BAC Information

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BAC

Clone NameB6Ng01-121N01
Chromosome7 (Build37)7 (Build37)
Map Location 50,392,421 - 50,393,40350,084,460 - 50,085,064
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199
Downstream geneLOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121N01.bB6Ng01-121N01.g
ACCDH925402DH925403
length965950
definitionDH925402|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N01, 5' end.DH925403|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,392,421 - 50,393,403)(50,084,460 - 50,085,064)
sequence
gaattcctgaagctggagttacacatagtgatgtgcagccttatatactg
acaatgaagaaaactcggtgctctagaagaaatttccattctctaaaaat
ttttaaaaagatttaattattattatacctaagtacacagtagctgtctt
cagatgcaccacaagagtgcatcagatctcattacaggtggttgtgagcc
accatgtggttgctgggatgtgtactcaggaccttcggaagaagaacagg
caatgttcttacctgcccggccatcttgccagccctctaaagtttgtggt
gttttgctccccaggttttctttctcttttttttaagatttatttattta
tttatttatttatttattttatgtatatgaatgagtacactgtagctgta
cagatggttgtgagctaccatgtggttgctgggaattgaactcagaacct
ctgcttgctctagccctgcttgctctgaaaagaaagaaaatccacttcca
gacttttaggttgtatgtaggtattttcatttctttttcttgttcctttt
taagattttttattattatatgtaagtacactgtagctgtcttcagatgc
accagaagaaggcatcagatctcattatggatggttgtgagccaccatgt
gtttgctggaatttgaactcaggaccttaggaagagcagttggtgctctt
aaccactgagccatctctccagccctttattttcttcaattgagtgcagg
cctctgtatatttaagattcctggtttccctggtgatttgtagatgcaag
gatctttgtgccctaaaatcatgttcctcattaaaacatgaagcactttt
gcaagtgggagaagtagctgaagggtgcatgtgtggttgcctcaatccca
cttgggagggaaagaaagcaatcacagtgggggaagaggcagagggagtg
gggacagaaggggaa
gaattctgtttaggaaatttccggctgtggcaacgaatattaggctcatt
ctcactttctcttccatttgattcattgtatctggttttatattgaggtc
attgatccacttggacttaagctttgtgcaatgtgataagaatggatcta
tattcatttttccacatacagactaccagttagaccagcaccatctagtg
gcccaaagtacttaagtcctgtttccacttcctcaaaacctgatcatgtt
ctctacttccccttcctgtccccactccctctgccccttcccccaccttg
atttctttcttttccctcccaagtgggattgaggcaaccatacatgcacc
cttcagctacttctcccacttgcaaaagggctacaatctttaatgaggaa
caccatgttgggacacaaaggtccttgcacccaaagatcaccagggaaac
caggaatcttaaatatagagaggcctgcactcaattgaagaaaataaagg
actggagagatggctcagtggttaagagcaccaactgctcttcctaaggt
cctgagttcaaatcccagaaaacacatggaggctcacaaccatctgtaat
gagatttctggaagagagaggctaattagcattgttcagaccaagatgta
ggaaatgacctgtgggtggagacacattccacaggatggactgttgccca
ccctcagacaagggaactccttgtcacctcattccctaaagaccaatcag
tttaaagggtgcactgttccgtcaatcacattgtgcctagttgttgatgc
tctattgtgcccctggaaactgcatcaaaactctgaatgactgccagtgt
ccctgcctctgcttcagggtctgggcctaccgcagaacactagaaaaaat
aaatttctcttgctttttgcacgtgtttcacccagggggggtccccgctt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_50392421_50393403
seq2: B6Ng01-121N01.b_46_1010

seq1  GAATTCCTGAAGCTGGAGTTACACATAGTGATGTGCAGCCTTATATACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAAGCTGGAGTTACACATAGTGATGTGCAGCCTTATATACTG  50

seq1  ACAATGAAGAAAACTCGGTGCTCTAGAAGAAATTTCCATTCTCTAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAAGAAAACTCGGTGCTCTAGAAGAAATTTCCATTCTCTAAAAAT  100

seq1  TTTTAAAAAGATTTAATTATTATTATACCTAAGTACACAGTAGCTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAGATTTAATTATTATTATACCTAAGTACACAGTAGCTGTCTT  150

seq1  CAGATGCACCACAAGAGTGCATCAGATCTCATTACAGGTGGTTGTGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCACCACAAGAGTGCATCAGATCTCATTACAGGTGGTTGTGAGCC  200

seq1  ACCATGTGGTTGCTGGGATGTGTACTCAGGACCTTCGGAAGAAGAACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGGTTGCTGGGATGTGTACTCAGGACCTTCGGAAGAAGAACAGG  250

seq1  CAATGTTCTTACCTGCCCGGCCATCTTGCCAGCCCTCTAAAGTTTGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTCTTACCTGCCCGGCCATCTTGCCAGCCCTCTAAAGTTTGTGGT  300

seq1  GTTTTGCTCCCCAGGTTTTCTTTCTCTTTTTTTTAAGATTTATTTATTTA  350
      |||||||||||||||||||||||||||||||||||||             
seq2  GTTTTGCTCCCCAGGTTTTCTTTCTCTTTTTTTTAAG-------------  337

seq1  TTTATTTATTTATTTATTTATTTATTTATTTATTTTATGTATATGAATGA  400
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ---ATTTATTTATTTATTTATTTATTTATTTATTTTATGTATATGAATGA  384

seq1  GTACACTGTAGCTGTACAGATGGTTGTGAGCTACCATGTGGTTGCTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTGTAGCTGTACAGATGGTTGTGAGCTACCATGTGGTTGCTGGGA  434

seq1  ATTGAACTCAGAACCTCTGCTTGCTCTAGCCCTGCTTGCTCTGAAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACTCAGAACCTCTGCTTGCTCTAGCCCTGCTTGCTCTGAAAAGAA  484

seq1  AGAAAATCCACTTCCAGACTTTTAGGTTGTATGTAGGTATTTTCATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCCACTTCCAGACTTTTAGGTTGTATGTAGGTATTTTCATTTCT  534

seq1  TTTTCTTGTTCCTTTTTAAGATTTTTTATTATTATATGTAAGTACACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGTTCCTTTTTAAGATTTTTTATTATTATATGTAAGTACACTGT  584

seq1  AGCTGTCTTCAGATGCACCAGAAGAAGGCATCAGATCTCATTATGGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTTCAGATGCACCAGAAGAAGGCATCAGATCTCATTATGGATGG  634

seq1  TTGTGAGCCACCATGTGTTTGCTGGAATTTGAACTCAGGACCTTAGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCCACCATGTGTTTGCTGGAATTTGAACTCAGGACCTTAGGAAG  684

seq1  AGCAGTTGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTTTATTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTTTATTTTC  734

seq1  TTCAATTGAGTGCAGGCCTCTGTATATTTAAGATTCCTGGTTTCCCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTGAGTGCAGGCCTCTGTATATTTAAGATTCCTGGTTTCCCTGGT  784

seq1  GATTTGTAGATGCAAGGATCTTTGTGCCCTAAAATCATGTTCCTCATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTAGATGCAAGGATCTTTGTGCCCTAAAATCATGTTCCTCATTAA  834

seq1  AACATGAAGCACTTTTGCAAGTGGGAGAAGTAGCTGAAGGGTGCATGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAAGCACTTTTGCAAGTGGGAGAAGTAGCTGAAGGGTGCATGTGT  884

seq1  GGTTGCCTCAATCCCACTTGGGAGGGAAAAGAAAGCAATCACAGTGGGGG  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGTTGCCTCAATCCCACTTGGGAGGG-AAAGAAAGCAATCACAGTGGGGG  933

seq1  AAGAGGCAGAGGGAGTGGGGACAGGAAGGGGAA  983
      ||||||||||||||||||||||| |||||||||
seq2  AAGAGGCAGAGGGAGTGGGGACA-GAAGGGGAA  965

seq1: chr7_50084460_50085064
seq2: B6Ng01-121N01.g_69_673

seq1  GAATTCTGTTTAGGAAATTTCCTTCTGTGGCAATAAATATTAGGTTCTTT  50
      ||||||||||||||||||||||  |||||||||  ||||||||| || ||
seq2  GAATTCTGTTTAGGAAATTTCCGGCTGTGGCAACGAATATTAGGCTCATT  50

seq1  CTCACTTTCTCTTCTATTTAATTCATTGTATCTGGTTTTATATTGAGGTC  100
      |||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  CTCACTTTCTCTTCCATTTGATTCATTGTATCTGGTTTTATATTGAGGTC  100

seq1  ATTGATCCACTTGGACTTAAGCTTTGTGCAATGTGATAAGAATGGATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCCACTTGGACTTAAGCTTTGTGCAATGTGATAAGAATGGATCTA  150

seq1  TATTCATTTTTCCACATACAGACTACCAGTTAGACCAGCACCATCTAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTTTTCCACATACAGACTACCAGTTAGACCAGCACCATCTAGTG  200

seq1  GTCCTCAGGACTTAAGTCCTGTTTCCCCTCTCTCAAAACCTGATCATGTT  250
      | ||  || ||||||||||||||||| ||  |||||||||||||||||||
seq2  GCCCAAAGTACTTAAGTCCTGTTTCCACTTCCTCAAAACCTGATCATGTT  250

seq1  CCCTACTTCCCCTTCCTGTCCCCACTCCCTCTGCCCCTTCCCCCACTGTG  300
      | ||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  CTCTACTTCCCCTTCCTGTCCCCACTCCCTCTGCCCCTTCCCCCACCTTG  300

seq1  ATTGCTTTCTTTTCCCTCCCAAGTAGGATTGAGGCAACCAAACATGCACT  350
      ||| |||||||||||||||||||| ||||||||||||||| |||||||| 
seq2  ATTTCTTTCTTTTCCCTCCCAAGTGGGATTGAGGCAACCATACATGCACC  350

seq1  CTTCAGCTACTTCTCCCACTTGCAAAAGAGCTTCACGCTTTAATGAGGAA  400
      |||||||||||||||||||||||||||| ||| ||  |||||||||||||
seq2  CTTCAGCTACTTCTCCCACTTGCAAAAGGGCTACAATCTTTAATGAGGAA  400

seq1  CATGATGTTGGGGCACAAAGGTCCTTGCATCCAAAGATCACCAGGGAAAC  450
      ||  |||||||| |||||||||||||||| ||||||||||||||||||||
seq2  CACCATGTTGGGACACAAAGGTCCTTGCACCCAAAGATCACCAGGGAAAC  450

seq1  CAGGAATCTTAAATATACAGAGGCCTGCACTCAATTGAAGAAAATAAAGG  500
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAGGAATCTTAAATATAGAGAGGCCTGCACTCAATTGAAGAAAATAAAGG  500

seq1  GCTGGAGATATAACTCAGTGGTTAAGAGCACCAACTGTTGTTCCGAAGGT  550
       ||||||| ||  |||||||||||||||||||||||| | |||| |||||
seq2  ACTGGAGAGATGGCTCAGTGGTTAAGAGCACCAACTGCTCTTCCTAAGGT  550

seq1  CCTGAGTTCAAATCCCAGCAAACACATAATGGCTCACAACCATCCATAAT  600
      |||||||||||||||||| ||||||||   ||||||||||||||  ||||
seq2  CCTGAGTTCAAATCCCAGAAAACACATGGAGGCTCACAACCATCTGTAAT  600

seq1  GAGAT  605
      |||||
seq2  GAGAT  605