BAC Information

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BAC

Clone NameB6Ng01-127B12
Chromosome7 (Build37)
Map Location 52,572,727 - 52,697,353
singlet/doubletdoublet
Overlap geneTrpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1
Upstream geneShank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik
Downstream geneFtl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127B12.bB6Ng01-127B12.g
ACCDH929301DH929302
length254528
definitionDH929301|Mus musculus domesticus DNA, BAC clone: B6Ng01-127B12, 5' end.DH929302|Mus musculus domesticus DNA, BAC clone: B6Ng01-127B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,572,727 - 52,572,980)(52,696,820 - 52,697,353)
sequence
gaattcagtttgagaagataatgtcatcatcgtatacatctttttttgtt
ttttccagacagggtttctctgtgtagccctggctgtcctggaactcact
gtgtagaccagactgtcctcaaactcagaaattcacctgcctcagcctcc
caagtgctgagattaaaggtgtgcgccaccacacccggctcatggcatac
atctttaaaacattcagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgt
cctttcataatgtcacagttttataatggccctttagtgatctcagctcc
acgggggactgattcaacaccgctacttgacccttcatactctgttttag
atttttttcttgtattttatgtgtatggtggttttgcctgcatgcatgac
tgtgtaacatatatgtgcctgttgcctgtggaggcaagaagaggtggtca
ggtctccaggaattggaacacacagatggttataagccaccatgtgtgtt
ctcagaattaaacctggatttcccagaaaagtaaccagtgtttatacact
cagactcgcacacatgcacacacacatgcgtgccatacacacgcacacac
atacataaaaacaaatattttttaaaagtatatgaggggagaaagggttg
agtccctaaaagagacataaagacagatggtgcactgtgagccaagtatg
acagagcgtgttaatcaagatgaccctgagctacatagtgagaccctggc
tcagagagagagagagagagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52572727_52572980
seq2: B6Ng01-127B12.b_45_298

seq1  GAATTCAGTTTGAGAAGATAATGTCATCATCGTATACATCTTTTTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTGAGAAGATAATGTCATCATCGTATACATCTTTTTTTGTT  50

seq1  TTTTCCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  100

seq1  GTGTAGACCAGACTGTCCTCAAACTCAGAAATTCACCTGCCTCAGCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGACCAGACTGTCCTCAAACTCAGAAATTCACCTGCCTCAGCCTCC  150

seq1  CAAGTGCTGAGATTAAAGGTGTGCGCCACCACACCCGGCTCATGGCATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTGAGATTAAAGGTGTGCGCCACCACACCCGGCTCATGGCATAC  200

seq1  ATCTTTAAAACATTCAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAAACATTCAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  250

seq1  GTGT  254
      ||||
seq2  GTGT  254

seq1: chr7_52696820_52697353
seq2: B6Ng01-127B12.g_70_603 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTGAGCCAGGGTCTCACTATGTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTGAGCCAGGGTCTCACTATGTAGCT  50

seq1  CAGGGTCATCTTGATTAACACGCTCTGTCATACTTGGCTCACAGTGCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCATCTTGATTAACACGCTCTGTCATACTTGGCTCACAGTGCACC  100

seq1  ATCTGTCTTTATGTCTCTTTTAGGGACTCAACCCTTTCTCCCCTCATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTTTATGTCTCTTTTAGGGACTCAACCCTTTCTCCCCTCATATA  150

seq1  CTTTTAAAAAATATTTGTTTTTATGTATGTGTGTGCGTGTGTATGGCACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAAAATATTTGTTTTTATGTATGTGTGTGCGTGTGTATGGCACG  200

seq1  CATGTGTGTGTGCATGTGTGCGAGTCTGAGTGTATAAACACTGGTTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTGTGCATGTGTGCGAGTCTGAGTGTATAAACACTGGTTACTT  250

seq1  TTCTGGGAAATCCAGGTTTAATTCTGAGAACACACATGGTGGCTTATAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGAAATCCAGGTTTAATTCTGAGAACACACATGGTGGCTTATAAC  300

seq1  CATCTGTGTGTTCCAATTCCTGGAGACCTGACCACCTCTTCTTGCCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGTGTTCCAATTCCTGGAGACCTGACCACCTCTTCTTGCCTCCA  350

seq1  CAGGCAACAGGCACATATATGTTACACAGTCATGCATGCAGGCAAAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAACAGGCACATATATGTTACACAGTCATGCATGCAGGCAAAACCA  400

seq1  CCATACACATAAAATACAAGAAAAAAATCTAAAACAGAGTATGAAGGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACACATAAAATACAAGAAAAAAATCTAAAACAGAGTATGAAGGGTC  450

seq1  AAGTAGCGGTGTTGAATCAGTCCCCCGTGGAGCTGAGATCACTAAAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCGGTGTTGAATCAGTCCCCCGTGGAGCTGAGATCACTAAAGGGC  500

seq1  CATTATAAAACTGTGACATTATGAAAGGGAATTC  534
      ||||||||||||||||||||||||||||||||||
seq2  CATTATAAAACTGTGACATTATGAAAGGGAATTC  534