BAC Information

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BAC

Clone NameB6Ng01-118C19
Chromosome7 (Build37)
Map Location 130,186,715 - 130,327,078
singlet/doubletdoublet
Overlap geneTnrc6a
Upstream geneEars2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486, Cacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981
Downstream geneSlc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482, EG628779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118C19.bB6Ng01-118C19.g
ACCDH922724DH922725
length6341,203
definitionDH922724|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C19, 5' end.DH922725|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,186,715 - 130,187,348)(130,325,857 - 130,327,078)
sequence
gaattcagttagtagaacacagtctgtctcagccctatcatttgcatacc
attgtttattcgtgtaaaatttgctttttgttactactatgttgtgttgt
gactccgattaacaaaaatagattaatgactaaaatgtggttcactggag
tgtaagagcaatgataaaaatagttccagccattgctgcagaggcttaat
gagagaacaggacttccagatcatctgtggtgcgatgaattcaccagcgt
ggctggtggggaaagtgtgaatgggaaaggcggctgtggagatctggaaa
ttggatttcactgaacaagagattgcctgcaccggatcttccattagcaa
ctttgtcaggttgctgcgtgactcggccagagatttcacatcatttccaa
aatggaattacctgggcgaccaaccagtgttcttcagccacatgcaatat
aaactggggttggatctcagtggtcgagagcttccctgactcatgtgatc
acagctgtgggggtctgtccctggacttgaaagaaaaagtgttgagttcc
tagtttagtaatcactcaactttaaaacacaatttaattaattgagttta
ttttttattgcatatttatttgttttgtgtgtgt
gaattctctgaagtcattccaagttcaatttttgcagaaagcaatcaaat
ttgtgcccttagacctatgaattagaccaagaatttgcaaaaattttgca
taaaggtttaaaaggtagcctggagaatatatgggctatatagctttctc
tatgtcactatgcaaaagcatccacagataaagttaaaacaaacaaacaa
acaaacatacatagctccatcccaataaaactttctttgtgaaattaaga
cagtgggccaaattttgctcacaggctacagagtgacgtctgtgtgaatg
aagcggaagggacaggctgtcaggagaagtagccccgtcatcatcagtgg
cctctgtactgtctagcacagctgtaactgacagtgggaactgctcctgc
taaccatcgcaaggacgtacgtcctagctcagtgtctattatgtaagacc
aaaagaaccgaataagaaacttcccaatcagagaatcaccagcagaagca
catcccccaagcactgtttacagcccacaatatgctgagagaactaatgg
tcttcaacagagctggggtagtaaccagctacccatgagtaacaactcat
ctatatgaaactgttgttcagatgggggagggataacagacaaaggaagt
ttggttaaccaagaatcaaaacataatcaggaacctgggaaagagaaaac
acacacaccttacatttcctcaataaatagaaagcctgcttatacagtgg
agaaaatgaaagacaatttctcttcacatccattctgctaagacaagtga
caacataatgggactatccccagtattttccagagcagtgcctgcatacc
atctctctcccaaacaacactgccatgccgtgagtcttcctgcacctgca
cattctacagtctgagtctgaaaatgagtgtgtcctttagtggtacctcc
caataggtagaagcacctgaaatactgcgacatcatccctgaagcatgag
atgacttatctagacaagtgcgttacgcttctgatagcctgtgctaggac
aggctgcaaagcagtggagaccgtgtgtttagtgttccgagcaggacctc
actataggaaagtgctgaagcattttactgcatggcttttctggcagact
cgagtatgtgtgggcatgacctgtcagagacttcatggctgcctgatgga
gcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_130186715_130187348
seq2: B6Ng01-118C19.b_41_674

seq1  GAATTCAGTTAGTAGAACACAGTCTGTCTCAGCCCTATCATTTGCATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAGTAGAACACAGTCTGTCTCAGCCCTATCATTTGCATACC  50

seq1  ATTGTTTATTCGTGTAAAATTTGCTTTTTGTTACTACTATGTTGTGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTATTCGTGTAAAATTTGCTTTTTGTTACTACTATGTTGTGTTGT  100

seq1  GACTCCGATTAACAAAAATAGATTAATGACTAAAATGTGGTTCACTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCGATTAACAAAAATAGATTAATGACTAAAATGTGGTTCACTGGAG  150

seq1  TGTAAGAGCAATGATAAAAATAGTTCCAGCCATTGCTGCAGAGGCTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAGCAATGATAAAAATAGTTCCAGCCATTGCTGCAGAGGCTTAAT  200

seq1  GAGAGAACAGGACTTCCAGATCATCTGTGGTGCGATGAATTCACCAGCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACAGGACTTCCAGATCATCTGTGGTGCGATGAATTCACCAGCGT  250

seq1  GGCTGGTGGGGAAAGTGTGAATGGGAAAGGCGGCTGTGGAGATCTGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGGGGAAAGTGTGAATGGGAAAGGCGGCTGTGGAGATCTGGAAA  300

seq1  TTGGATTTCACTGAACAAGAGATTGCCTGCACCGGATCTTCCATTAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTCACTGAACAAGAGATTGCCTGCACCGGATCTTCCATTAGCAA  350

seq1  CTTTGTCAGGTTGCTGCGTGACTCGGCCAGAGATTTCACATCATTTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCAGGTTGCTGCGTGACTCGGCCAGAGATTTCACATCATTTCCAA  400

seq1  AATGGAATTACCTGGGCGACCAACCAGTGTTCTTCAGCCACATGCAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATTACCTGGGCGACCAACCAGTGTTCTTCAGCCACATGCAATAT  450

seq1  AAACTGGGGTTGGATCTCAGTGGTCGAGAGCTTCCCTGACTCATGTGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGGTTGGATCTCAGTGGTCGAGAGCTTCCCTGACTCATGTGATC  500

seq1  ACAGCTGTGGGGGTCTGTCCCTGGACTTGAAAGAAAAAGTGTTGAGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTGGGGGTCTGTCCCTGGACTTGAAAGAAAAAGTGTTGAGTTCC  550

seq1  TAGTTTAGTAATCACTCAACTTTAAAACACAATTTAATTAATTGAGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAGTAATCACTCAACTTTAAAACACAATTTAATTAATTGAGTTTA  600

seq1  TTTTTTATTGCATATTTATTTGTTTTGTGTGTGT  634
      ||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTGCATATTTATTTGTTTTGTGTGTGT  634

seq1: chr7_130325857_130327078
seq2: B6Ng01-118C19.g_70_1272 (reverse)

seq1  CGCTCCATCAGCCAGCCATGAAGTCCTTCCTTGACAATGTCATGCCCCAC  50
      ||||||||||| |||||||||||||  ||  |||| | |||||| |||||
seq2  CGCTCCATCAGGCAGCCATGAAGTC--TC--TGAC-AGGTCATG-CCCAC  44

seq1  ACTACACCCGAG-CTG-CAGAAAGGGCCATCGCCAGT-AAATGCTTTCAG  97
      || | || |||| ||| ||||||  |||||   |||| |||||| |||||
seq2  AC-ATACTCGAGTCTGCCAGAAA-AGCCAT--GCAGTAAAATGC-TTCAG  89

seq1  CAACTTTCCTATAGGTGAGTTCCTGCTCGGAACACTATACACACGTGTCT  147
      | ||||||||||| ||||| ||||||||||||||||| ||||||| ||||
seq2  C-ACTTTCCTATA-GTGAGGTCCTGCTCGGAACACTAAACACACG-GTCT  136

seq1  CCACTGCCTTTGCAGCCCTGTCCTAGCACCAGGCTTATCAG-AGCGTAAC  196
      |||||| |||||||| |||||||||||| ||||| |||||| ||||||||
seq2  CCACTG-CTTTGCAG-CCTGTCCTAGCA-CAGGC-TATCAGAAGCGTAAC  182

seq1  GCACTTTGTTCTAGATTAAGTCATCTTCATGCTTCAGGGGTGGTGTCGCA  246
      ||||||   |||||| ||||||||| ||||||||||||| || |||||||
seq2  GCACTT--GTCTAGA-TAAGTCATC-TCATGCTTCAGGGATGATGTCGCA  228

seq1  GTATTTCAGGTGCTTCTACCTATTGGGAGGTACCAACTAAAGGACACACT  296
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTATTTCAGGTGCTTCTACCTATTGGGAGGTACC-ACTAAAGGACACACT  277

seq1  CATTTTCAGACTCAGACTGTAGAATGTGCAGGTGCAGGAAGACTCACGGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAGACTCAGACTGTAGAATGTGCAGGTGCAGGAAGACTCACGGC  327

seq1  ATGGCAGTGTTGTTTGGGAGAGAGATGGTATGCAGGCACTGCTCTGGAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGTGTTGTTTGGGAGAGAGATGGTATGCAGGCACTGCTCTGGAAA  377

seq1  ATACTGGGGATAGTCCCATTATGTTGTCACTTGTCTTAGCAGAATGGATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGGGATAGTCCCATTATGTTGTCACTTGTCTTAGCAGAATGGATG  427

seq1  TGAAGAGAAATTGTCTTTCATTTTCTCCACTGTATAAGCAGGCTTTCTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGAAATTGTCTTTCATTTTCTCCACTGTATAAGCAGGCTTTCTAT  477

seq1  TTATTGAGGAAATGTAAGGTGTGTGTGTTTTCTCTTTCCCAGGTTCCTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAGGAAATGTAAGGTGTGTGTGTTTTCTCTTTCCCAGGTTCCTGA  527

seq1  TTATGTTTTGATTCTTGGTTAACCAAACTTCCTTTGTCTGTTATCCCTCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTTGATTCTTGGTTAACCAAACTTCCTTTGTCTGTTATCCCTCC  577

seq1  CCCATCTGAACAACAGTTTCATATAGATGAGTTGTTACTCATGGGTAGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTGAACAACAGTTTCATATAGATGAGTTGTTACTCATGGGTAGCT  627

seq1  GGTTACTACCCCAGCTCTGTTGAAGACCATTAGTTCTCTCAGCATATTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTACCCCAGCTCTGTTGAAGACCATTAGTTCTCTCAGCATATTGT  677

seq1  GGGCTGTAAACAGTGCTTGGGGGATGTGCTTCTGCTGGTGATTCTCTGAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTAAACAGTGCTTGGGGGATGTGCTTCTGCTGGTGATTCTCTGAT  727

seq1  TGGGAAGTTTCTTATTCGGTTCTTTTGGTCTTACATAATAGACACTGAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTTTCTTATTCGGTTCTTTTGGTCTTACATAATAGACACTGAGC  777

seq1  TAGGACGTACGTCCTTGCGATGGTTAGCAGGAGCAGTTCCCACTGTCAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACGTACGTCCTTGCGATGGTTAGCAGGAGCAGTTCCCACTGTCAGT  827

seq1  TACAGCTGTGCTAGACAGTACAGAGGCCACTGATGATGACGGGGCTACTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTGTGCTAGACAGTACAGAGGCCACTGATGATGACGGGGCTACTT  877

seq1  CTCCTGACAGCCTGTCCCTTCCGCTTCATTCACACAGACGTCACTCTGTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACAGCCTGTCCCTTCCGCTTCATTCACACAGACGTCACTCTGTA  927

seq1  GCCTGTGAGCAAAATTTGGCCCACTGTCTTAATTTCACAAAGAAAGTTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGAGCAAAATTTGGCCCACTGTCTTAATTTCACAAAGAAAGTTTT  977

seq1  ATTGGGATGGAGCTATGTATGTTTGTTTGTTTGTTTGTTTTAACTTTATC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGATGGAGCTATGTATGTTTGTTTGTTTGTTTGTTTTAACTTTATC  1027

seq1  TGTGGATGCTTTTGCATAGTGACATAGAGAAAGCTATATAGCCCATATAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGCTTTTGCATAGTGACATAGAGAAAGCTATATAGCCCATATAT  1077

seq1  TCTCCAGGCTACCTTTTAAACCTTTATGCAAAATTTTTGCAAATTCTTGG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGCTACCTTTTAAACCTTTATGCAAAATTTTTGCAAATTCTTGG  1127

seq1  TCTAATTCATAGGTCTAAGGGCACAAATTTGATTGCTTTCTGCAAAAATT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCATAGGTCTAAGGGCACAAATTTGATTGCTTTCTGCAAAAATT  1177

seq1  GAACTTGGAATGACTTCAGAGAATTC  1222
      ||||||||||||||||||||||||||
seq2  GAACTTGGAATGACTTCAGAGAATTC  1203