BAC Information

Click to search

BAC

Clone NameB6Ng01-118O18
Chromosome7 (Build37)
Map Location 37,136,581 - 37,297,723
singlet/doubletdoublet
Overlap genenone
Upstream geneRhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
Downstream geneTshz3, LOC100043874, Zfp536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118O18.bB6Ng01-118O18.g
ACCDH923270DH923271
length1,0821,101
definitionDH923270|Mus musculus domesticus DNA, BAC clone: B6Ng01-118O18, 5' end.DH923271|Mus musculus domesticus DNA, BAC clone: B6Ng01-118O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,296,639 - 37,297,723)(37,136,581 - 37,137,699)
sequence
gaattctcagtctgtgatacatagggattacaaaggtgaccgcactgctt
ggttgctggaatgttctagaaggatgtggaagaagagacctttacatagg
acacgtagtcagattctgctgtatgccttggatctccctggaagagccat
ggttcttggttctgaaatctcagcttgtaggagatccactcgggttgcca
gcatgaatatagcacaccgagtcttagttcagcttcacacacccaccctt
cggacactccaatcaaagactgttatgcctactaactccttaagtgtcaa
cagcttaatgtgcaggcctcttgccactggagtcttcttttccgtaggtc
actcggtcactgagtccctcctctggtgtggtctcagccagctgagaaca
gctgtaggcaaaacagtcccgggtggtgttacccatgagaactcaggcaa
agagaccactcctttctcactgttcctttctggagacagatgggcacagg
atcatgcaggagatagggtctcatctatgcccgcatcctggctggtcaca
cagaaatagttttcaatggagtctggatgctggcattgcctgttttggtc
cacacaagaggaattcttgggattattacccagttgagaatgaaaacatg
gattgccagggatggattttacattgaccccgagtttataaaaacttctg
gtggcattcactcttggtgtatgtgtagtacattgctgcttgctgcatgc
tttcttccaattaggtggcatcatttaaccttccccatagcccagagtct
gggtccaacaagtctcatttgatttgaaaggaaatggaggctcagagagt
ctaaaaatcttggcgggatcaaaatggctgaggagtaggtgtgtggtcat
gcgaaccagatgggaccacatcaggggtccttgctttgtgtttatgttgt
acccatgagaagtttctgggactagtagacttgatgcacaatttgagctc
acagagcccgagatctgtgcacttgttttcaaagttatgcaaatcatttg
aatcaattaaatggtagtggtggtggtgtggt
gaattcaggtgccgctgttggggtcagaatgagcagcccacccatgggac
aatccagagcagccactttcggtctgatcaccacgcttgccctggggaaa
actcagtcgtcaaaggttgagaggagctacccagactcacggtccctcta
ggtcagagtggggaagcatggctggaatgctgtgctcattgagtgtctgg
gaggagtgagaaattggagctacgtcaggagggaggtaaggatggggctg
accttggtctttgttgatgaggaaaggaagtaccctcacgtgacaggaga
gatttgtttgcttgggaactcattttcaacagcctcaggtagaaagaatt
aaaccatctgtttgctctgaatgagcccaaatcccctccctaaggtacaa
atggtggttttacgaaattcctgctcctgagaaaacccattcaggtagca
tttgtttctctggctgtaagcagggaggaaacttgtgatatctgaagaga
agaaatcactttaagtaagtttcagatgtctggaatggcagttggaaaat
gtgaggaggacggtcagtgcctggggtggtcaattatattttggggttcc
aatgggggggtagtttccagctggcaaatatcttttcccacaatcacccc
aacattgcaccttcctcagacagaatcccacaagactgctctttctacct
cgtgtgactgccattctcttggatgatcttttgagtgcagagagataagg
tgccagggcattaccccttaggatgtggactccttagatgaagagtcaat
gcaaaaggggaaggaaaacaacatgaagaccccttccccattcctaacag
tctagtaagggtcctgcgatggagtggaatggggtagattctggctcagc
atcatgagagcttaggggcatagaggaaggatggaaagcatagagagtct
tgctgtgaggctggggtggtctcaagtctttcttcatggctgaagcagta
aggaaaaaaggatcagagaggccatgaaacaagtccctggactgacgttc
ctctgtgggctctgattgattatgggacaagagttggttagctgttggcc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_37296639_37297723
seq2: B6Ng01-118O18.b_47_1128 (reverse)

seq1  ACCACCACCACCACCACTACCATTTAATTGATTCAAATGATTTGCATAAC  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCA-CACCACCACCACTACCATTTAATTGATTCAAATGATTTGCATAAC  49

seq1  TTTTGAAAAC-AGTGCACAGATCTCGGGCTCTGTTGAGCTTCAAATTGTG  99
       ||||||||| |||||||||||||||||||||| ||||| ||||||||||
seq2  -TTTGAAAACAAGTGCACAGATCTCGGGCTCTG-TGAGC-TCAAATTGTG  96

seq1  CATCAAGTCTACTAGTCCCAGAAACTTCCTCATGGGTACAACATAAACAC  149
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CATCAAGTCTACTAGTCCCAGAAACTT-CTCATGGGTACAACATAAACAC  145

seq1  AAAGCAAGGACCCCTGATGTGGTCCCATCTGGTTCGCATGACCACACACC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGGACCCCTGATGTGGTCCCATCTGGTTCGCATGACCACACACC  195

seq1  TACTCCTCAGCCA-TTTGATCCCGCCAAGATTTTTAGACTCTCTGAGCCT  248
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TACTCCTCAGCCATTTTGATCCCGCCAAGATTTTTAGACTCTCTGAGCCT  245

seq1  CCATTTCCTTTCAAATCAAATGAGACTTGTTGGACCCAGACTCTGGGCTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCTTTCAAATCAAATGAGACTTGTTGGACCCAGACTCTGGGCTA  295

seq1  TGGGGAAGGTTAAATGATGCCACCTAATTGGAAGAAAGCATGCAGCAAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGGTTAAATGATGCCACCTAATTGGAAGAAAGCATGCAGCAAGC  345

seq1  AGCAATGTACTACACATACACCAAGAGTGAATGCCACCAGAAGTTTTTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGTACTACACATACACCAAGAGTGAATGCCACCAGAAGTTTTTAT  395

seq1  AAACTCGGGGTCAATGTAAAATCCATCCCTGGCAATCCATGTTTTCATTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCGGGGTCAATGTAAAATCCATCCCTGGCAATCCATGTTTTCATTC  445

seq1  TCAACTGGGTAATAATCCCAAGAATTCCTCTTGTGTGGACCAAAACAGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGGGTAATAATCCCAAGAATTCCTCTTGTGTGGACCAAAACAGGC  495

seq1  AATGCCAGCATCCAGACTCCATTGAAAACTATTTCTGTGTGACCAGCCAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGCATCCAGACTCCATTGAAAACTATTTCTGTGTGACCAGCCAG  545

seq1  GATGCGGGCATAGATGAGACCCTATCTCCTGCATGATCCTGTGCCCATCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCGGGCATAGATGAGACCCTATCTCCTGCATGATCCTGTGCCCATCT  595

seq1  GTCTCCAGAAAGGAACAGTGAGAAAGGAGTGGTCTCTTTGCCTGAGTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGAAAGGAACAGTGAGAAAGGAGTGGTCTCTTTGCCTGAGTTCT  645

seq1  CATGGGTAACACCACCCGGGACTGTTTTGCCTACAGCTGTTCTCAGCTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTAACACCACCCGGGACTGTTTTGCCTACAGCTGTTCTCAGCTGG  695

seq1  CTGAGACCACACCAGAGGAGGGACTCAGTGACCGAGTGACCTACGGAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACCACACCAGAGGAGGGACTCAGTGACCGAGTGACCTACGGAAAA  745

seq1  GAAGACTCCAGTGGCAAGAGGCCTGCACATTAAGCTGTTGACACTTAAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTCCAGTGGCAAGAGGCCTGCACATTAAGCTGTTGACACTTAAGG  795

seq1  AGTTAGTAGGCATAACAGTCTTTGATTGGAGTGTCCGAAGGGTGGGTGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTAGGCATAACAGTCTTTGATTGGAGTGTCCGAAGGGTGGGTGTG  845

seq1  TGAAGCTGAACTAAGACTCGGTGTGCTATATTCATGCTGGCAACCCGAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGAACTAAGACTCGGTGTGCTATATTCATGCTGGCAACCCGAGT  895

seq1  GGATCTCCTACAAGCTGAGATTTCAGAACCAAGAACCATGGCTCTTCCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCCTACAAGCTGAGATTTCAGAACCAAGAACCATGGCTCTTCCAG  945

seq1  GGAGATCCAAGGCATACAGCAGAATCTGACTACGTGTCCTATGTAAAGGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCCAAGGCATACAGCAGAATCTGACTACGTGTCCTATGTAAAGGT  995

seq1  CTCTTCTTCCACATCCTTCTAGAACATTCCAGCAACCAAGCAGTGCGGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTCCACATCCTTCTAGAACATTCCAGCAACCAAGCAGTGCGGTC  1045

seq1  ACCTTTGTAATCCCTATGTATCACAGACTGAGAATTC  1085
      |||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGTAATCCCTATGTATCACAGACTGAGAATTC  1082

seq1: chr7_37136581_37137699
seq2: B6Ng01-118O18.g_69_1169

seq1  GAATTCAGGTGCCGCTGTTGGGGTCAGAATGAGCAGCCCACCCATGGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGCCGCTGTTGGGGTCAGAATGAGCAGCCCACCCATGGGAC  50

seq1  AATCCAGAGCAGCCACTTTCGGTCTGATCACCACGCTTGCCCTGGGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGAGCAGCCACTTTCGGTCTGATCACCACGCTTGCCCTGGGGAAA  100

seq1  ACTCAGTCGTCAAAGGTTGAGAGGAGCTACCCAGACTCACGGTCCCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTCGTCAAAGGTTGAGAGGAGCTACCCAGACTCACGGTCCCTCTA  150

seq1  GGTCAGAGTGGGGAAGCATGGCTGGAATGCTGTGCTCATTGAGTGTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGTGGGGAAGCATGGCTGGAATGCTGTGCTCATTGAGTGTCTGG  200

seq1  GAGGAGTGAGAAATTGGAGCTACGTCAGGAGGGAGGTAAGGATGGGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTGAGAAATTGGAGCTACGTCAGGAGGGAGGTAAGGATGGGGCTG  250

seq1  ACCTTGGTCTTTGTTGATGAGGAAAGGAAGTACCCTCACGTGACAGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTCTTTGTTGATGAGGAAAGGAAGTACCCTCACGTGACAGGAGA  300

seq1  GATTTGTTTGCTTGGGAACTCATTTTCAACAGCCTCAGGTAGAAAGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTTTGCTTGGGAACTCATTTTCAACAGCCTCAGGTAGAAAGAATT  350

seq1  AAACCATCTGTTTGCTCTGAATGAGCCCAAATCCCCTCCCTAAGGTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATCTGTTTGCTCTGAATGAGCCCAAATCCCCTCCCTAAGGTACAA  400

seq1  ATGGTGGTTTTACGAAATTCCTGCTCCTGAGAAAACCCATTCAGGTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTTTTACGAAATTCCTGCTCCTGAGAAAACCCATTCAGGTAGCA  450

seq1  TTTGTTTCTCTGGCTGTAAGCAGGGAGGAAACTTGTGATATCTGAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTCTGGCTGTAAGCAGGGAGGAAACTTGTGATATCTGAAGAGA  500

seq1  AGAAATCACTTTAAGTAAGTTTCAGATGTCTGGAATGGCAGTTGGAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCACTTTAAGTAAGTTTCAGATGTCTGGAATGGCAGTTGGAAAAT  550

seq1  GTGAGGAGGACGGTCAGTGCCTGGGGTGGTCAATTATATTTTGGGGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAGGACGGTCAGTGCCTGGGGTGGTCAATTATATTTTGGGGTTCC  600

seq1  AATGGGGGGGTAGTTTCCAGCTGGCAAATATCTTTTCCCACAATCACCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGGGGTAGTTTCCAGCTGGCAAATATCTTTTCCCACAATCACCCC  650

seq1  AACATTGCACCTTCCTCAGACAGAATCCCACAAGACTGCTCTTTCTACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGCACCTTCCTCAGACAGAATCCCACAAGACTGCTCTTTCTACCT  700

seq1  CGTGTGACTGCCATTCTCTTGGATGATCTTTTGAGTGCAGAGAGATAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGACTGCCATTCTCTTGGATGATCTTTTGAGTGCAGAGAGATAAGG  750

seq1  TGCCAGGGCATTACCCCTTAGGATGTGGACTCCTTAGATGAAGAGTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGCCAGGGCATTACCCCTTAGGATGTGGACTCCTTAGATGAAGAGTC-AA  799

seq1  TGCAAAAGGGGAAGGAAAACAACATGAAGACCCCTTCCCCATTCCTAAAC  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCAAAAGGGGAAGGAAAACAACATGAAGACCCCTTCCCCATTCCT-AAC  848

seq1  AGTCTAGTAAGGGTCCTGCGATGGAGTGGAATGGGGTAGATTCTGGCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGTAAGGGTCCTGCGATGGAGTGGAATGGGGTAGATTCTGGCTCA  898

seq1  GCATCATGAGAGCTTAGGGGCATAGAGGAAGGAAGGAAAGCATAGAGAGT  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCATCATGAGAGCTTAGGGGCATAGAGGAAGGATGGAAAGCATAGAGAGT  948

seq1  CTTGCTTGTGAAGGCTGGGGTGGTCCCAAGCCTTTCTTCATGGCTGAAGC  1000
      ||||| |||| |||||||||||||| |||| |||||||||||||||||||
seq2  CTTGC-TGTG-AGGCTGGGGTGGTCTCAAGTCTTTCTTCATGGCTGAAGC  996

seq1  AGTAAAGGAAAAAAAAGGATTCAGAGAGAGCCATGAAAACAAAGTCTCT-  1049
      ||||| |   ||||||||| |||||||| |||||||||   ||||| || 
seq2  AGTAAGG---AAAAAAGGA-TCAGAGAG-GCCATGAAA--CAAGTCCCTG  1039

seq1  GACTGAACGTTTCCATCTGT-GGCTCTGATTGAATTATGGGGAACAAGAA  1098
      ||||| |||||  | ||||| ||||||||||| ||||||||  ||||| |
seq2  GACTG-ACGTT--CCTCTGTGGGCTCTGATTG-ATTATGGG--ACAAG-A  1082

seq1  GTTTGGGTAAGCTGTTGGCCA  1119
      |||  ||| ||||||||||||
seq2  GTT--GGTTAGCTGTTGGCCA  1101