BAC Information

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BAC

Clone NameB6Ng01-125F01
Chromosome7 (Build37)
Map Location 121,674,889 - 121,868,349
singlet/doubletdoublet
Overlap genePde3b, Cyp2r1, Calca, LOC100043295, Calcb
Upstream geneMlstd2, EG434228, Spon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik
Downstream geneInsc, EG627967, LOC668472, Sox6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125F01.bB6Ng01-125F01.g
ACCDH927987DH927988
length1,1521,108
definitionDH927987|Mus musculus domesticus DNA, BAC clone: B6Ng01-125F01, 5' end.DH927988|Mus musculus domesticus DNA, BAC clone: B6Ng01-125F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,867,190 - 121,868,349)(121,674,889 - 121,676,011)
sequence
gaattcctaaaagaacttcagaagcccaacccaagaaggatctggctcct
tccaatctcaatttctgttgctgtcaacaccactcacgtactgacttact
ctggcattgaagttgtttctaattcctagctttgtttagtttttctgaat
ttctaaaacatcctggattcatctcctctcctacccacccaagggatatc
tgcatctgcattcttagaacagtcttgcatcacccagtacgcaactagga
gagactgacgtctactaatttcccttctcagtggactaagactcttccca
gtctctcagttctccttcctctcgcccacagatggtaacctctgcatttc
atggtctctttggccttcccagcactctaacacctatttatgctactgct
atattaaatacttctagttaagataaccaatgtaattttttgtcagctag
aaccaagagaaatctgaagtcctatagatgccttatagaaccctacatga
tctgtcaccttcatctccagcctcatcggcttcttccgcatcactccctc
gatgtctgccagtcaattcacagaaactgcatgtcaacttcaccacagta
gtggagaaactcttgcatagatactctagtctctcttgccaatgagttgt
taagaggtaaacagatggagaggagtcttcatatcttaggactacatcaa
atgagtcttaagatatgagccagaagcaatacaaagacttggtatcagtg
aagatcttatatgtggaagtataaatctctggggaaggttaaaccattac
tgtgtgtgtcagagtgaagagttaaggaatataatgaatgtacttatttt
ccttgttaaatagtatttggttatgttcagcatctttgccatttaataat
gcgaggtgaaattttcataggtgcgctgatacaacaatacactgggtagg
agaagagagggactgtacagtagcatcattatactgattgtcttaaacca
agtaaggggtatgaaagatttcactctactacataggacgttatacgact
acatttttatgtgtcctccagaatgtaagtctaccatctcaggccagaaa
ggcctaaggaatggtcacaatatcctgtaaaaaaccaaatccattgtaaa
ca
gaattcactgtggagtctgaatcactaatctgctctgacaactgataatg
gcattgtgtcccatggagaggaaaacattgaggatcattgcttttctttc
ttgaaagaattatatgccgcatctttatttttggctaacaggaagtgctg
atttctcaaagagcaaataaaaagtatactaaatgtgcccaactaataat
gataatttcacttgtttaaataatgctagttaatatttacatattagcct
ttattattgaccaggcactgtttatttatctttatggatgtgtatgacaa
gattgccaccaattctttatagagaaagaaatggacttgaagaggttaaa
tgctaagtgaatatctttatgagttcagatttagaccatgagttgagctg
ctaagacttgtgtctctgaactgtattaccccctggtgctgttagaacag
atttttttccttagctcttttacatgccctttcttttaggtagaaattgt
tacaattcttatgatttatagattcatatgtgtgtatattcaatatatat
tacatttttatattcacatacatatctccatgtaattattattctctgtg
ataattacaaatagtgaaaccaaagttgacttcttttttttaaaaaataa
aaagctatgttgcctttgaaagataatcttattactatttcagtaggaca
ttttaccacataggtgcatatttatagtatattctgattttaaggaagca
tttactgatatatctccctgtcccttggaaagaaaacaatttgaaggcaa
ttgataagaacaaacaaatattagaaactctgtatcctcagaacctaaaa
caattctgtttgttcaaataggccaatgatgtaaatagtaacggtataga
atggagcagtgaaacgatcgcctcttggtctgccagtgtgcatcaaatta
gcagatatcatggcccagcaaagatcgggacctacatttgagatgacaga
gcattgtgatgattttatgagcagtagatgaaacctgagaattgtggacc
tccgagagccgcctattggagagagcctcttttgggccttcagttgctca
gaagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_121867190_121868349
seq2: B6Ng01-125F01.b_46_1197 (reverse)

seq1  TGTTTTTAACAATGGATCTGATTTTTTTCCAGATATTTGTGAACCATCCT  50
      |||||   ||||||||| || |||||| |  |||| |||||| |  ||||
seq2  TGTTT---ACAATGGATTTGGTTTTTTACAGGATA-TTGTGACCATTCCT  46

seq1  TAGG-CTTTCTTGCCTGAGATGGTAGACTTTACATTCTGGA-GACACATA  98
      |||| |||||| |||||||||||||||| |||||||||||| ||||||| 
seq2  TAGGCCTTTCTGGCCTGAGATGGTAGAC-TTACATTCTGGAGGACACAT-  94

seq1  AAAAATGTAGTCGTATAACGTCCTTATGTAGTAGAGTGAAGTCTTTCATA  148
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  AAAAATGTAGTCGTATAACGTCC-TATGTAGTAGAGTGAAATCTTTCATA  143

seq1  CCCCTTACTTGGTTTTAAGAACAATCAGTAATAATGATGCTACTGTACAG  198
      |||||||||||| |||||| ||||||||| ||||||||||||||||||||
seq2  CCCCTTACTTGG-TTTAAG-ACAATCAGT-ATAATGATGCTACTGTACAG  190

seq1  TCCCTCTCTTCTCCTACCCAGTGTATTGTTGTATCAGCGCACCTATGAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCTTCTCCTACCCAGTGTATTGTTGTATCAGCGCACCTATGAAA  240

seq1  ATTTCACCTCGCATTATTAAATGGCAAAGATGCTGAACATAACCAAATAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACCTCGCATTATTAAATGGCAAAGATGCTGAACATAACCAAATAC  290

seq1  TATTTAACAAGGAAAATAAGTACATTCATTATATTCCTTAACTCTTCACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACAAGGAAAATAAGTACATTCATTATATTCCTTAACTCTTCACT  340

seq1  CTGACACACACAGTAATGGTTTAACCTTCCCCAGAGATTTATACTTCCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACACACAGTAATGGTTTAACCTTCCCCAGAGATTTATACTTCCAC  390

seq1  ATATAAGATCTTCACTGATACCAAGTCTTTGTATTGCTTCTGGCTCATAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGATCTTCACTGATACCAAGTCTTTGTATTGCTTCTGGCTCATAT  440

seq1  CTTAAGACTCATTTGATGTAGTCCTAAGATATGAAGACTCCTCTCCATCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGACTCATTTGATGTAGTCCTAAGATATGAAGACTCCTCTCCATCT  490

seq1  GTTTACCTCTTAACAACTCATTGGCAAGAGAGACTAGAGTATCTATGCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCTCTTAACAACTCATTGGCAAGAGAGACTAGAGTATCTATGCAA  540

seq1  GAGTTTCTCCACTACTGTGGTGAAGTTGACATGCAGTTTCTGTGAATTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTCCACTACTGTGGTGAAGTTGACATGCAGTTTCTGTGAATTGA  590

seq1  CTGGCAGACATCGAGGGAGTGATGCGGAAGAAGCCGATGAGGCTGGAGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGACATCGAGGGAGTGATGCGGAAGAAGCCGATGAGGCTGGAGAT  640

seq1  GAAGGTGACAGATCATGTAGGGTTCTATAAGGCATCTATAGGACTTCAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGACAGATCATGTAGGGTTCTATAAGGCATCTATAGGACTTCAGA  690

seq1  TTTCTCTTGGTTCTAGCTGACAAAAAATTACATTGGTTATCTTAACTAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTGGTTCTAGCTGACAAAAAATTACATTGGTTATCTTAACTAGA  740

seq1  AGTATTTAATATAGCAGTAGCATAAATAGGTGTTAGAGTGCTGGGAAGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTAATATAGCAGTAGCATAAATAGGTGTTAGAGTGCTGGGAAGGC  790

seq1  CAAAGAGACCATGAAATGCAGAGGTTACCATCTGTGGGCGAGAGGAAGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGACCATGAAATGCAGAGGTTACCATCTGTGGGCGAGAGGAAGGA  840

seq1  GAACTGAGAGACTGGGAAGAGTCTTAGTCCACTGAGAAGGGAAATTAGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAGAGACTGGGAAGAGTCTTAGTCCACTGAGAAGGGAAATTAGTA  890

seq1  GACGTCAGTCTCTCCTAGTTGCGTACTGGGTGATGCAAGACTGTTCTAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCAGTCTCTCCTAGTTGCGTACTGGGTGATGCAAGACTGTTCTAAG  940

seq1  AATGCAGATGCAGATATCCCTTGGGTGGGTAGGAGAGGAGATGAATCCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGATGCAGATATCCCTTGGGTGGGTAGGAGAGGAGATGAATCCAG  990

seq1  GATGTTTTAGAAATTCAGAAAAACTAAACAAAGCTAGGAATTAGAAACAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTAGAAATTCAGAAAAACTAAACAAAGCTAGGAATTAGAAACAA  1040

seq1  CTTCAATGCCAGAGTAAGTCAGTACGTGAGTGGTGTTGACAGCAACAGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATGCCAGAGTAAGTCAGTACGTGAGTGGTGTTGACAGCAACAGAA  1090

seq1  ATTGAGATTGGAAGGAGCCAGATCCTTCTTGGGTTGGGCTTCTGAAGTTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGATTGGAAGGAGCCAGATCCTTCTTGGGTTGGGCTTCTGAAGTTC  1140

seq1  TTTTAGGAATTC  1160
      ||||||||||||
seq2  TTTTAGGAATTC  1152

seq1: chr7_121674889_121676011
seq2: B6Ng01-125F01.g_66_1173

seq1  GAATTCACTGTGGAGTCTGAATCACTAATCTGCTCTGACAACTGATAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGGAGTCTGAATCACTAATCTGCTCTGACAACTGATAATG  50

seq1  GCATTGTGTCCCATGGAGAGGAAAACATTGAGGATCATTGCTTTTCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTGTCCCATGGAGAGGAAAACATTGAGGATCATTGCTTTTCTTTC  100

seq1  TTGAAAGAATTATATGCCGCATCTTTATTTTTGGCTAACAGGAAGTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGAATTATATGCCGCATCTTTATTTTTGGCTAACAGGAAGTGCTG  150

seq1  ATTTCTCAAAGAGCAAATAAAAAGTATACTAAATGTGCCCAACTAATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCAAAGAGCAAATAAAAAGTATACTAAATGTGCCCAACTAATAAT  200

seq1  GATAATTTCACTTGTTTAAATAATGCTAGTTAATATTTACATATTAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTCACTTGTTTAAATAATGCTAGTTAATATTTACATATTAGCCT  250

seq1  TTATTATTGACCAGGCACTGTTTATTTATCTTTATGGATGTGTATGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTGACCAGGCACTGTTTATTTATCTTTATGGATGTGTATGACAA  300

seq1  GATTGCCACCAATTCTTTATAGAGAAAGAAATGGACTTGAAGAGGTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCACCAATTCTTTATAGAGAAAGAAATGGACTTGAAGAGGTTAAA  350

seq1  TGCTAAGTGAATATCTTTATGAGTTCAGATTTAGACCATGAGTTGAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGTGAATATCTTTATGAGTTCAGATTTAGACCATGAGTTGAGCTG  400

seq1  CTAAGACTTGTGTCTCTGAACTGTATTACCCCCTGGTGCTGTTAGAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACTTGTGTCTCTGAACTGTATTACCCCCTGGTGCTGTTAGAACAG  450

seq1  ATTTTTTTCCTTAGCTCTTTTACATGCCCTTTCTTTTAGGTAGAAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCCTTAGCTCTTTTACATGCCCTTTCTTTTAGGTAGAAATTGT  500

seq1  TACAATTCTTATGATTTATAGATTCATATGTGTGTATATTCAATATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTCTTATGATTTATAGATTCATATGTGTGTATATTCAATATATAT  550

seq1  TACATTTTTATATTCACATACATATCTCCATGTAATTATTATTCTCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTTATATTCACATACATATCTCCATGTAATTATTATTCTCTGTG  600

seq1  ATAATTACAAATAGTGAAACCAAAGTTGACTTCTTTTTTTTAAAAAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACAAATAGTGAAACCAAAGTTGACTTCTTTTTTTTAAAAAATAA  650

seq1  AAAGCTATGTTGCCTTTGAAAGATAATCTTATTACTATTTCAGTAGGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTATGTTGCCTTTGAAAGATAATCTTATTACTATTTCAGTAGGACA  700

seq1  TTTTACCACATAGGTGCATATTTATAGTATATTCTGATTTTAAGGAAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCACATAGGTGCATATTTATAGTATATTCTGATTTTAAGGAAGCA  750

seq1  TTTACTGATATATCTCCCTGTCCCTTGGAAAGAAAACAATTTGAAGGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGATATATCTCCCTGTCCCTTGGAAAGAAAACAATTTGAAGGCAA  800

seq1  TTGATAAGAACAAACAAATATTAGAAACTCTGTATCCTCAGAACCTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAGAACAAACAAATATTAGAAACTCTGTATCCTCAGAACCTAAAA  850

seq1  CAATTCTGTTTGTTCAAAATAGGCCAATGATGTAAATAGTAACGGTATAG  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAATTCTGTTTGTTC-AAATAGGCCAATGATGTAAATAGTAACGGTATAG  899

seq1  AATGGAGCAGTGAAAACGATCGCCTCTTGGTCTGCCAGGTGTGCATCAAA  950
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  AATGGAGCAGTG-AAACGATCGCCTCTTGGTCTGCCA-GTGTGCATCAAA  947

seq1  TTAGCAGATATCAATGGCCCAGCAAAAGATCGGGACCTACATTTGAGATG  1000
      |||||||||||| |||||||||| ||||||||||||||||||||||||| 
seq2  TTAGCAGATATC-ATGGCCCAGC-AAAGATCGGGACCTACATTTGAGAT-  994

seq1  GACAGAAGGCATTGTGAATGAATTTTATGAGCAGGTAAGATGAAACGTGA  1050
      ||||||  |||||||| ||| |||||||||||||   ||||||||| |||
seq2  GACAGA--GCATTGTG-ATG-ATTTTATGAGCAG--TAGATGAAACCTGA  1038

seq1  G-ATTGTTGGGACTTCGAAGAGCTGCCATATGAAGAGAGCACCTTTGGGG  1099
      | |||||  |||| ||  ||||| |||   || |||||||  |||| |||
seq2  GAATTGT--GGACCTCCGAGAGCCGCCTATTGGAGAGAGCCTCTTTTGGG  1086

seq1  CCTTCAGTTGCTACAGGAAGAAAA  1123
      |||||||||||| || ||||||||
seq2  CCTTCAGTTGCT-CA-GAAGAAAA  1108