BAC Information

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BAC

Clone NameB6Ng01-121B11
Chromosome1 (Build37)7 (Build37)
Map Location 129,461,566 - 129,462,42451,012,593 - 51,013,086
singlet/doubletsingletsinglet
Overlap geneTmem163
Upstream geneE030049G20Rik, LOC383559, Mgat5, LOC667090
Downstream geneAcmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121B11.bB6Ng01-121B11.g
ACCDH924863DH924864
length871625
definitionDH924863|Mus musculus domesticus DNA, BAC clone: B6Ng01-121B11, 5' end.DH924864|Mus musculus domesticus DNA, BAC clone: B6Ng01-121B11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(129,461,566 - 129,462,424)(51,012,593 - 51,013,086)
sequence
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagtttttttctcgtcccgggtttcggcaccaattgttattag
acgcgttctcacgcccggccaggaaagacgcaacaaaccaaaatcttctg
cggcaaaactttattgcttacatctttgggagccaggagggcaagcgccc
agcgcccagccccaaaaacgaaagccccttcaataatgaaaccgaaaccc
cttccctctttaggagagttatatttcgcctaggacgcatcactccctga
ttggctgcagcccatggccgagctgacgttcacgggaaaggtagagtaca
agtagtcataaaatacccttggctcatgcgcagattatttgtttaccact
tagaacacaggatgtcagcgccatcttgtgacggcgaatgtgggggcggc
tcccaacaagaaacatggaaaactaggcaaagaatacaatggtcaaggga
atccacaaaagttggctgccaatatattaaaagctagatgacattaggat
aggaggctgaaacctgacagcagagctcaaacaaatttctgaatggactg
agggtgtagctcagtggcacagaactgcctccctgtcaccaccaaatcaa
gtatggtgatactcacaaaattaagagtctgaaattttccaaggttccaa
actatcaatgttctttattttcaaaaacaaagccacttgtcttcctaatt
atgaaaaaggaggaggagagaaagaagaggaaggagagagggaggagaaa
aggtggaagagatgaggggga
gaattcattccttagaacaaggaacaaaatacccatggaaggagttatag
agacaaagtttggagctgagacagaaggaaggaccatccagagactgccc
cacccggggatccatcctatatacaaccaccaaacccagacactgctgca
tatgccagcaagattttgctgacaggtccctgatatagctgtctcttgtg
aggctatgccagtgcctggcaaatacagaagcggatgctcacagtaatct
attggatagaacacagggcccccaatggaggagctagagaaagtacccaa
ggagctaaaggggtctgtaaccctataggtggaacaacaatatgaactaa
ccattaccccccagagcttgtgtctctagctacatatgtagcagaagatg
gcctagttggccatcattgggaagagagacccttgctcttgtgaagatta
tatacaggggaatgccagggccaggaagcgggagtgtgtggattggggag
cagtgcggggggagtgtacaggggactttcaggatagcatttgaaatgta
aatgaagaaaatatctaaaaaaaagaagaagagaagaagaaagataagaa
gaagaagaagaaggaggaggaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_129461566_129462424
seq2: B6Ng01-121B11.b_60_918

seq1  TTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTTATTACCGCGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTTATTACCGCGACC  50

seq1  CGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGCCAGTCCCGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGCCAGTCCCGAGTT  100

seq1  TTTTTCTCGTCCCGGGTTTCGGCACCAATTGTTATTAGACGCGTTCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCGTCCCGGGTTTCGGCACCAATTGTTATTAGACGCGTTCTCAC  150

seq1  GCCCGGCCAGGAAAGACGCAACAAACCAAAATCTTCTGCGGCAAAACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGCCAGGAAAGACGCAACAAACCAAAATCTTCTGCGGCAAAACTTT  200

seq1  ATTGCTTACATCTTTGGGAGCCAGGAGGGCAAGCGCCCAGCGCCCAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTACATCTTTGGGAGCCAGGAGGGCAAGCGCCCAGCGCCCAGCCC  250

seq1  CAAAAACGAAAGCCCCTTCAATAATGAAACCGAAACCCCTTCCCTCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACGAAAGCCCCTTCAATAATGAAACCGAAACCCCTTCCCTCTTTA  300

seq1  GGAGAGTTATATTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTTATATTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCAGCC  350

seq1  CATGGCCGAGCTGACGTTCACGGGAAAGGTAGAGTACAAGTAGTCATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCGAGCTGACGTTCACGGGAAAGGTAGAGTACAAGTAGTCATAAA  400

seq1  ATACCCTTGGCTCATGCGCAGATTATTTGTTTACCACTTAGAACACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTTGGCTCATGCGCAGATTATTTGTTTACCACTTAGAACACAGGA  450

seq1  TGTCAGCGCCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCAACAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCGCCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCAACAAGAA  500

seq1  ACATGGAAAACTAGGCAAAGAATACAATGGTCAAGGGAATCCACAAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAAACTAGGCAAAGAATACAATGGTCAAGGGAATCCACAAAAGT  550

seq1  TGGCTGCCAATATATTAAAAGCTAGATGACATTAGGATAGGAGGCTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCAATATATTAAAAGCTAGATGACATTAGGATAGGAGGCTGAAA  600

seq1  CCTGACAGCAGAGCTCAAACAAATTTCTGAATGGACTGAGGGTGTAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAGCAGAGCTCAAACAAATTTCTGAATGGACTGAGGGTGTAGCTC  650

seq1  AGTGGCACAGAACTGCCTCCCTGTCACCACCAAATCAAGTATGGTGATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCACAGAACTGCCTCCCTGTCACCACCAAATCAAGTATGGTGATAC  700

seq1  TCACAAAATTAAGAGTCTGAAATTTTCCAAGGTTCCAAACTATCAATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAATTAAGAGTCTGAAATTTTCCAAGGTTCCAAACTATCAATGTT  750

seq1  CTTTATTTTCAAAAACAAAGCCACTTGTCTTCCTAATTATGAAAAAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTCAAAAACAAAGCCACTTGTCTTCCTAATTATGAAAAAGGAG  800

seq1  GAGGAGAGAAAGAAGAGGAAGGAGAGAGGGAGGAGAAAAGGTGGAAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGAAAGAAGAGGAAGGAGAGAGGGAGGAGAAAAGGTGGAAGAGA  850

seq1  TGAGGGGGA  859
      |||||||||
seq2  TGAGGGGGA  859

seq1: chr7_51012593_51013086
seq2: B6Ng01-121B11.g_185_691 (reverse)

seq1  CTCCTCCTCCTCCTTCTTCTTCTTTGTCAT--------------------  30
      ||||||||||||||||||||||||  || |                    
seq2  CTCCTCCTCCTCCTTCTTCTTCTTCTTCTTATCTTTCTTCTTCTCTTCTT  50

seq1  -TTTTTATTAGATATTTTCTTAATTTACATTTTAAATGTTATCCCAAAAG  79
       ||||| |||||||||||||| |||||||||| ||||| |||||  ||||
seq2  CTTTTTTTTAGATATTTTCTTCATTTACATTTCAAATGCTATCCTGAAAG  100

seq1  TCCCCTATACCCTTTCCCCACCCTGATCCCTAACCCACCCACTCCTGCTT  129
      |||||| ||| ||  |||| | ||| |||| || |||| |||||| ||||
seq2  TCCCCTGTACACTCCCCCCGCACTGCTCCCCAATCCACACACTCCCGCTT  150

seq1  CCTGGCCCTGGCATTCCCCTGTACTGGGGCATATGATCTTCCCAAGATCA  179
      ||||||||||||||||||||||        |||| |||||| ||||| ||
seq2  CCTGGCCCTGGCATTCCCCTGT--------ATATAATCTTCACAAGAGCA  192

seq1  AGGGCCTCTCCTCCAATTGATGGCTGACTAGGCCATCCTCTGCTACATAT  229
      |||| ||||| ||| | |||||||  ||||||||||| ||||||||||||
seq2  AGGGTCTCTCTTCCCAATGATGGCCAACTAGGCCATCTTCTGCTACATAT  242

seq1  GCAACCAGAGACAC-AGTTCTGTGGGGGTAATGATTAGTTCATATTGTTG  278
      | | | |||||||| || |||| |||||||||| ||||||||||||||||
seq2  GTAGCTAGAGACACAAGCTCTG-GGGGGTAATGGTTAGTTCATATTGTTG  291

seq1  ATCCTCCTATAAGGTTGGAGACCCCTTTAGCTCCTTGGGTACTTTGTCTA  328
       ||| |||||| ||||  ||||||||||||||||||||||||||| ||||
seq2  TTCCACCTATAGGGTTACAGACCCCTTTAGCTCCTTGGGTACTTTCTCTA  341

seq1  GCTCCTTCTTTAGGGGCCCTGTGTTCCATCCAATAGATGACTGTGAGCAT  378
      |||||| | || |||||||||||||| ||||||||||| |||||||||||
seq2  GCTCCTCCATTGGGGGCCCTGTGTTCTATCCAATAGATTACTGTGAGCAT  391

seq1  CCACTTCTATATTTTTCAGGCACTGGCATAGCCTCACAAGAGATAGCTAT  428
      || ||||| |||||  ||||||||||||||||||||||||||| ||||||
seq2  CCGCTTCTGTATTTGCCAGGCACTGGCATAGCCTCACAAGAGACAGCTAT  441

seq1  ATCAGGGTCCTGTCAGCAAAATCTTGCTGGCATATGCAATAGTGTCTGGG  478
      ||||||| ||||||||||||||||||||||||||||||  ||||||||||
seq2  ATCAGGGACCTGTCAGCAAAATCTTGCTGGCATATGCAGCAGTGTCTGGG  491

seq1  TTTGGTAGTTGTATAT  494
      |||||| |||||||||
seq2  TTTGGTGGTTGTATAT  507