BAC Information

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BAC

Clone NameB6Ng01-117B12
Chromosome7 (Build37)
Map Location 95,179,386 - 95,256,639
singlet/doubletdoublet
Overlap geneGrm5
Upstream geneEG621430, LOC621477, Nox4, Tyr
Downstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117B12.bB6Ng01-117B12.g
ACCDH921923DH921924
length1,1821,163
definitionDH921923|Mus musculus domesticus DNA, BAC clone: B6Ng01-117B12, 5' end.DH921924|Mus musculus domesticus DNA, BAC clone: B6Ng01-117B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,255,442 - 95,256,639)(95,179,386 - 95,180,550)
sequence
gaattcattaatagaaaataattcaatagatgtgtataatctcacttcac
aaacatttatctttcagtgttttaaaaaagtccctttcccccaagaaaac
ctaaaaaaaaaaaaaaaaaaaaaaaaaaagcaaaacactggagaataatt
taataaattacagcacaaagtagtatgaaaatatgttaaattttataaca
agttaagccttccatttagcttccacagaatttcttaaggacattgttta
accccacttacagagcacagttttcagagaagaagaatcttgagtccttg
gcttttcatgttagactttccttcaataccgctatttgtctcacaatcaa
gagaagtcttgaagacatggatttataagttagtcttaagacgctttcca
agtatacactatattcaagtaggaagccatttcagtctataggtaaatgt
taagcagagggtaaagctccacaagtatagggccaacctcaaggaacatt
tctgaaaaagtagtaattaaatgttatttgcatttttggatttatcccag
gtctgagcggttttcaggaaattttatgctaatacagttgagtttcttcc
cagtgggattttatccttacattttgtatgtaatgaaacagactggcctg
ggagtaagcagaatcttgagttataatgagaagatgagttattatttatt
ttgcacctactatacaacacactctattctaaagacatacccaaatgttc
tgatttaatcattatagtattgactagttactattcttgtttctatttta
tcaataagaaagtcctaggatattgggaaactgagtagtttgttcaaggt
caccagctagtactaataatatatatttcgtccaactcaaatgctagcta
caaatattatcagtaaccacagttttgtctttaagtagctcatgggacac
aggcaactttattaaatttcaaatctgtcatgatttcttttagattgtct
ggttcatgctgtggctcagctctatcctcaattttcttttctctctcaga
attacaaggcattttatttcacggaaataggtgaggtaggcataggagaa
ggaaatgggagttttaggtcagatattggtgtgtggttcatgagaggaac
tgaaggagagcagctactgtactgtatgctga
gaattccttgttgttctctgcatgtaagactctatgtgtccttcttgaca
cagatcccaactcttgcatactcatctcagaaacaacctcgaaaagccta
agaactaggaggacaggtagtcagagtaatgatcccagctctcagtatca
atttcctgttttcctgagtttttggtaactatgacaaaataattgacaaa
taaaatgaaaaagaaaggattgttttgggatcctattatgaggttttaat
ccatcatggatgacagatggtagggtagttataatatctctcagttatag
ttacaagaatataaggcttcttgatcatggaacacaggtaggacaaaaag
tggaagcagtatgccaacctcaagcctggtccctagtgatccttgtaatc
catccagttctcacctagtagatattcaataacctcctgaaacatctcca
ccacccaggacaaagtgagcaaactcatgagcacgtgggagacattttag
atttaaaccataaggcatagaaatcaattttgattcatccattaagatta
cttaagcatctttggctgtttttaaaccttattcatggatgaaattgcta
ttaaactatactatttttaattttaaaaaactgatctatctgtgatatag
actcctgagtttttgaatttacaaaagtttacatggctattatgtctcaa
tgtgctgtgcaaaagcaatccttaattaacacatcaatatttctatacca
ggacatatgaacatttcacactctgctctattaatggactataaataact
tcataaatgtcaggttttatcctgagataattttagataggtttatgtta
tgataccaaatgagttataaaaatatcatggttttcagagttctagggac
ttcaaaattgcacatgggaagcatgaaccttgactgttcattatcataat
ttaggtcacgggtttgaaaaacaggtttggtagccagtcaaatttagtat
aaagttaggagtacatagtacattcactattatactggtttctggtgaaa
aattgtattaacacctgagtggtaaggattatttcaggtatgtaaagatg
gctgcttagaaaaaagcaaactggctgggaaactgttccaaaagctgtct
aagagattctggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_95255442_95256639
seq2: B6Ng01-117B12.b_46_1227 (reverse)

seq1  TCAGCAACTACAGTAACAGTAAGCCTTGCTCTCCTTCCAGTGCTCCTCAT  50
      ||||||  |||||| ||||| |||  |||||||||| |||| |  |||||
seq2  TCAGCA--TACAGT-ACAGT-AGC--TGCTCTCCTT-CAGTTCCTCTCAT  43

seq1  GACACACACACATATA-CTGACCTAAAATACTCCAATCTCCTTCTCCTAT  99
      ||  |||||||  ||| ||||||||||  ||||| || ||||||||||||
seq2  GAACCACACACCAATATCTGACCTAAA--ACTCCCATTTCCTTCTCCTAT  91

seq1  GCCTACCTCACCTTATTTTCGTTGAAATAAAATGCCTTGTAAAATCTGAG  149
      |||||||||||| ||||| || |||||||||||||||||| || ||||||
seq2  GCCTACCTCACC-TATTTCCG-TGAAATAAAATGCCTTGT-AATTCTGAG  138

seq1  AGAGAAAAGAAAATTGAGGATAGAGCTGAGGCACAAGCATGAACCAAGAC  199
      |||||||||||||||||||||||||||||| ||| |||||||||| ||||
seq2  AGAGAAAAGAAAATTGAGGATAGAGCTGAGCCAC-AGCATGAACC-AGAC  186

seq1  AATCTAAAAGAAATCATGACAAGATTTTGAAAATTTAATATAGTTGCCTG  249
      |||||||||||||||||||| ||||||   |||||||||| |||||||||
seq2  AATCTAAAAGAAATCATGAC-AGATTT--GAAATTTAATAAAGTTGCCTG  233

seq1  TGTCCCATGAGCTACTTAAAGACAAAACTGTGGTTACTGATAATATTTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCATGAGCTACTTAAAGACAAAACTGTGGTTACTGATAATATTTGT  283

seq1  AGCTAGCATTTGAGTTGGACGAAATATATATTATTAGTACTAGCTGGTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCATTTGAGTTGGACGAAATATATATTATTAGTACTAGCTGGTGA  333

seq1  CCTTGAACAAACTACTCAGTTTCCCAATATCCTAGGACTTTCTTATTGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACAAACTACTCAGTTTCCCAATATCCTAGGACTTTCTTATTGAT  383

seq1  AAAATAGAAACAAGAATAGTAACTAGTCAATACTATAATGATTAAATCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAAACAAGAATAGTAACTAGTCAATACTATAATGATTAAATCAG  433

seq1  AACATTTGGGTATGTCTTTAGAATAGAGTGTGTTGTATAGTAGGTGCAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGGGTATGTCTTTAGAATAGAGTGTGTTGTATAGTAGGTGCAAA  483

seq1  ATAAATAATAACTCATCTTCTCATTATAACTCAAGATTCTGCTTACTCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAATAACTCATCTTCTCATTATAACTCAAGATTCTGCTTACTCCC  533

seq1  AGGCCAGTCTGTTTCATTACATACAAAATGTAAGGATAAAATCCCACTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGTCTGTTTCATTACATACAAAATGTAAGGATAAAATCCCACTGG  583

seq1  GAAGAAACTCAACTGTATTAGCATAAAATTTCCTGAAAACCGCTCAGACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACTCAACTGTATTAGCATAAAATTTCCTGAAAACCGCTCAGACC  633

seq1  TGGGATAAATCCAAAAATGCAAATAACATTTAATTACTACTTTTTCAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAAATCCAAAAATGCAAATAACATTTAATTACTACTTTTTCAGAA  683

seq1  ATGTTCCTTGAGGTTGGCCCTATACTTGTGGAGCTTTACCCTCTGCTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCTTGAGGTTGGCCCTATACTTGTGGAGCTTTACCCTCTGCTTAA  733

seq1  CATTTACCTATAGACTGAAATGGCTTCCTACTTGAATATAGTGTATACTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACCTATAGACTGAAATGGCTTCCTACTTGAATATAGTGTATACTT  783

seq1  GGAAAGCGTCTTAAGACTAACTTATAAATCCATGTCTTCAAGACTTCTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCGTCTTAAGACTAACTTATAAATCCATGTCTTCAAGACTTCTCT  833

seq1  TGATTGTGAGACAAATAGCGGTATTGAAGGAAAGTCTAACATGAAAAGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTGAGACAAATAGCGGTATTGAAGGAAAGTCTAACATGAAAAGCC  883

seq1  AAGGACTCAAGATTCTTCTTCTCTGAAAACTGTGCTCTGTAAGTGGGGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTCAAGATTCTTCTTCTCTGAAAACTGTGCTCTGTAAGTGGGGTT  933

seq1  AAACAATGTCCTTAAGAAATTCTGTGGAAGCTAAATGGAAGGCTTAACTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGTCCTTAAGAAATTCTGTGGAAGCTAAATGGAAGGCTTAACTT  983

seq1  GTTATAAAATTTAACATATTTTCATACTACTTTGTGCTGTAATTTATTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAAATTTAACATATTTTCATACTACTTTGTGCTGTAATTTATTAA  1033

seq1  ATTATTCTCCAGTGTTTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTCCAGTGTTTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTAGG  1083

seq1  TTTTCTTGGGGGAAAGGGACTTTTTTAAAACACTGAAAGATAAATGTTTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGGGGGAAAGGGACTTTTTTAAAACACTGAAAGATAAATGTTTG  1133

seq1  TGAAGTGAGATTATACACATCTATTGAATTATTTTCTATTAATGAATTC  1198
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGAGATTATACACATCTATTGAATTATTTTCTATTAATGAATTC  1182

seq1: chr7_95179386_95180550
seq2: B6Ng01-117B12.g_80_1229

seq1  TTCTCTGCATGTAAGACTCTATGTGTCCTTCTTGACACAGATCCCAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCATGTAAGACTCTATGTGTCCTTCTTGACACAGATCCCAACTC  50

seq1  TTGCATACTCATCTCAGAAACAACCTCGAAAAGCCTAAGAACTAGGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATACTCATCTCAGAAACAACCTCGAAAAGCCTAAGAACTAGGAGGA  100

seq1  CAGGTAGTCAGAGTAATGATCCCAGCTCTCAGTATCAATTTCCTGTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGTCAGAGTAATGATCCCAGCTCTCAGTATCAATTTCCTGTTTTC  150

seq1  CTGAGTTTTTGGTAACTATGACAAAATAATTGACAAATAAAATGAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTTTGGTAACTATGACAAAATAATTGACAAATAAAATGAAAAAG  200

seq1  AAAGGATTGTTTTGGGATCCTATTATGAGGTTTTAATCCATCATGGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTGTTTTGGGATCCTATTATGAGGTTTTAATCCATCATGGATGA  250

seq1  CAGATGGTAGGGTAGTTATAATATCTCTCAGTTATAGTTACAAGAATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTAGGGTAGTTATAATATCTCTCAGTTATAGTTACAAGAATATA  300

seq1  AGGCTTCTTGATCATGGAACACAGGTAGGACAAAAAGTGGAAGCAGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTTGATCATGGAACACAGGTAGGACAAAAAGTGGAAGCAGTATG  350

seq1  CCAACCTCAAGCCTGGTCCCTAGTGATCCTTGTAATCCATCCAGTTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTCAAGCCTGGTCCCTAGTGATCCTTGTAATCCATCCAGTTCTCA  400

seq1  CCTAGTAGATATTCAATAACCTCCTGAAACATCTCCACCACCCAGGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTAGATATTCAATAACCTCCTGAAACATCTCCACCACCCAGGACAA  450

seq1  AGTGAGCAAACTCATGAGCACGTGGGAGACATTTTAGATTTAAACCATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCAAACTCATGAGCACGTGGGAGACATTTTAGATTTAAACCATAA  500

seq1  GGCATAGAAATCAATTTTGATTCATCCATTAAGATTACTTAAGCATCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGAAATCAATTTTGATTCATCCATTAAGATTACTTAAGCATCTTT  550

seq1  GGCTGTTTTTAAACCTTATTCATGGATGAAATTGCTATTAAACTATACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTTTAAACCTTATTCATGGATGAAATTGCTATTAAACTATACTA  600

seq1  TTTTTAATTTTAAAAAACTGATCTATCTGTGATATAGACTCCTGAGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTTTAAAAAACTGATCTATCTGTGATATAGACTCCTGAGTTTT  650

seq1  TGAATTTACAAAAGTTTACATGGCTATTATGTCTCAATGTGCTGTGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTACAAAAGTTTACATGGCTATTATGTCTCAATGTGCTGTGCAAA  700

seq1  AGCAATCCTTAATTAACACATCAATATTTCTATACCAGGACATATGAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCCTTAATTAACACATCAATATTTCTATACCAGGACATATGAACA  750

seq1  TTTCACACTCTGCTCTATTAATGGACTATAAATAACTTCATAAATGTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACACTCTGCTCTATTAATGGACTATAAATAACTTCATAAATGTCAG  800

seq1  GTTTTATCCTGAGATAATTTTAGATAGGTTTATGTTATGATACCAAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATCCTGAGATAATTTTAGATAGGTTTATGTTATGATACCAAATGA  850

seq1  GTTATAAAAATATCATGGTTTTCAGAGTTCTAGGGACTTCAAAATTGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAAAATATCATGGTTTTCAGAGTTCTAGGGACTTCAAAATTGCAC  900

seq1  ATGGGAAGCATGAACCTTGACTGTTCATTATCAATAATTTAGGTCACGGG  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATGGGAAGCATGAACCTTGACTGTTCATTATC-ATAATTTAGGTCACGGG  949

seq1  TTTGAAAAACAGGTTTTGTAAGCCAAGTCAAAATTTTAGTAATAAAGTTT  1000
      |||||||||||||||| || |||| |||||||  |||||| |||||| ||
seq2  TTTGAAAAACAGGTTTGGT-AGCC-AGTCAAA--TTTAGT-ATAAAG-TT  993

seq1  TAGAGTACATAGTAACATTCAACTAATTATACT-GTGTCT-GTGAATATA  1048
        ||||||||||| |||||| ||| |||||||| || ||| ||||| | |
seq2  AGGAGTACATAGT-ACATTC-ACT-ATTATACTGGTTTCTGGTGAA-AAA  1039

seq1  TTGTATTAACAACACTGAGTTGTTAAAGATTATTTCAAGTATGTTAAAGA  1098
      |||||||||||   ||||| || ||| |||||||||| ||||| ||||||
seq2  TTGTATTAACA--CCTGAG-TGGTAAGGATTATTTCAGGTATG-TAAAGA  1085

seq1  T-GCTGCCTAGTATAAAAAGCAAAACTTGCTGGGAAACTG-TCAAAAAGC  1146
      | ||||| |||   ||||||| ||||| |||||||||||| || ||||||
seq2  TGGCTGCTTAG--AAAAAAGC-AAACTGGCTGGGAAACTGTTCCAAAAGC  1132

seq1  TGGTCTTAAGAGA-TCTGGC  1165
      | ||| ||||||| ||||||
seq2  T-GTC-TAAGAGATTCTGGC  1150