BAC Information

Click to search

BAC

Clone NameB6Ng01-127O23
Chromosome18 (Build37)7 (Build37)
Map Location 45,555,136 - 45,555,65115,180,999 - 15,182,015
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDcp2, Mcc, LOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
Downstream geneKcnn2, Trim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127O23.bB6Ng01-127O23.g
ACCDH929919DH929920
length9891,011
definitionDH929919|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O23, 5' end.DH929920|Mus musculus domesticus DNA, BAC clone: B6Ng01-127O23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,555,136 - 45,555,651)(15,180,999 - 15,182,015)
sequence
gaattctttgttcagttctgagccccattttttaaggggtttatttgatt
ttctggagtccatcctcttgagttctttatatatattaggtattagtccc
ctatctgatttaggataggtaaagatactttcccaatctgtttgtggcct
ttttgtcttgttgatgttgtcttttgccttgcagaagctttgcagtttct
tgaggtcccatttgtcaattctcgatcttacagcacaagccaatgctgtt
ctattcaggaattttccccctgtccccataacttcaaggcttttccccac
tttctcttctgtaagttgcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaagagataggaatggatcgatttgc
attcttctacatgaaaacaaggagttgtgccaacaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatttctgtgtcttcaattctattccatttg
tctacttgtctatcactataccaggaccatgatgtttttatcacaattgc
tctgtagtaaagttttaggtcaggcatggtgattccaccagaagttcttt
tatcctcgagaagagcttttgctatcctaggtttttttgttattccagat
gaatttgcagattgctctttctaaattcattgaagaattgagttggaatt
ttgagggggattgcactgaatctgtagattgtttttggcaagatagccat
ttttacaatgttgatcctgccaatccatgagcatggaagatctttccagc
tccgagatcttctttaatttcttttcttagagacttgaagtttttatcat
acagatctttcactttcttagttaagtcacaccaagatattttatattat
tgtgactattgagaggggtgttgtttccctaatttcttt
gaattctatcccaggtggtttccggtagaccttttgtgtttacattcctc
tgttttatgtaagattccggttacctcatttgtaccttgagaatatgtca
cccaacttccttattgtcttctgcataaaaagtctgatgcttgatttgaa
aaatacattcagattccacacggcctctcctgtgtgcatctgtctgtcaa
ttcatcctatgctttgtccacccgcaactagagacccgttccatgcagac
aaaggggcccagagagtctgcggcagttggcgcctgaacagggacaccag
agcaggttagtctttctttctttcttttttctttctcttctttattttct
caggcaaagacagtatctcgtcgtgaccgtgctacagacgggctaattcg
tagatcagttaagagacgagtaagttttatcatggggcagtcagaatcga
aagggaagaagttgtttctgtcggtcttcaagcacatgttgtctggaaga
ggcctaaaggtctcggatagatctttacaagaattttatgatttcgtgca
aaaaaatcagtccctggtttccagaggagggaagcttaacattagaagat
tggaagtgagtaggtaaagatatgagaaagttccatgaggaaaattcatc
tagggacatctccaccaatgcccttattctgtggcaacaaatgaggggat
cttttgactgagaaaatagatttagaatttctttacagaggaagctcctt
cagagccctctgataatcagaaaacgaaaccatatgctagtaataaagaa
attgttccatacaggccaaaaggggaaagggctagagaaaaggagatcag
agactactgacattgaaggtgatgatgaatgggatttactgagggatgga
aaaagcaaaattaggggaggaagagatcatttcacagctaccagacggca
tggagaggggtctttactatggaccagccaccggtagactggcactaggc
tcgtcggctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45555136_45555651
seq2: B6Ng01-127O23.b_521_1035 (reverse)

seq1  AAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAA  50
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  AAAGAAATTAGGGAAACAACACCCCTCTCAATAGTCAC-AATAATATAAA  49

seq1  ATATCTCGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAA  100
      |||||| || |||||| |||||||| ||||||||||||||||||||||||
seq2  ATATCTTGGTGTGACT-TAACTAAGAAAGTGAAAGATCTGTATGATAAAA  98

seq1  ACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAA  150
      ||||||||||||| |  ||||||||||||||||||||| | || ||||||
seq2  ACTTCAAGTCTCTAAGAAAAGAAATTAAAGAAGATCTC-GGAGCTGGAAA  147

seq1  GATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTAT  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTAT  197

seq1  CTTGCCAAAAGCAATCTACAGGTTCAATGCAATCCCCATCAAAATTCCAA  250
      |||||||||| |||||||||| |||| |||||||||| ||||||||||||
seq2  CTTGCCAAAAACAATCTACAGATTCAGTGCAATCCCCCTCAAAATTCCAA  247

seq1  CTCAATTCTTCAACGAA-TTAGAAGGAGCAATTTGCAAATTCATCTGGAA  299
      ||||||||||||| ||| |||||| ||||||| |||||||||||||||||
seq2  CTCAATTCTTCAATGAATTTAGAAAGAGCAATCTGCAAATTCATCTGGAA  297

seq1  TAAC-AAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAATC  348
      |||| |||||||||||||||||||||  ||||||| ||||||||||||  
seq2  TAACAAAAAAACCTAGGATAGCAAAAGCTCTTCTCGAGGATAAAAGAACT  347

seq1  TCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGT  398
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTGGTGGAATCACCATGCCTGACCTAAAACTTTACTACAGAGCAATTGT  397

seq1  GGTAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGA  448
      | |||||||  |||||| ||||||||| || |||||||||||| ||||||
seq2  GATAAAAACATCATGGTCCTGGTATAGTGATAGACAAGTAGACAAATGGA  447

seq1  ATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATC  498
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATAGAATTGAAGACACAGAAATGAACCCACACACCTATGGTCACTTGATC  497

seq1  TTCGACAAGGGAGCTAAA  516
      || |||||||||||||||
seq2  TTTGACAAGGGAGCTAAA  515

seq1: chr7_15180999_15182015
seq2: B6Ng01-127O23.g_71_1081

seq1  GAATTCTATCCCAGGTGGTTTCCGGTAGACCTTTTGTGTTTACATTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCCAGGTGGTTTCCGGTAGACCTTTTGTGTTTACATTCCTC  50

seq1  TGTTTTATGTAAGATTCCGGTTACCTCATTTGTACCTTGAGAATATGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATGTAAGATTCCGGTTACCTCATTTGTACCTTGAGAATATGTCA  100

seq1  CCCAACTTCCTTATTGTCTTCTGCATAAAAAGTCTGATGCTTGATTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTTCCTTATTGTCTTCTGCATAAAAAGTCTGATGCTTGATTTGAA  150

seq1  AAATACATTCAGATTCCACACGGCCTCTCCTGTGTGCATCTGTCTGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTCAGATTCCACACGGCCTCTCCTGTGTGCATCTGTCTGTCAA  200

seq1  TTCATCCTATGCTTTGTCCACCCGCAACTAGAGACCCGTTCCATGCAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTATGCTTTGTCCACCCGCAACTAGAGACCCGTTCCATGCAGAC  250

seq1  AAAGGGGCCCAGAGAGTCTGCGGCAGTTGGCGCCTGAACAGGGACACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGCCCAGAGAGTCTGCGGCAGTTGGCGCCTGAACAGGGACACCAG  300

seq1  AGCAGGTTAGTCTTTCTTTCTTTCTTTTTTCTTTCTCTTCTTTATTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTTAGTCTTTCTTTCTTTCTTTTTTCTTTCTCTTCTTTATTTTCT  350

seq1  CAGGCAAAGACAGTATCTCGTCGTGACCGTGCTACAGACGGGCTAATTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAGACAGTATCTCGTCGTGACCGTGCTACAGACGGGCTAATTCG  400

seq1  TAGATCAGTTAAGAGACGAGTAAGTTTTATCATGGGGCAGTCAGAATCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAGTTAAGAGACGAGTAAGTTTTATCATGGGGCAGTCAGAATCGA  450

seq1  AAGGGAAGAAGTTGTTTCTGTCGGTCTTCAAGCACATGTTGTCTGGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGAAGTTGTTTCTGTCGGTCTTCAAGCACATGTTGTCTGGAAGA  500

seq1  GGCCTAAAGGTCTCGGATAGATCTTTACAAGAATTTTATGATTTCGTGC-  549
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGCCTAAAGGTCTCGGATAGATCTTTACAAGAATTTTATGATTTCGTGCA  550

seq1  AAAAAATCAGTCCCTGGTTTCCAGAGGAGGGAAGCTTAACATTAGAAGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCAGTCCCTGGTTTCCAGAGGAGGGAAGCTTAACATTAGAAGAT  600

seq1  TGGAAGTGAGTAGGTAAAGATATGAGAAAGTTCCATGAGGAAAATTCATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTGAGTAGGTAAAGATATGAGAAAGTTCCATGAGGAAAATTCATC  650

seq1  TAGGGACATCTCCACCAATGCCCTTATTCTGTGGCAACAAATGA-GGGAT  698
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAGGGACATCTCCACCAATGCCCTTATTCTGTGGCAACAAATGAGGGGAT  700

seq1  CTTTTGACTGAGAAAATAGATTTAGAA-TTCCTTACAGAGGAAGCTCCTT  747
      ||||||||||||||||||||||||||| ||| ||||||||||||||||||
seq2  CTTTTGACTGAGAAAATAGATTTAGAATTTCTTTACAGAGGAAGCTCCTT  750

seq1  CAGAGCCCTCTGATAATCAGAAAACGAAACCATATGCTAGTAAT-AAGAA  796
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGAGCCCTCTGATAATCAGAAAACGAAACCATATGCTAGTAATAAAGAA  800

seq1  ATTGTACCATACAGG-CAAAAAGGGAAAAGGCTAGAGAAAAGAGAATCAG  845
      ||||| ||||||||| ||||| |||||| |||||||||||||   |||||
seq2  ATTGTTCCATACAGGCCAAAAGGGGAAAGGGCTAGAGAAAAGGAGATCAG  850

seq1  AGACTACTGACAATGAAGGTGATGATGAATGGGATATTACTGAGGGAATG  895
      |||||||||||| |||||||||||||||||||||| |||||||||| |||
seq2  AGACTACTGACATTGAAGGTGATGATGAATGGGAT-TTACTGAGGG-ATG  898

seq1  AAAAAAGCATAAATTTAAGGGAAGAAGAGATCATTTTCACAGCTACCAAG  945
       |||||||  ||| ||| |||| |||||||||| ||||||||||||| ||
seq2  GAAAAAGC--AAAATTAGGGGAGGAAGAGATCA-TTTCACAGCTACC-AG  944

seq1  ACAGCAGTGAGGAGGAGTCTTTAACTATGGCACCAGCCACCCGTAGACTG  995
      || ||| ||  |||| |||||| ||||||| |||||||||| ||||||||
seq2  ACGGCA-TGGAGAGGGGTCTTT-ACTATGG-ACCAGCCACCGGTAGACTG  991

seq1  GCACCAAAGCCTCGTCGGCTCT  1017
      ||||   || ||||||||||||
seq2  GCAC--TAGGCTCGTCGGCTCT  1011