagggggagggctgggg
aaatagctcagtggctaaaacaggaggaccagagttcaatccaggaagtc
atgcaaggtcaggagggtgggacatcattcttggaattacacttggaatt
ccagcctcagaaagcagaggcaagtggtgtgttccctaggataaggtggc
taagacgagtcacatcagtgagacagactgtgcttttttttttaattgta
tattttctttatttacatttcaaatgcccctttctcagtttccccgtatc
ccatcctccctccccctgattatgagggtgttcctccacccatccatcca
ctacaacgtcccctccctggatttccctatgctggggcatctatccagcc
atcataggaccaaggacctctccttccactgatgtctgacaaggccatcc
tctgctaaatatgcagcgcgagccaagtgtactcctcaagactcctgaga
atcaaataaccctattaacagagctaaacaaagaattctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49857400_49858301
seq2: B6Ng01-116O11.b_47_948

seq1  GAATTCTCTCTCAAAAGGTCCAGGTGAGACAAGATTCCTTACAGACTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCAAAAGGTCCAGGTGAGACAAGATTCCTTACAGACTCTT  50

seq1  AATGATTTTCAACGTCTGTTAAGAGATATTAATTGGCTTCGTCCTTATCT  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATGATTTTCAAAGTCTGTTAAGAGATATTAATTGGCTTCGTCCTTATCT  100

seq1  GAAACTTACAACAGGAGAGTTAAAACCTTTGTTTGACATTCTGCGAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTACAACAGGAGAGTTAAAACCTTTGTTTGACATTCTGCGAGGAG  150

seq1  ACTCAGATCCATCCTCTCCACGCATGTTAACTCAAGAGGCACGAATGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGATCCATCCTCTCCACGCATGTTAACTCAAGAGGCACGAATGTCA  200

seq1  CTACCTAAAGTTGAACAAGCCATCAGTGAGCAAAATATTGGGTATTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAAAGTTGAACAAGCCATCAGTGAGCAAAATATTGGGTATTTTTC  250

seq1  CCCAGAGCTTCCACTTCAGTTCCTTGTCTTCCCTACTCCCTTTTCACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCTTCCACTTCAGTTCCTTGTCTTCCCTACTCCCTTTTCACCCA  300

seq1  CAGGTCTGCTGTGGCAGCTTAAACCTCTGTTTTGGGTCCACATGTCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGCTGTGGCAGCTTAAACCTCTGTTTTGGGTCCACATGTCAGCT  350

seq1  TCTCCCTCCAAAGTGCTACCCACATATCCTCAGTTAGTTGCTAATGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCCAAAGTGCTACCCACATATCCTCAGTTAGTTGCTAATGTTCT  400

seq1  GTGCCTAGACAGAGAAGCTGCTCTTAAGCCTTTGGCAGAGATCCAGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTAGACAGAGAAGCTGCTCTTAAGCCTTTGGCAGAGATCCAGATGT  450

seq1  TATTGTTCTAACCTATGATGCCTCTCAAGTTCAGTGGTTACTTAAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTCTAACCTATGATGCCTCTCAAGTTCAGTGGTTACTTAAAAATA  500

seq1  ATGATGTTTGGGCAGTTAATTGCATCTCCTTTCAAGGTGTGATTGATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTTTGGGCAGTTAATTGCATCTCCTTTCAAGGTGTGATTGATAAT  550

seq1  CATTACCCTGCTGATAAATTGGTTCAGTTTTTGCATAAGACGCCTGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCCTGCTGATAAATTGGTTCAGTTTTTGCATAAGACGCCTGTGGT  600

seq1  TTTCCCTAAGAGAACAAAGTCAGACCCGATTCCTGGGGCTATGTTAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTAAGAGAACAAAGTCAGACCCGATTCCTGGGGCTATGTTAGTTT  650

seq1  TTACTGATGGGTCTTCCTCAGGTTGGCTGCTTTTAATATTGGTGGAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGATGGGTCTTCCTCAGGTTGGCTGCTTTTAATATTGGTGGAAAGG  700

seq1  TCTCACATTTTATGACAGACCTCTCCTCAGTGCAGCTTGTTGAATTGGCA  750
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTCACATTTTATGACAGACCTCTCCTCAGCGCAGCTTGTTGAATTGGCA  750

seq1  GCTATTATTAAAGTATTTGAACTATTGCCT-GAACTTCTTTTATTTTATA  799
      |||||| |||||||||||| ||||||||||  |||| |||| | ||||||
seq2  GCTATTGTTAAAGTATTTGTACTATTGCCTAAAACTCCTTTCAATTTATA  800

seq1  TACAGACAGCGCCTATGTGGCTGCCTCTGTTTCTCTTTTAGAAACTGTTC  849
      |||||||||||||||||||||| ||||| || |||||||||||||||| |
seq2  TACAGACAGCGCCTATGTGGCTACCTCTATTCCTCTTTTAGAAACTGTCC  850

seq1  CTTATATTTGCCCTTCTAACAATGCATCTCCAATGTTTGCTAAACTCCAG  899
       ||||||| ||||||||| |||||| |||||||  ||||||||||| |||
seq2  TTTATATTCGCCCTTCTACCAATGCGTCTCCAA-ATTTGCTAAACTTCAG  899

seq1  AGC  902
      |||
seq2  AGC  902

seq1: chr7_50060592_50061181
seq2: B6Ng01-116O11.g_71_660

seq1  GAATTCAATCCTTTGAGAAGTAGAATATAAAAGGTTCTGGATACAGGGTT  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCTATGAGAAGTAGAATATAAAAGGTTCTGGATACAGGGTT  50

seq1  TACAAATTGTCAACGGAATGAATCCTGGGAAAGCAGGGGGAGGGCTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTGTCAACGGAATGAATCCTGGGAAAGCAGGGGGAGGGCTGGGG  100

seq1  AAATAGCTCAGTGGCTAAAACAGGAGGACCAGAGTTCAATCCAGGAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTCAGTGGCTAAAACAGGAGGACCAGAGTTCAATCCAGGAAGTC  150

seq1  ATGCAAGGTCAGGAGGGTGGGACATCATTCTTGGAATTACACTTGGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGGTCAGGAGGGTGGGACATCATTCTTGGAATTACACTTGGAATT  200

seq1  CCAGCCTCAGAAAGCAGAGGCAAGTGGTGTGTTCCCTAGGATAAGGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCAGAAAGCAGAGGCAAGTGGTGTGTTCCCTAGGATAAGGTGGC  250

seq1  TAAGACGAGTCACATCAGTGAGACAGACTGTGCTTTTTTTTTTAATTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACGAGTCACATCAGTGAGACAGACTGTGCTTTTTTTTTTAATTGTA  300

seq1  TATTTTCTTTATTTACATTTCAAATGCCCCTTTCTCAGTTTCCCCGTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTTATTTACATTTCAAATGCCCCTTTCTCAGTTTCCCCGTATC  350

seq1  CCATCCTCCCTCCCCCTGATTATGAGGGTGTTCCTCCACCCATCCATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTCCCTCCCCCTGATTATGAGGGTGTTCCTCCACCCATCCATCCA  400

seq1  CTACAACGTCCCCTCCCTGGATTTCCCTATGCTGGGGCATCTATCCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACGTCCCCTCCCTGGATTTCCCTATGCTGGGGCATCTATCCAGCC  450

seq1  ATCATAGGACCAAGGACCTCTCCTTCCACTGATGTCTGACAAGGCCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGGACCAAGGACCTCTCCTTCCACTGATGTCTGACAAGGCCATCC  500

seq1  TCTGCTAAATATGCAGCGCGAGCCAAGTGTACTCCTCAAGACTCCTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAAATATGCAGCGCGAGCCAAGTGTACTCCTCAAGACTCCTGAGA  550

seq1  ATCAAATAACCCTATTAACAGAGCTAAACAAAGAATTCTC  590
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATAACCCTATTAACAGAGCTAAACAAAGAATTCTC  590