BAC Information

Click to search

BAC

Clone NameB6Ng01-123J06
Chromosome7 (Build37)
Map Location 21,888,239 - 21,945,219
singlet/doubletdoublet
Overlap geneEG435951
Upstream geneLOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566, LOC100043569, EG436135, LOC100042996, EG667273, EG667268, EG667262, EG667259, LOC100043574, LOC100043576, Gm1447, LOC100043006, LOC100043583, EG435953, LOC673902, EG667240
Downstream geneGm1446, LOC381937, LOC100043588, LOC670764, EG667215, LOC100043013, LOC621561, EG667199, EG621510, LOC667186, EG628475, LOC100043595, LOC100043596, LOC667358, LOC100043016, LOC100043602, LOC100043604, EG667378, LOC100043607, LOC100043019, LOC100043025, EG667404, EG435940, LOC100043026, EG545929, LOC667421, LOC100043614, LOC667431, LOC100043029, EG620736, EG667444, LOC100043033, LOC100043037, EG667464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123J06.bB6Ng01-123J06.g
ACCDH926706DH926707
length1,0031,013
definitionDH926706|Mus musculus domesticus DNA, BAC clone: B6Ng01-123J06, 5' end.DH926707|Mus musculus domesticus DNA, BAC clone: B6Ng01-123J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,888,239 - 21,889,126)(21,944,204 - 21,945,219)
sequence
gaattctttatatgtattggatattagtaccctatctgatttaggagttg
taaagatcctttcccagactgttaatggcctttttgtcttattgacagtg
tcttttgccttatagaagctttgcaattttatgaggtcccatttgtcaat
tcttgatcctaccacacaagccatttctgttctattcaggaatttctccc
ctgtgcccatatcttcaaggcttttccccactttctcctctatgaatttc
agtgtctcttgttttcttttttaggtatttatttcatttacattttcaat
gctatcccaaatgtcacccacaccccttccccacccactcccccacccac
cgactcccacttctttttaaaatttttttctttttctttaatttttcttt
tttattttcaattaggtatttatttcatttacgtttccaatgctatccca
atagtcccccaagtgctctcccacccactcccacttcttggtcctggctt
tcctctatactgaggcatataaagtttgcatgaccaatgggcctctcttt
ccactgatggccgactaggatatcttctgatacatatgcagatagagaca
cgagctccggggggtactggttagttcatattgttgttccacctataggg
ttgcagatcccttatgctccttggttactttctctagctcctccattggg
ggccatgtgatccatccagtaactgactgtgagcatgaacttctgtgttt
actaggccccggaatagtgtcacaagagacatctatatcagtgtcctttc
agcaaatcttgctagtgtatgcaatggtctcagcgttggaggctgactat
gggatggattcccggatatgtcagtctctaattgaacgatcctttttgtc
tcagctccaaacttggtccctgcaactcctttccatgggtgttttgttcc
cattctaacaaggggaaaagtatgcacactttggtcttcattcttcttga
gtt
gaattcttatcacaggtctaatatacattgatagtatctagagaatctca
tttgtagttaagtaatcctagatatacatgcaaagatatggattgagtaa
tcattaagaaatagatagctccaactcatgtctgctctaggtataataaa
aaactagggatttagttttgattttcagtgatgaaaagtaaaaattctga
ttataaatctaagaattgtatgttctaaacatttattgatattcaaacct
gcaacaatattgtctcagacccaaaggacatatacttaaatgtgtgagaa
ataagatatcattgcactttatttttcaaatgaaattaccagtactcaaa
agggatatatgtggaaataggacaaaaagaaagaataactggtcattaat
tgcttaaataccttatggttgtctaggacaagcacatatccataatttca
actgtgaaatttatattggctaattgacaattacatatcatttattagcc
taataaataattatattgaaataaccttcaaattcaggaatttgtaagag
tcatggcatgatggaaaatgaggaggtagaatacagtcttataaaggatg
aaaggctataatggaacatgaagagttagatttcggtgtgtgtaagagag
aaagtagaccaagaattatggagaagaataactccgactaagtgtcttta
gaaaaactatacagacacttgctgctattggggcttcctgtaatacattc
acttgcatatttcaaaggagttttaataaatcagcactatactagttgga
aagtcccccacgtagacatctcatgataaattatgtaagcttctttggat
ttttatttttttgtatttctttttatttggggtatgagtaattatttgga
tattttcttatccatattgtcatttttataccctttcatggtcccccccc
tggagaccctctatcccatctccctccccctgcttttatgaggatgtcct
ccacctacccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_21888239_21889126
seq2: B6Ng01-123J06.b_50_933

seq1  TTCTTTATATGTATTGGATATTAGTACCCTATCTGATTTAGGAGTTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATATGTATTGGATATTAGTACCCTATCTGATTTAGGAGTTGTAA  50

seq1  AGATCCTTTCCCAGACTGTTAATGGCCTTTTTGTCTTATTGACAGTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTTTCCCAGACTGTTAATGGCCTTTTTGTCTTATTGACAGTGTCT  100

seq1  TTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCT  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTATAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCT  150

seq1  TGATCCTACCACACAAGCCATTTCTGTTCTATTCAGGAATTTCTCCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTACCACACAAGCCATTTCTGTTCTATTCAGGAATTTCTCCCCTG  200

seq1  TGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATGAATTTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATGAATTTCAGT  250

seq1  GTCTCTTGTTTTCTTTTTTAGGTATTTATTTCATTTACATTTCCAATGCT  300
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTCTCTTGTTTTCTTTTTTAGGTATTTATTTCATTTACATTTTCAATGCT  300

seq1  ATCCCAAATGTCACCCACACCCCTTCCCCACCCACTCCCCCACCCACCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAATGTCACCCACACCCCTTCCCCACCCACTCCCCCACCCACCGA  350

seq1  CTCCCACTTCTTTTTTTAAATTTTTTTTCTTTTTCTTTAATTTTTCTTTT  400
      ||||||||||  |||||||| |||||||||||||||||||||||||||||
seq2  CTCCCACTTC--TTTTTAAAATTTTTTTCTTTTTCTTTAATTTTTCTTTT  398

seq1  TTATTTTCAATTAGGTATTTATTTCATTTACGTTTCCAATGCTATCCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCAATTAGGTATTTATTTCATTTACGTTTCCAATGCTATCCCAA  448

seq1  TAGTCCCCCAAGTGCTCTCCCACCCACTCCCACTTCTTGGTCCTGGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCCCAAGTGCTCTCCCACCCACTCCCACTTCTTGGTCCTGGCTTT  498

seq1  CCTCTATACTGAGTCATATAAAGTTTGCATGACCAATGGGCCTCTCTTTC  550
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTCTATACTGAGGCATATAAAGTTTGCATGACCAATGGGCCTCTCTTTC  548

seq1  CACTGATGGCCGACTAGGATATCTTCTGATACATATGCAGATAGAGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATGGCCGACTAGGATATCTTCTGATACATATGCAGATAGAGACAC  598

seq1  GAGCTCCGGGGGGTACTGGTTAGTTCATATTGTTGTTCCTCCTATAGGGT  650
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAGCTCCGGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGT  648

seq1  TGCAGATCCCTTATGCTCCTTGGTTACTTTCTCTAGCTCCTCCATTTGGG  700
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCAGATCCCTTATGCTCCTTGGTTACTTTCTCTAGCTCCTCCATTGGGG  698

seq1  GCCATGTGATCCATCCAGTAACTGACTGTGAGCATGCACTTCTGTGTTTG  750
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  GCCATGTGATCCATCCAGTAACTGACTGTGAGCATGAACTTCTGTGTTTA  748

seq1  CAAGGCCCCGGAATAGCGTCACAAGAGACATCTATATCAGTGTCCTTTCA  800
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTAGGCCCCGGAATAGTGTCACAAGAGACATCTATATCAGTGTCCTTTCA  798

seq1  GCAAAATCTTGCTAGTGTATGCAATGGTGTCAGAGTTTGGAGGCTGACTA  850
      || ||||||||||||||||||||||||| |||| | ||||||||||||||
seq2  GC-AAATCTTGCTAGTGTATGCAATGGTCTCAGCG-TTGGAGGCTGACTA  846

seq1  TGGGATGGATTCCCGGATATGTCAGTCTCTAATTGGAC  888
      ||||||||||||||||||||||||||||||||||| ||
seq2  TGGGATGGATTCCCGGATATGTCAGTCTCTAATTGAAC  884

seq1: chr7_21944204_21945219
seq2: B6Ng01-123J06.g_70_1082 (reverse)

seq1  GGTGGGTAGGTGGAGGAACATCCTCATAAAAGCAGGGGGAGGGAGGATGG  50
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  GGTGGGTAGGTGGAGG-ACATCCTCATAAAAGCAGGGGGAGGGA-GATGG  48

seq1  GATAGAGGGTTTCCAGGGGGGGGACCATGAAAGGGTATAACATGTACAAT  100
      |||||||||| ||||||||||||||||||||||||||||| |   |||||
seq2  GATAGAGGGTCTCCAGGGGGGGGACCATGAAAGGGTATAAAAATGACAAT  98

seq1  ATAGATAAAGAAAATATCCAAAATAATTACTCATA-CCCAAATAAAAAGA  149
      || ||| |||||||||||| ||||||||||||||| ||||||||||||||
seq2  ATGGAT-AAGAAAATATCC-AAATAATTACTCATACCCCAAATAAAAAGA  146

seq1  AATTACAAAAAAATAAAAAT-CAAAGAAGCTTACATTATTTATCATGAGA  198
      || ||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  AA-TACAAAAAAATAAAAATCCAAAGAAGCTTACATAATTTATCATGAGA  195

seq1  TGTCTACGTGGGGGACTGTCCAACTAGTATAGTGCTGATTTATTAAAACT  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTCTACGTGGGGGACTTTCCAACTAGTATAGTGCTGATTTATTAAAACT  245

seq1  CCTTTGAAATATGCAAGTGAATGTATTACAGGAAGCCCCAATAGCAGCAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAAATATGCAAGTGAATGTATTACAGGAAGCCCCAATAGCAGCAA  295

seq1  GTGTCTGTATAGTTTTTCTAAAGACACTTAGTCGGAGTTATTCTTCTCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTATAGTTTTTCTAAAGACACTTAGTCGGAGTTATTCTTCTCCA  345

seq1  TAATTCTTGGTCTACTTTCTCTCTTACACACACCGAAATCTAACTCTTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTGGTCTACTTTCTCTCTTACACACACCGAAATCTAACTCTTCA  395

seq1  TGTTCCATTATAGCCTTTCATCCTTTATAAGACTGTATTCTACCTCCTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCATTATAGCCTTTCATCCTTTATAAGACTGTATTCTACCTCCTCA  445

seq1  TTTTCCATCATGCCATGACTCTTACAAATTCCTGAATTTGAAGGTTATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATCATGCCATGACTCTTACAAATTCCTGAATTTGAAGGTTATTT  495

seq1  CAATATAATTATTTATTAGGCTAATAAATGATATGTAATTGTCAATTAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAATTATTTATTAGGCTAATAAATGATATGTAATTGTCAATTAGC  545

seq1  CAATATAAATTTCACAGTTGAAATTATGGATATGTGCTTGTCCTAGACAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAAATTTCACAGTTGAAATTATGGATATGTGCTTGTCCTAGACAA  595

seq1  CCATAAGGTATTTAAGCAATTAATGACCAGTTATTCTTTCTTTTTGTCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGGTATTTAAGCAATTAATGACCAGTTATTCTTTCTTTTTGTCCT  645

seq1  ATTTCCACATATATCCCTTTTGAGTACTGGTAATTTCATTTGAAAAATAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCACATATATCCCTTTTGAGTACTGGTAATTTCATTTGAAAAATAA  695

seq1  AGTGCAATGATATCTTATTTCTCACACATTTAAGTATATGTCCTTTGGGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAATGATATCTTATTTCTCACACATTTAAGTATATGTCCTTTGGGT  745

seq1  CTGAGACAATATTGTTGCAGGTTTGAATATCAATAAATGTTTAGAACATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACAATATTGTTGCAGGTTTGAATATCAATAAATGTTTAGAACATA  795

seq1  CAATTCTTAGATTTATAATCAGAATTTTTACTTTTCATCACTGAAAATCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTAGATTTATAATCAGAATTTTTACTTTTCATCACTGAAAATCA  845

seq1  AAACTAAATCCCTAGTTTTTTATTATACCTAGAGCAGACATGAGTTGGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAATCCCTAGTTTTTTATTATACCTAGAGCAGACATGAGTTGGAG  895

seq1  CTATCTATTTCTTAATGATTACTCAATCCATATCTTTGCATGTATATCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATTTCTTAATGATTACTCAATCCATATCTTTGCATGTATATCTA  945

seq1  GGATTACTTAACTACAAATGAGATTCTCTAGATACTATCAATGTATATTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTACTTAACTACAAATGAGATTCTCTAGATACTATCAATGTATATTA  995

seq1  GACCTGTGATAAGAATTC  1016
      ||||||||||||||||||
seq2  GACCTGTGATAAGAATTC  1013